data_5YIE # _model_server_result.job_id t9egxUSKwKs_uBYyIVFaUg _model_server_result.datetime_utc '2024-11-24 08:44:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yie # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5YIE # _exptl.entry_id 5YIE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 614.877 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YIE _cell.length_a 106.6 _cell.length_b 106.6 _cell.length_c 72.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YIE _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 45 A CYS 49 1_555 A SG CYS 50 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 247 A CYS 251 1_555 A SG CYS 283 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc1 A OD1 ASP 32 A ASP 36 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc2 A OD2 ASP 212 A ASP 216 1_555 E NA NA . A NA 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc3 D O23 8VF . A 8VF 403 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc4 D O26 8VF . A 8VF 403 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'C32 H58 N2 O7 S' _chem_comp.formula_weight 614.877 _chem_comp.id CPS _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CHAPS # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CPS sing 176 n n C1 C12 CPS sing 177 n n C2 C11 CPS sing 178 n n C2 C15 CPS sing 179 n n C2 C19 CPS sing 180 n n C3 C4 CPS sing 181 n n C3 C19 CPS sing 182 n n C4 C5 CPS sing 183 n n C4 O4 CPS sing 184 n n C5 C6 CPS sing 185 n n C5 C9 CPS sing 186 n n C5 C10 CPS sing 187 n n C6 C7 CPS sing 188 n n C6 C18 CPS sing 189 n n C7 C8 CPS sing 190 n n C8 C9 CPS sing 191 n n C9 C20 CPS sing 192 n n C12 C13 CPS sing 193 n n C13 C14 CPS sing 194 n n C13 O2 CPS sing 195 n n C14 C15 CPS sing 196 n n C15 C16 CPS sing 197 n n C16 C17 CPS sing 198 n n C17 C18 CPS sing 199 n n C17 O3 CPS sing 200 n n C18 C19 CPS sing 201 n n C20 C21 CPS sing 202 n n C20 C22 CPS sing 203 n n C22 C23 CPS sing 204 n n C23 C24 CPS sing 205 n n C24 N1 CPS sing 206 n n C24 O1 CPS doub 207 n n C25 C26 CPS sing 208 n n C25 N1 CPS sing 209 n n C26 C27 CPS sing 210 n n C27 N2 CPS sing 211 n n C28 N2 CPS sing 212 n n C29 N2 CPS sing 213 n n C30 C31 CPS sing 214 n n C30 N2 CPS sing 215 n n C31 C32 CPS sing 216 n n C32 S CPS sing 217 n n O2S S CPS sing 218 n n O3S S CPS doub 219 n n O1S S CPS doub 220 n n C1 H1 CPS sing 221 n n C1 H1A CPS sing 222 n n C3 H3 CPS sing 223 n n C3 H3A CPS sing 224 n n C4 H4 CPS sing 225 n n C6 H6 CPS sing 226 n n C7 H7 CPS sing 227 n n C7 H7A CPS sing 228 n n C8 H8 CPS sing 229 n n C8 H8A CPS sing 230 n n C9 H9 CPS sing 231 n n C10 