data_5YID # _model_server_result.job_id IcYr0_P7fzjogcb-PbXrsg _model_server_result.datetime_utc '2024-11-28 02:44:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5YID # _exptl.entry_id 5YID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 614.877 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YID _cell.length_a 107.6 _cell.length_b 107.6 _cell.length_c 72.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YID _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 45 A CYS 49 1_555 A SG CYS 50 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 247 A CYS 251 1_555 A SG CYS 283 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 A OD1 ASP 32 A ASP 36 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A OD1 ASP 212 A ASP 216 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A OD2 ASP 212 A ASP 216 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc4 B OAG K95 . A K95 401 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc5 B OAI K95 . A K95 401 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C32 H58 N2 O7 S' _chem_comp.formula_weight 614.877 _chem_comp.id CPS _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CHAPS # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CPS sing 70 n n C1 C12 CPS sing 71 n n C2 C11 CPS sing 72 n n C2 C15 CPS sing 73 n n C2 C19 CPS sing 74 n n C3 C4 CPS sing 75 n n C3 C19 CPS sing 76 n n C4 C5 CPS sing 77 n n C4 O4 CPS sing 78 n n C5 C6 CPS sing 79 n n C5 C9 CPS sing 80 n n C5 C10 CPS sing 81 n n C6 C7 CPS sing 82 n n C6 C18 CPS sing 83 n n C7 C8 CPS sing 84 n n C8 C9 CPS sing 85 n n C9 C20 CPS sing 86 n n C12 C13 CPS sing 87 n n C13 C14 CPS sing 88 n n C13 O2 CPS sing 89 n n C14 C15 CPS sing 90 n n C15 C16 CPS sing 91 n n C16 C17 CPS sing 92 n n C17 C18 CPS sing 93 n n C17 O3 CPS sing 94 n n C18 C19 CPS sing 95 n n C20 C21 CPS sing 96 n n C20 C22 CPS sing 97 n n C22 C23 CPS sing 98 n n C23 C24 CPS sing 99 n n C24 N1 CPS sing 100 n n C24 O1 CPS doub 101 n n C25 C26 CPS sing 102 n n C25 N1 CPS sing 103 n n C26 C27 CPS sing 104 n n C27 N2 CPS sing 105 n n C28 N2 CPS sing 106 n n C29 N2 CPS sing 107 n n C30 C31 CPS sing 108 n n C30 N2 CPS sing 109 n n C31 C32 CPS sing 110 n n C32 S CPS sing 111 n n O2S S CPS sing 112 n n O3S S CPS doub 113 n n O1S S CPS doub 114 n n C1 H1 CPS sing 115 n n C1 H1A CPS sing 116 n n C3 H3 CPS sing 117 n n C3 H3A CPS sing 118 n n C4 H4 CPS sing 119 n n C6 H6 CPS sing 120 n n C7 H7 CPS sing 121 n n C7 H7A CPS sing 122 n n C8 H8 CPS sing 123 n n C8 H8A CPS sing 124 n n C9 H9 CPS sing 125 n n C10 H10 CPS sing 126 n n C10 H10A CPS sing 127 n n C10 H10B CPS sing 128 n n C11 H11 CPS sing 129 n n C11 H11A CPS sing 130 n n C11 H11B CPS sing 131 n n C12 H12 CPS sing 132 n n C12 H12A CPS sing 133 n n C13 H13 CPS sing 134 n n C14 H14 CPS sing 135 n n C14 H14A CPS sing 136 n n C15 H15 CPS sing 137 n n C16 H16 CPS sing 138 n n C16 H16A CPS sing 139 n n C17 H17 CPS sing 140 n n C18 H18 CPS sing 141 n n C19 H19 CPS sing 142 n n C20 H20 CPS sing 143 n n C21 H21 CPS sing 144 n n C21 H21A CPS sing 145 n n C21 H21B CPS sing 146 n n C22 H22 CPS sing 147 n n C22 H22A CPS sing 148 n n C23 H23 CPS sing 149 n n C23 H23A CPS sing 150 n n C25 H25 CPS sing 151 n n C25 H25A CPS sing 152 n n C26 H261 CPS sing 153 n n C27 H271 CPS sing 154 n n C28 H28 CPS sing 155 n n C28 H28A CPS sing 156 n n C28 H28B CPS sing 157 n n C29 H29 CPS sing 158 n n C29 H29A CPS sing 159 n n C29 H29B CPS sing 160 n n C30 H30 CPS sing 161 n n C30 H30A CPS sing 162 n n C31 H31 CPS sing 163 n n C31 H31A CPS sing 164 n n C32 H32 CPS sing 165 n n C32 H32A CPS sing 166 n n N1 HN1 CPS sing 167 n n O2 HO2 CPS sing 168 n n O3 HO3 CPS sing 169 n n O4 HO4 CPS sing 170 n n C26 H262 CPS sing 171 n n C27 H272 CPS sing 172 n n # _atom_sites.entry_id 5YID _atom_sites.fract_transf_matrix[1][1] 0.009294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K95 A 1 401 1 K95 395 . C 3 CPS A 1 402 1 CPS CPS . D 4 NA A 1 403 1 NA NA . E 5 HOH A 1 501 93 HOH HOH . E 5 HOH A 2 502 110 HOH HOH . E 5 HOH A 3 503 23 HOH HOH . E 5 HOH A 4 504 79 HOH HOH . E 5 HOH A 5 505 76 HOH HOH . E 5 HOH A 6 506 108 HOH HOH . E 5 HOH A 7 507 10 HOH HOH . E 5 HOH A 8 508 67 HOH HOH . E 5 HOH A 9 509 69 HOH HOH . E 5 HOH A 10 510 41 HOH HOH . E 5 HOH A 11 511 98 HOH HOH . E 5 HOH A 12 512 89 HOH HOH . E 5 HOH A 13 513 82 HOH HOH . E 5 HOH A 14 514 102 HOH HOH . E 5 HOH A 15 515 84 HOH HOH . E 5 HOH A 16 516 6 HOH HOH . E 5 HOH A 17 517 43 HOH HOH . E 5 HOH A 18 518 4 HOH HOH . E 5 HOH A 19 519 27 HOH HOH . E 5 HOH A 20 520 12 HOH HOH . E 5 HOH A 21 521 68 HOH HOH . E 5 HOH A 22 522 46 HOH HOH . E 5 HOH A 23 523 73 HOH HOH . E 5 HOH A 24 524 31 HOH HOH . E 5 HOH A 25 525 18 HOH HOH . E 5 HOH A 26 526 61 HOH HOH . E 5 HOH A 27 527 60 HOH HOH . E 5 HOH A 28 528 28 HOH HOH . E 5 HOH A 29 529 51 HOH HOH . E 5 HOH A 30 530 21 HOH HOH . E 5 HOH A 31 531 16 HOH HOH . E 5 HOH A 32 532 109 HOH HOH . E 5 HOH A 33 533 104 HOH HOH . E 5 HOH A 34 534 13 HOH HOH . E 5 HOH A 35 535 75 HOH HOH . E 5 HOH A 36 536 106 HOH HOH . E 5 HOH A 37 537 15 HOH HOH . E 5 HOH A 38 538 103 HOH HOH . E 5 HOH A 39 539 74 HOH HOH . E 5 HOH A 40 540 56 HOH HOH . E 5 HOH A 41 541 95 HOH HOH . E 5 HOH A 42 542 26 HOH HOH . E 5 HOH A 43 543 66 HOH HOH . E 5 HOH A 44 544 81 HOH HOH . E 5 HOH A 45 545 88 HOH HOH . E 5 HOH A 46 546 100 HOH HOH . E 5 HOH A 47 547 25 HOH HOH . E 5 HOH A 48 548 2 HOH HOH . E 5 HOH A 49 549 39 HOH HOH . E 5 HOH A 50 550 97 HOH HOH . E 5 HOH A 51 551 3 HOH HOH . E 5 HOH A 52 552 17 HOH HOH . E 5 HOH A 53 553 8 HOH HOH . E 5 HOH A 54 554 24 HOH HOH . E 5 HOH A 55 555 45 HOH HOH . E 5 HOH A 56 556 19 HOH HOH . E 5 HOH A 57 557 90 HOH HOH . E 5 HOH A 58 558 29 HOH HOH . E 5 HOH A 59 559 65 HOH HOH . E 5 HOH A 60 560 101 HOH HOH . E 5 HOH A 61 561 33 HOH HOH . E 5 HOH A 62 562 38 HOH HOH . E 5 HOH A 63 563 78 HOH HOH . E 5 HOH A 64 564 64 HOH HOH . E 5 HOH A 65 565 58 HOH HOH . E 5 HOH A 66 566 32 HOH HOH . E 5 HOH A 67 567 22 HOH HOH . E 5 HOH A 68 568 77 HOH HOH . E 5 HOH A 69 569 71 HOH HOH . E 5 HOH A 70 570 42 HOH HOH . E 5 HOH A 71 571 92 HOH HOH . E 5 HOH A 72 572 48 HOH HOH . E 5 HOH A 73 573 85 HOH HOH . E 5 HOH A 74 574 50 HOH HOH . E 5 HOH A 75 575 44 HOH HOH . E 5 HOH A 76 576 40 HOH HOH . E 5 HOH A 77 577 52 HOH HOH . E 5 HOH A 78 578 35 HOH HOH . E 5 HOH A 79 579 94 HOH HOH . E 5 HOH A 80 580 87 HOH HOH . E 5 HOH A 81 581 113 HOH HOH . E 5 HOH A 82 582 34 HOH HOH . E 5 HOH A 83 583 9 HOH HOH . E 5 HOH A 84 584 49 HOH HOH . E 5 HOH A 85 585 70 HOH HOH . E 5 HOH A 86 586 112 HOH HOH . E 5 HOH A 87 587 37 HOH HOH . E 5 HOH A 88 588 5 HOH HOH . E 5 HOH A 89 589 1 HOH HOH . E 5 HOH A 90 590 96 HOH HOH . E 5 HOH A 91 591 72 HOH HOH . E 5 HOH A 92 592 80 HOH HOH . E 5 HOH A 93 593 47 HOH HOH . E 5 HOH A 94 594 36 HOH HOH . E 5 HOH A 95 595 53 HOH HOH . E 5 HOH A 96 596 91 HOH HOH . E 5 HOH A 97 597 107 HOH HOH . E 5 HOH A 98 598 59 HOH HOH . E 5 HOH A 99 599 83 HOH HOH . E 5 HOH A 100 600 105 HOH HOH . E 5 HOH A 101 601 11 HOH HOH . E 5 HOH A 102 602 62 HOH HOH . E 5 HOH A 103 603 30 HOH HOH . E 5 HOH A 104 604 20 HOH HOH . E 5 HOH A 105 605 14 HOH HOH . E 5 HOH A 106 606 99 HOH HOH . E 5 HOH A 107 607 63 HOH HOH . E 5 HOH A 108 608 55 HOH HOH . E 5 HOH A 109 609 54 HOH HOH . E 5 HOH A 110 610 7 HOH HOH . E 5 HOH A 111 611 111 HOH HOH . E 5 HOH A 112 612 86 HOH HOH . E 5 HOH A 113 613 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CPS . . . C 3 -19.984 15.014 -18.764 1 53.49 ? C1 CPS 402 A 1 HETATM 2 C C2 CPS . . . C 3 -18.784 14.238 -18.197 1 52.99 ? C2 CPS 402 A 1 HETATM 3 C C3 CPS . . . C 3 -19.138 15.302 -15.837 1 49.62 ? C3 CPS 402 A 1 HETATM 4 C C4 CPS . . . C 3 -18.486 15.879 -14.577 1 50.63 ? C4 CPS 402 A 1 HETATM 5 C C5 CPS . . . C 3 -17.325 15.025 -14.056 1 52.91 ? C5 CPS 402 A 1 HETATM 6 C C6 CPS . . . C 3 -16.337 14.844 -15.212 1 51.91 ? C6 CPS 402 A 1 HETATM 7 C C7 CPS . . . C 3 -15.101 14.221 -14.579 1 55.06 ? C7 CPS 402 A 1 HETATM 8 C C8 CPS . . . C 3 -15.06 14.875 -13.2 1 55.81 ? C8 CPS 402 A 1 HETATM 9 C C9 CPS . . . C 3 -16.381 15.648 -13.014 1 56.94 ? C9 CPS 402 A 1 HETATM 10 C C10 CPS . . . C 3 -17.894 13.709 -13.508 1 53.85 ? C10 CPS 402 A 1 HETATM 11 C C11 CPS . . . C 3 -19.32 12.853 -17.835 1 54.34 ? C11 CPS 402 A 1 HETATM 12 C C12 CPS . . . C 3 -19.629 16.357 -19.388 1 51.31 ? C12 CPS 402 A 1 HETATM 13 C C13 CPS . . . C 3 -18.633 16.185 -20.518 1 52.83 ? C13 CPS 402 A 1 HETATM 14 C C14 CPS . . . C 3 -17.399 15.429 -20.012 1 52.78 ? C14 CPS 402 A 1 HETATM 15 C C15 CPS . . . C 3 -17.74 14.101 -19.31 1 52.39 ? C15 CPS 402 A 1 HETATM 16 C C16 CPS . . . C 3 -16.448 13.414 -18.838 1 49.84 ? C16 CPS 402 A 1 HETATM 17 C C17 CPS . . . C 3 -15.862 13.983 -17.546 1 49.63 ? C17 CPS 402 A 1 HETATM 18 C C18 CPS . . . C 3 -16.914 14.165 -16.444 1 50.69 ? C18 CPS 402 A 1 HETATM 19 C C19 CPS . . . C 3 -18.144 14.941 -16.967 1 52.49 ? C19 CPS 402 A 1 HETATM 20 C C20 CPS . . . C 3 -16.82 15.727 -11.534 1 60.84 ? C20 CPS 402 A 1 HETATM 21 C C21 CPS . . . C 3 -18.032 16.637 -11.354 1 60.8 ? C21 CPS 402 A 1 HETATM 22 C C22 CPS . . . C 3 -15.709 16.183 -10.578 1 64.27 ? C22 CPS 402 A 1 HETATM 23 C C23 CPS . . . C 3 -15.179 17.599 -10.818 1 69.8 ? C23 CPS 402 A 1 HETATM 24 C C24 CPS . . . C 3 -13.943 17.879 -9.987 1 79.48 ? C24 CPS 402 A 1 HETATM 25 C C25 CPS . . . C 3 -12.182 19.478 -9.458 1 92.4 ? C25 CPS 402 A 1 HETATM 26 C C26 CPS . . . C 3 -11.774 20.892 -9.839 1 99.93 ? C26 CPS 402 A 1 HETATM 27 C C27 CPS . . . C 3 -12.736 21.895 -9.191 1 109.94 ? C27 CPS 402 A 1 HETATM 28 C C28 CPS . . . C 3 -11.259 23.815 -8.926 1 118.47 ? C28 CPS 402 A 1 HETATM 29 C C29 CPS . . . C 3 -12.478 23.554 -10.97 1 115.92 ? C29 CPS 402 A 1 HETATM 30 C C30 CPS . . . C 3 -13.676 24.172 -9.021 1 129.39 ? C30 CPS 402 A 1 HETATM 31 C C31 CPS . . . C 3 -14.348 23.826 -7.683 1 138.63 ? C31 CPS 402 A 1 HETATM 32 C C32 CPS . . . C 3 -13.453 24.059 -6.466 1 150.99 ? C32 CPS 402 A 1 HETATM 33 N N1 CPS . . . C 3 -13.375 19.066 -10.175 1 88.13 ? N1 CPS 402 A 1 HETATM 34 N N2 CPS . . . C 3 -12.533 23.335 -9.506 1 118.81 ? N2 CPS 402 A 1 HETATM 35 O O1 CPS . . . C 3 -13.492 17.063 -9.198 1 86.76 ? O1 CPS 402 A 1 HETATM 36 O O2 CPS . . . C 3 -18.23 17.477 -20.991 1 52.61 ? O2 CPS 402 A 1 HETATM 37 O O3 CPS . . . C 3 -15.2 15.213 -17.837 1 48.6 ? O3 CPS 402 A 1 HETATM 38 O O4 CPS . . . C 3 -18.062 17.203 -14.907 1 45.6 ? O4 CPS 402 A 1 HETATM 39 O O2S CPS . . . C 3 -14.69 25.777 -5.029 1 164.62 ? O2S CPS 402 A 1 HETATM 40 O O3S CPS . . . C 3 -15.587 23.527 -5.116 1 167.75 ? O3S CPS 402 A 1 HETATM 41 O O1S CPS . . . C 3 -13.541 23.96 -3.908 1 163.18 ? O1S CPS 402 A 1 HETATM 42 S S CPS . . . C 3 -14.347 24.337 -5.093 1 163.32 ? S CPS 402 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #