data_5YIC # _model_server_result.job_id O3QXiU2_f1YNvOO07Ta8Sg _model_server_result.datetime_utc '2024-11-13 03:32:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5YIC # _exptl.entry_id 5YIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YIC _cell.length_a 106.5 _cell.length_b 106.5 _cell.length_c 71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 46 A CYS 49 1_555 A SG CYS 51 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 248 A CYS 251 1_555 A SG CYS 284 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 331 n n C1 C2 GOL sing 332 n n C1 H11 GOL sing 333 n n C1 H12 GOL sing 334 n n O1 HO1 GOL sing 335 n n C2 O2 GOL sing 336 n n C2 C3 GOL sing 337 n n C2 H2 GOL sing 338 n n O2 HO2 GOL sing 339 n n C3 O3 GOL sing 340 n n C3 H31 GOL sing 341 n n C3 H32 GOL sing 342 n n O3 HO3 GOL sing 343 n n # _atom_sites.entry_id 5YIC _atom_sites.fract_transf_matrix[1][1] 0.00939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8VO A 1 401 1 8VO 333 . C 3 CPS A 1 402 3 CPS CPS . D 4 GOL A 1 403 2 GOL GOL . E 4 GOL A 1 404 3 GOL GOL . F 4 GOL A 1 405 6 GOL GOL . G 4 GOL A 1 406 7 GOL GOL . H 5 HOH A 1 501 234 HOH HOH . H 5 HOH A 2 502 77 HOH HOH . H 5 HOH A 3 503 310 HOH HOH . H 5 HOH A 4 504 254 HOH HOH . H 5 HOH A 5 505 5 HOH HOH . H 5 HOH A 6 506 56 HOH HOH . H 5 HOH A 7 507 19 HOH HOH . H 5 HOH A 8 508 62 HOH HOH . H 5 HOH A 9 509 153 HOH HOH . H 5 HOH A 10 510 69 HOH HOH . H 5 HOH A 11 511 58 HOH HOH . H 5 HOH A 12 512 20 HOH HOH . H 5 HOH A 13 513 188 HOH HOH . H 5 HOH A 14 514 15 HOH HOH . H 5 HOH A 15 515 71 HOH HOH . H 5 HOH A 16 516 131 HOH HOH . H 5 HOH A 17 517 25 HOH HOH . H 5 HOH A 18 518 57 HOH HOH . H 5 HOH A 19 519 319 HOH HOH . H 5 HOH A 20 520 28 HOH HOH . H 5 HOH A 21 521 17 HOH HOH . H 5 HOH A 22 522 42 HOH HOH . H 5 HOH A 23 523 112 HOH HOH . H 5 HOH A 24 524 130 HOH HOH . H 5 HOH A 25 525 217 HOH HOH . H 5 HOH A 26 526 6 HOH HOH . H 5 HOH A 27 527 191 HOH HOH . H 5 HOH A 28 528 16 HOH HOH . H 5 HOH A 29 529 113 HOH HOH . H 5 HOH A 30 530 156 HOH HOH . H 5 HOH A 31 531 224 HOH HOH . H 5 HOH A 32 532 147 HOH HOH . H 5 HOH A 33 533 7 HOH HOH . H 5 HOH A 34 534 75 HOH HOH . H 5 HOH A 35 535 36 HOH HOH . H 5 HOH A 36 536 300 HOH HOH . H 5 HOH A 37 537 159 HOH HOH . H 5 HOH A 38 538 243 HOH HOH . H 5 HOH A 39 539 4 HOH HOH . H 5 HOH A 40 540 142 HOH HOH . H 5 HOH A 41 541 39 HOH HOH . H 5 HOH A 42 542 34 HOH HOH . H 5 HOH A 43 543 219 HOH HOH . H 5 HOH A 44 544 68 HOH HOH . H 5 HOH A 45 545 307 HOH HOH . H 5 HOH A 46 546 202 HOH HOH . H 5 HOH A 47 547 287 HOH HOH . H 5 HOH A 48 548 154 HOH HOH . H 5 HOH A 49 549 175 HOH HOH . H 5 HOH A 50 550 136 HOH HOH . H 5 HOH A 51 551 238 HOH HOH . H 5 HOH A 52 552 48 HOH HOH . H 5 HOH A 53 553 284 HOH HOH . H 5 HOH A 54 554 116 HOH HOH . H 5 HOH A 55 555 184 HOH HOH . H 5 HOH A 56 556 78 HOH HOH . H 5 HOH A 57 557 96 HOH HOH . H 5 HOH A 58 558 65 HOH HOH . H 5 HOH A 59 559 143 HOH HOH . H 5 HOH A 60 560 47 HOH HOH . H 5 HOH A 61 561 291 HOH HOH . H 5 HOH A 62 562 79 HOH HOH . H 5 HOH A 63 563 317 HOH HOH . H 5 HOH A 64 564 31 HOH HOH . H 5 HOH A 65 565 46 HOH HOH . H 5 HOH A 66 566 162 HOH HOH . H 5 HOH A 67 567 1 HOH HOH . H 5 HOH A 68 568 180 HOH HOH . H 5 HOH A 69 569 165 HOH HOH . H 5 HOH A 70 570 9 HOH HOH . H 5 HOH A 71 571 128 HOH HOH . H 5 HOH A 72 572 151 HOH HOH . H 5 HOH A 73 573 18 HOH HOH . H 5 HOH A 74 574 72 HOH HOH . H 5 HOH A 75 575 132 HOH HOH . H 5 HOH A 76 576 321 HOH HOH . H 5 HOH A 77 577 101 HOH HOH . H 5 HOH A 78 578 10 HOH HOH . H 5 HOH A 79 579 91 HOH HOH . H 5 HOH A 80 580 201 HOH HOH . H 5 HOH A 81 581 27 HOH HOH . H 5 HOH A 82 582 320 HOH HOH . H 5 HOH A 83 583 266 HOH HOH . H 5 HOH A 84 584 85 HOH HOH . H 5 HOH A 85 585 190 HOH HOH . H 5 HOH A 86 586 26 HOH HOH . H 5 HOH A 87 587 35 HOH HOH . H 5 HOH A 88 588 70 HOH HOH . H 5 HOH A 89 589 50 HOH HOH . H 5 HOH A 90 590 84 HOH HOH . H 5 HOH A 91 591 240 HOH HOH . H 5 HOH A 92 592 33 HOH HOH . H 5 HOH A 93 593 51 HOH HOH . H 5 HOH A 94 594 149 HOH HOH . H 5 HOH A 95 595 124 HOH HOH . H 5 HOH A 96 596 259 HOH HOH . H 5 HOH A 97 597 22 HOH HOH . H 5 HOH A 98 598 120 HOH HOH . H 5 HOH A 99 599 13 HOH HOH . H 5 HOH A 100 600 168 HOH HOH . H 5 HOH A 101 601 74 HOH HOH . H 5 HOH A 102 602 100 HOH HOH . H 5 HOH A 103 603 76 HOH HOH . H 5 HOH A 104 604 93 HOH HOH . H 5 HOH A 105 605 218 HOH HOH . H 5 HOH A 106 606 133 HOH HOH . H 5 HOH A 107 607 305 HOH HOH . H 5 HOH A 108 608 176 HOH HOH . H 5 HOH A 109 609 289 HOH HOH . H 5 HOH A 110 610 98 HOH HOH . H 5 HOH A 111 611 23 HOH HOH . H 5 HOH A 112 612 49 HOH HOH . H 5 HOH A 113 613 52 HOH HOH . H 5 HOH A 114 614 145 HOH HOH . H 5 HOH A 115 615 89 HOH HOH . H 5 HOH A 116 616 122 HOH HOH . H 5 HOH A 117 617 258 HOH HOH . H 5 HOH A 118 618 114 HOH HOH . H 5 HOH A 119 619 8 HOH HOH . H 5 HOH A 120 620 282 HOH HOH . H 5 HOH A 121 621 299 HOH HOH . H 5 HOH A 122 622 37 HOH HOH . H 5 HOH A 123 623 265 HOH HOH . H 5 HOH A 124 624 187 HOH HOH . H 5 HOH A 125 625 29 HOH HOH . H 5 HOH A 126 626 140 HOH HOH . H 5 HOH A 127 627 286 HOH HOH . H 5 HOH A 128 628 12 HOH HOH . H 5 HOH A 129 629 239 HOH HOH . H 5 HOH A 130 630 242 HOH HOH . H 5 HOH A 131 631 54 HOH HOH . H 5 HOH A 132 632 139 HOH HOH . H 5 HOH A 133 633 87 HOH HOH . H 5 HOH A 134 634 32 HOH HOH . H 5 HOH A 135 635 144 HOH HOH . H 5 HOH A 136 636 53 HOH HOH . H 5 HOH A 137 637 11 HOH HOH . H 5 HOH A 138 638 44 HOH HOH . H 5 HOH A 139 639 102 HOH HOH . H 5 HOH A 140 640 67 HOH HOH . H 5 HOH A 141 641 3 HOH HOH . H 5 HOH A 142 642 172 HOH HOH . H 5 HOH A 143 643 21 HOH HOH . H 5 HOH A 144 644 208 HOH HOH . H 5 HOH A 145 645 88 HOH HOH . H 5 HOH A 146 646 296 HOH HOH . H 5 HOH A 147 647 83 HOH HOH . H 5 HOH A 148 648 226 HOH HOH . H 5 HOH A 149 649 283 HOH HOH . H 5 HOH A 150 650 121 HOH HOH . H 5 HOH A 151 651 293 HOH HOH . H 5 HOH A 152 652 262 HOH HOH . H 5 HOH A 153 653 158 HOH HOH . H 5 HOH A 154 654 157 HOH HOH . H 5 HOH A 155 655 141 HOH HOH . H 5 HOH A 156 656 163 HOH HOH . H 5 HOH A 157 657 43 HOH HOH . H 5 HOH A 158 658 251 HOH HOH . H 5 HOH A 159 659 146 HOH HOH . H 5 HOH A 160 660 24 HOH HOH . H 5 HOH A 161 661 60 HOH HOH . H 5 HOH A 162 662 306 HOH HOH . H 5 HOH A 163 663 225 HOH HOH . H 5 HOH A 164 664 288 HOH HOH . H 5 HOH A 165 665 166 HOH HOH . H 5 HOH A 166 666 40 HOH HOH . H 5 HOH A 167 667 150 HOH HOH . H 5 HOH A 168 668 66 HOH HOH . H 5 HOH A 169 669 126 HOH HOH . H 5 HOH A 170 670 322 HOH HOH . H 5 HOH A 171 671 164 HOH HOH . H 5 HOH A 172 672 123 HOH HOH . H 5 HOH A 173 673 308 HOH HOH . H 5 HOH A 174 674 280 HOH HOH . H 5 HOH A 175 675 38 HOH HOH . H 5 HOH A 176 676 109 HOH HOH . H 5 HOH A 177 677 30 HOH HOH . H 5 HOH A 178 678 115 HOH HOH . H 5 HOH A 179 679 129 HOH HOH . H 5 HOH A 180 680 309 HOH HOH . H 5 HOH A 181 681 134 HOH HOH . H 5 HOH A 182 682 80 HOH HOH . H 5 HOH A 183 683 127 HOH HOH . H 5 HOH A 184 684 64 HOH HOH . H 5 HOH A 185 685 200 HOH HOH . H 5 HOH A 186 686 148 HOH HOH . H 5 HOH A 187 687 81 HOH HOH . H 5 HOH A 188 688 155 HOH HOH . H 5 HOH A 189 689 318 HOH HOH . H 5 HOH A 190 690 2 HOH HOH . H 5 HOH A 191 691 103 HOH HOH . H 5 HOH A 192 692 323 HOH HOH . H 5 HOH A 193 693 198 HOH HOH . H 5 HOH A 194 694 61 HOH HOH . H 5 HOH A 195 695 152 HOH HOH . H 5 HOH A 196 696 298 HOH HOH . H 5 HOH A 197 697 211 HOH HOH . H 5 HOH A 198 698 203 HOH HOH . H 5 HOH A 199 699 160 HOH HOH . H 5 HOH A 200 700 73 HOH HOH . H 5 HOH A 201 701 324 HOH HOH . H 5 HOH A 202 702 111 HOH HOH . H 5 HOH A 203 703 255 HOH HOH . H 5 HOH A 204 704 173 HOH HOH . H 5 HOH A 205 705 301 HOH HOH . H 5 HOH A 206 706 214 HOH HOH . H 5 HOH A 207 707 209 HOH HOH . H 5 HOH A 208 708 138 HOH HOH . H 5 HOH A 209 709 14 HOH HOH . H 5 HOH A 210 710 170 HOH HOH . H 5 HOH A 211 711 248 HOH HOH . H 5 HOH A 212 712 135 HOH HOH . H 5 HOH A 213 713 304 HOH HOH . H 5 HOH A 214 714 90 HOH HOH . H 5 HOH A 215 715 223 HOH HOH . H 5 HOH A 216 716 227 HOH HOH . H 5 HOH A 217 717 294 HOH HOH . H 5 HOH A 218 718 63 HOH HOH . H 5 HOH A 219 719 107 HOH HOH . H 5 HOH A 220 720 137 HOH HOH . H 5 HOH A 221 721 178 HOH HOH . H 5 HOH A 222 722 86 HOH HOH . H 5 HOH A 223 723 295 HOH HOH . H 5 HOH A 224 724 241 HOH HOH . H 5 HOH A 225 725 256 HOH HOH . H 5 HOH A 226 726 315 HOH HOH . H 5 HOH A 227 727 125 HOH HOH . H 5 HOH A 228 728 45 HOH HOH . H 5 HOH A 229 729 264 HOH HOH . H 5 HOH A 230 730 186 HOH HOH . H 5 HOH A 231 731 99 HOH HOH . H 5 HOH A 232 732 297 HOH HOH . H 5 HOH A 233 733 261 HOH HOH . H 5 HOH A 234 734 246 HOH HOH . H 5 HOH A 235 735 235 HOH HOH . H 5 HOH A 236 736 253 HOH HOH . H 5 HOH A 237 737 105 HOH HOH . H 5 HOH A 238 738 292 HOH HOH . H 5 HOH A 239 739 161 HOH HOH . H 5 HOH A 240 740 185 HOH HOH . H 5 HOH A 241 741 303 HOH HOH . H 5 HOH A 242 742 285 HOH HOH . H 5 HOH A 243 743 290 HOH HOH . H 5 HOH A 244 744 302 HOH HOH . H 5 HOH A 245 745 104 HOH HOH . H 5 HOH A 246 746 213 HOH HOH . H 5 HOH A 247 747 257 HOH HOH . H 5 HOH A 248 748 278 HOH HOH . H 5 HOH A 249 749 314 HOH HOH . H 5 HOH A 250 750 281 HOH HOH . H 5 HOH A 251 751 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -49.119 -5.028 -9.309 1 72.88 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 4 -48.746 -5.432 -10.632 1 69.78 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 4 -48.799 -6.153 -8.328 1 72.52 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 4 -47.53 -6.735 -8.637 1 72.85 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 4 -48.788 -5.624 -6.898 1 76.16 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 4 -48.282 -6.604 -5.979 1 78.84 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 6 #