H10 CPS sing 232 n n C10 H10A CPS sing 233 n n C10 H10B CPS sing 234 n n C11 H11 CPS sing 235 n n C11 H11A CPS sing 236 n n C11 H11B CPS sing 237 n n C12 H12 CPS sing 238 n n C12 H12A CPS sing 239 n n C13 H13 CPS sing 240 n n C14 H14 CPS sing 241 n n C14 H14A CPS sing 242 n n C15 H15 CPS sing 243 n n C16 H16 CPS sing 244 n n C16 H16A CPS sing 245 n n C17 H17 CPS sing 246 n n C18 H18 CPS sing 247 n n C19 H19 CPS sing 248 n n C20 H20 CPS sing 249 n n C21 H21 CPS sing 250 n n C21 H21A CPS sing 251 n n C21 H21B CPS sing 252 n n C22 H22 CPS sing 253 n n C22 H22A CPS sing 254 n n C23 H23 CPS sing 255 n n C23 H23A CPS sing 256 n n C25 H25 CPS sing 257 n n C25 H25A CPS sing 258 n n C26 H261 CPS sing 259 n n C27 H271 CPS sing 260 n n C28 H28 CPS sing 261 n n C28 H28A CPS sing 262 n n C28 H28B CPS sing 263 n n C29 H29 CPS sing 264 n n C29 H29A CPS sing 265 n n C29 H29B CPS sing 266 n n C30 H30 CPS sing 267 n n C30 H30A CPS sing 268 n n C31 H31 CPS sing 269 n n C31 H31A CPS sing 270 n n C32 H32 CPS sing 271 n n C32 H32A CPS sing 272 n n N1 HN1 CPS sing 273 n n O2 HO2 CPS sing 274 n n O3 HO3 CPS sing 275 n n O4 HO4 CPS sing 276 n n C26 H262 CPS sing 277 n n C27 H272 CPS sing 278 n n # _atom_sites.entry_id 5YIE _atom_sites.fract_transf_matrix[1][1] 0.009381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CPS A 1 401 1 CPS CPS . C 2 CPS A 1 402 2 CPS CPS . D 3 8VF A 1 403 1 8VF 742 . E 4 NA A 1 404 1 NA NA . F 5 HOH A 1 501 47 HOH HOH . F 5 HOH A 2 502 51 HOH HOH . F 5 HOH A 3 503 150 HOH HOH . F 5 HOH A 4 504 48 HOH HOH . F 5 HOH A 5 505 60 HOH HOH . F 5 HOH A 6 506 37 HOH HOH . F 5 HOH A 7 507 42 HOH HOH . F 5 HOH A 8 508 71 HOH HOH . F 5 HOH A 9 509 52 HOH HOH . F 5 HOH A 10 510 23 HOH HOH . F 5 HOH A 11 511 61 HOH HOH . F 5 HOH A 12 512 55 HOH HOH . F 5 HOH A 13 513 86 HOH HOH . F 5 HOH A 14 514 15 HOH HOH . F 5 HOH A 15 515 1 HOH HOH . F 5 HOH A 16 516 149 HOH HOH . F 5 HOH A 17 517 45 HOH HOH . F 5 HOH A 18 518 49 HOH HOH . F 5 HOH A 19 519 41 HOH HOH . F 5 HOH A 20 520 36 HOH HOH . F 5 HOH A 21 521 19 HOH HOH . F 5 HOH A 22 522 208 HOH HOH . F 5 HOH A 23 523 138 HOH HOH . F 5 HOH A 24 524 29 HOH HOH . F 5 HOH A 25 525 21 HOH HOH . F 5 HOH A 26 526 171 HOH HOH . F 5 HOH A 27 527 56 HOH HOH . F 5 HOH A 28 528 9 HOH HOH . F 5 HOH A 29 529 34 HOH HOH . F 5 HOH A 30 530 178 HOH HOH . F 5 HOH A 31 531 12 HOH HOH . F 5 HOH A 32 532 58 HOH HOH . F 5 HOH A 33 533 153 HOH HOH . F 5 HOH A 34 534 38 HOH HOH . F 5 HOH A 35 535 39 HOH HOH . F 5 HOH A 36 536 43 HOH HOH . F 5 HOH A 37 537 30 HOH HOH . F 5 HOH A 38 538 33 HOH HOH . F 5 HOH A 39 539 181 HOH HOH . F 5 HOH A 40 540 46 HOH HOH . F 5 HOH A 41 541 44 HOH HOH . F 5 HOH A 42 542 35 HOH HOH . F 5 HOH A 43 543 2 HOH HOH . F 5 HOH A 44 544 130 HOH HOH . F 5 HOH A 45 545 14 HOH HOH . F 5 HOH A 46 546 25 HOH HOH . F 5 HOH A 47 547 121 HOH HOH . F 5 HOH A 48 548 54 HOH HOH . F 5 HOH A 49 549 26 HOH HOH . F 5 HOH A 50 550 206 HOH HOH . F 5 HOH A 51 551 62 HOH HOH . F 5 HOH A 52 552 106 HOH HOH . F 5 HOH A 53 553 4 HOH HOH . F 5 HOH A 54 554 57 HOH HOH . F 5 HOH A 55 555 10 HOH HOH . F 5 HOH A 56 556 24 HOH HOH . F 5 HOH A 57 557 163 HOH HOH . F 5 HOH A 58 558 198 HOH HOH . F 5 HOH A 59 559 123 HOH HOH . F 5 HOH A 60 560 97 HOH HOH . F 5 HOH A 61 561 27 HOH HOH . F 5 HOH A 62 562 6 HOH HOH . F 5 HOH A 63 563 194 HOH HOH . F 5 HOH A 64 564 177 HOH HOH . F 5 HOH A 65 565 105 HOH HOH . F 5 HOH A 66 566 40 HOH HOH . F 5 HOH A 67 567 11 HOH HOH . F 5 HOH A 68 568 28 HOH HOH . F 5 HOH A 69 569 200 HOH HOH . F 5 HOH A 70 570 151 HOH HOH . F 5 HOH A 71 571 68 HOH HOH . F 5 HOH A 72 572 173 HOH HOH . F 5 HOH A 73 573 20 HOH HOH . F 5 HOH A 74 574 174 HOH HOH . F 5 HOH A 75 575 50 HOH HOH . F 5 HOH A 76 576 147 HOH HOH . F 5 HOH A 77 577 53 HOH HOH . F 5 HOH A 78 578 22 HOH HOH . F 5 HOH A 79 579 184 HOH HOH . F 5 HOH A 80 580 7 HOH HOH . F 5 HOH A 81 581 87 HOH HOH . F 5 HOH A 82 582 188 HOH HOH . F 5 HOH A 83 583 154 HOH HOH . F 5 HOH A 84 584 118 HOH HOH . F 5 HOH A 85 585 137 HOH HOH . F 5 HOH A 86 586 95 HOH HOH . F 5 HOH A 87 587 220 HOH HOH . F 5 HOH A 88 588 84 HOH HOH . F 5 HOH A 89 589 65 HOH HOH . F 5 HOH A 90 590 102 HOH HOH . F 5 HOH A 91 591 63 HOH HOH . F 5 HOH A 92 592 180 HOH HOH . F 5 HOH A 93 593 31 HOH HOH . F 5 HOH A 94 594 169 HOH HOH . F 5 HOH A 95 595 81 HOH HOH . F 5 HOH A 96 596 217 HOH HOH . F 5 HOH A 97 597 161 HOH HOH . F 5 HOH A 98 598 166 HOH HOH . F 5 HOH A 99 599 67 HOH HOH . F 5 HOH A 100 600 72 HOH HOH . F 5 HOH A 101 601 211 HOH HOH . F 5 HOH A 102 602 143 HOH HOH . F 5 HOH A 103 603 212 HOH HOH . F 5 HOH A 104 604 75 HOH HOH . F 5 HOH A 105 605 82 HOH HOH . F 5 HOH A 106 606 183 HOH HOH . F 5 HOH A 107 607 8 HOH HOH . F 5 HOH A 108 608 185 HOH HOH . F 5 HOH A 109 609 207 HOH HOH . F 5 HOH A 110 610 59 HOH HOH . F 5 HOH A 111 611 213 HOH HOH . F 5 HOH A 112 612 221 HOH HOH . F 5 HOH A 113 613 78 HOH HOH . F 5 HOH A 114 614 201 HOH HOH . F 5 HOH A 115 615 205 HOH HOH . F 5 HOH A 116 616 187 HOH HOH . F 5 HOH A 117 617 186 HOH HOH . F 5 HOH A 118 618 162 HOH HOH . F 5 HOH A 119 619 172 HOH HOH . F 5 HOH A 120 620 113 HOH HOH . F 5 HOH A 121 621 214 HOH HOH . F 5 HOH A 122 622 222 HOH HOH . F 5 HOH A 123 623 89 HOH HOH . F 5 HOH A 124 624 215 HOH HOH . F 5 HOH A 125 625 83 HOH HOH . F 5 HOH A 126 626 196 HOH HOH . F 5 HOH A 127 627 176 HOH HOH . F 5 HOH A 128 628 17 HOH HOH . F 5 HOH A 129 629 218 HOH HOH . F 5 HOH A 130 630 193 HOH HOH . F 5 HOH A 131 631 192 HOH HOH . F 5 HOH A 132 632 203 HOH HOH . F 5 HOH A 133 633 199 HOH HOH . F 5 HOH A 134 634 204 HOH HOH . F 5 HOH A 135 635 3 HOH HOH . F 5 HOH A 136 636 210 HOH HOH . F 5 HOH A 137 637 197 HOH HOH . F 5 HOH A 138 638 32 HOH HOH . F 5 HOH A 139 639 164 HOH HOH . F 5 HOH A 140 640 167 HOH HOH . F 5 HOH A 141 641 223 HOH HOH . F 5 HOH A 142 642 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CPS . . . C 2 17.373 -17.368 -29.462 1 69.84 ? C1 CPS 402 A 1 HETATM 2 C C2 CPS . . . C 2 18.048 -18.558 -30.146 1 68.99 ? C2 CPS 402 A 1 HETATM 3 C C3 CPS . . . C 2 19.715 -18.921 -28.128 1 67.82 ? C3 CPS 402 A 1 HETATM 4 C C4 CPS . . . C 2 21.149 -19.282 -27.665 1 69.97 ? C4 CPS 402 A 1 HETATM 5 C C5 CPS . . . C 2 21.729 -20.498 -28.407 1 71.51 ? C5 CPS 402 A 1 HETATM 6 C C6 CPS . . . C 2 21.585 -20.223 -29.903 1 69.86 ? C6 CPS 402 A 1 HETATM 7 C C7 CPS . . . C 2 22.412 -21.301 -30.6 1 72.06 ? C7 CPS 402 A 1 HETATM 8 C C8 CPS . . . C 2 23.609 -21.485 -29.665 1 71.72 ? C8 CPS 402 A 1 HETATM 9 C C9 CPS . . . C 2 23.251 -20.78 -28.346 1 71.14 ? C9 CPS 402 A 1 HETATM 10 C C10 CPS . . . C 2 20.978 -21.754 -27.926 1 71.87 ? C10 CPS 402 A 1 HETATM 11 C C11 CPS . . . C 2 17.142 -19.751 -29.842 1 69.76 ? C11 CPS 402 A 1 HETATM 12 C C12 CPS . . . C 2 18.006 -16.027 -29.811 1 73.75 ? C12 CPS 402 A 1 HETATM 13 C C13 CPS . . . C 2 17.989 -15.787 -31.32 1 74.45 ? C13 CPS 402 A 1 HETATM 14 C C14 CPS . . . C 2 18.616 -16.951 -32.082 1 69.99 ? C14 CPS 402 A 1 HETATM 15 C C15 CPS . . . C 2 18.047 -18.309 -31.662 1 68.22 ? C15 CPS 402 A 1 HETATM 16 C C16 CPS . . . C 2 18.754 -19.412 -32.465 1 72.14 ? C16 CPS 402 A 1 HETATM 17 C C17 CPS . . . C 2 20.12 -19.852 -31.927 1 71.6 ? C17 CPS 402 A 1 HETATM 18 C C18 CPS . . . C 2 20.151 -20.005 -30.398 1 69.56 ? C18 CPS 402 A 1 HETATM 19 C C19 CPS . . . C 2 19.514 -18.806 -29.661 1 68.54 ? C19 CPS 402 A 1 HETATM 20 C C20 CPS . . . C 2 23.791 -21.614 -27.176 1 70.77 ? C20 CPS 402 A 1 HETATM 21 C C21 CPS . . . C 2 25.326 -21.598 -27.135 1 70.9 ? C21 CPS 402 A 1 HETATM 22 O O2 CPS . . . C 2 18.741 -14.605 -31.609 1 78.98 ? O2 CPS 402 A 1 HETATM 23 O O3 CPS . . . C 2 21.129 -18.927 -32.373 1 67.22 ? O3 CPS 402 A 1 HETATM 24 O O4 CPS . . . C 2 21.982 -18.123 -27.801 1 71.92 ? O4 CPS 402 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #