data_5YIE
#
_model_server_result.job_id            F9-BWWNLbGb4En_j2fCd5Q 
_model_server_result.datetime_utc      '2024-11-13 04:43:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yie 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    5YIE 
#
_exptl.entry_id    5YIE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YIE 
_cell.length_a            106.6 
_cell.length_b            106.6 
_cell.length_c            72.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YIE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 45 A CYS 49 1_555 A SG CYS 50 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 247 A CYS 251 1_555 A SG CYS 283 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc1 A OD1 ASP 32 A ASP 36 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc2 A OD2 ASP 212 A ASP 216 1_555 E NA NA . A NA 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc3 D O23 8VF . A 8VF 403 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? 
metalc ? metalc4 D O26 8VF . A 8VF 403 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YIE 
_atom_sites.fract_transf_matrix[1][1]    0.009381 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009381 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01385 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CPS A 1 401 1 CPS CPS . 
C 2 CPS A 1 402 2 CPS CPS . 
D 3 8VF A 1 403 1 8VF 742 . 
E 4 NA A 1 404 1 NA NA . 
F 5 HOH A 1 501 47 HOH HOH . 
F 5 HOH A 2 502 51 HOH HOH . 
F 5 HOH A 3 503 150 HOH HOH . 
F 5 HOH A 4 504 48 HOH HOH . 
F 5 HOH A 5 505 60 HOH HOH . 
F 5 HOH A 6 506 37 HOH HOH . 
F 5 HOH A 7 507 42 HOH HOH . 
F 5 HOH A 8 508 71 HOH HOH . 
F 5 HOH A 9 509 52 HOH HOH . 
F 5 HOH A 10 510 23 HOH HOH . 
F 5 HOH A 11 511 61 HOH HOH . 
F 5 HOH A 12 512 55 HOH HOH . 
F 5 HOH A 13 513 86 HOH HOH . 
F 5 HOH A 14 514 15 HOH HOH . 
F 5 HOH A 15 515 1 HOH HOH . 
F 5 HOH A 16 516 149 HOH HOH . 
F 5 HOH A 17 517 45 HOH HOH . 
F 5 HOH A 18 518 49 HOH HOH . 
F 5 HOH A 19 519 41 HOH HOH . 
F 5 HOH A 20 520 36 HOH HOH . 
F 5 HOH A 21 521 19 HOH HOH . 
F 5 HOH A 22 522 208 HOH HOH . 
F 5 HOH A 23 523 138 HOH HOH . 
F 5 HOH A 24 524 29 HOH HOH . 
F 5 HOH A 25 525 21 HOH HOH . 
F 5 HOH A 26 526 171 HOH HOH . 
F 5 HOH A 27 527 56 HOH HOH . 
F 5 HOH A 28 528 9 HOH HOH . 
F 5 HOH A 29 529 34 HOH HOH . 
F 5 HOH A 30 530 178 HOH HOH . 
F 5 HOH A 31 531 12 HOH HOH . 
F 5 HOH A 32 532 58 HOH HOH . 
F 5 HOH A 33 533 153 HOH HOH . 
F 5 HOH A 34 534 38 HOH HOH . 
F 5 HOH A 35 535 39 HOH HOH . 
F 5 HOH A 36 536 43 HOH HOH . 
F 5 HOH A 37 537 30 HOH HOH . 
F 5 HOH A 38 538 33 HOH HOH . 
F 5 HOH A 39 539 181 HOH HOH . 
F 5 HOH A 40 540 46 HOH HOH . 
F 5 HOH A 41 541 44 HOH HOH . 
F 5 HOH A 42 542 35 HOH HOH . 
F 5 HOH A 43 543 2 HOH HOH . 
F 5 HOH A 44 544 130 HOH HOH . 
F 5 HOH A 45 545 14 HOH HOH . 
F 5 HOH A 46 546 25 HOH HOH . 
F 5 HOH A 47 547 121 HOH HOH . 
F 5 HOH A 48 548 54 HOH HOH . 
F 5 HOH A 49 549 26 HOH HOH . 
F 5 HOH A 50 550 206 HOH HOH . 
F 5 HOH A 51 551 62 HOH HOH . 
F 5 HOH A 52 552 106 HOH HOH . 
F 5 HOH A 53 553 4 HOH HOH . 
F 5 HOH A 54 554 57 HOH HOH . 
F 5 HOH A 55 555 10 HOH HOH . 
F 5 HOH A 56 556 24 HOH HOH . 
F 5 HOH A 57 557 163 HOH HOH . 
F 5 HOH A 58 558 198 HOH HOH . 
F 5 HOH A 59 559 123 HOH HOH . 
F 5 HOH A 60 560 97 HOH HOH . 
F 5 HOH A 61 561 27 HOH HOH . 
F 5 HOH A 62 562 6 HOH HOH . 
F 5 HOH A 63 563 194 HOH HOH . 
F 5 HOH A 64 564 177 HOH HOH . 
F 5 HOH A 65 565 105 HOH HOH . 
F 5 HOH A 66 566 40 HOH HOH . 
F 5 HOH A 67 567 11 HOH HOH . 
F 5 HOH A 68 568 28 HOH HOH . 
F 5 HOH A 69 569 200 HOH HOH . 
F 5 HOH A 70 570 151 HOH HOH . 
F 5 HOH A 71 571 68 HOH HOH . 
F 5 HOH A 72 572 173 HOH HOH . 
F 5 HOH A 73 573 20 HOH HOH . 
F 5 HOH A 74 574 174 HOH HOH . 
F 5 HOH A 75 575 50 HOH HOH . 
F 5 HOH A 76 576 147 HOH HOH . 
F 5 HOH A 77 577 53 HOH HOH . 
F 5 HOH A 78 578 22 HOH HOH . 
F 5 HOH A 79 579 184 HOH HOH . 
F 5 HOH A 80 580 7 HOH HOH . 
F 5 HOH A 81 581 87 HOH HOH . 
F 5 HOH A 82 582 188 HOH HOH . 
F 5 HOH A 83 583 154 HOH HOH . 
F 5 HOH A 84 584 118 HOH HOH . 
F 5 HOH A 85 585 137 HOH HOH . 
F 5 HOH A 86 586 95 HOH HOH . 
F 5 HOH A 87 587 220 HOH HOH . 
F 5 HOH A 88 588 84 HOH HOH . 
F 5 HOH A 89 589 65 HOH HOH . 
F 5 HOH A 90 590 102 HOH HOH . 
F 5 HOH A 91 591 63 HOH HOH . 
F 5 HOH A 92 592 180 HOH HOH . 
F 5 HOH A 93 593 31 HOH HOH . 
F 5 HOH A 94 594 169 HOH HOH . 
F 5 HOH A 95 595 81 HOH HOH . 
F 5 HOH A 96 596 217 HOH HOH . 
F 5 HOH A 97 597 161 HOH HOH . 
F 5 HOH A 98 598 166 HOH HOH . 
F 5 HOH A 99 599 67 HOH HOH . 
F 5 HOH A 100 600 72 HOH HOH . 
F 5 HOH A 101 601 211 HOH HOH . 
F 5 HOH A 102 602 143 HOH HOH . 
F 5 HOH A 103 603 212 HOH HOH . 
F 5 HOH A 104 604 75 HOH HOH . 
F 5 HOH A 105 605 82 HOH HOH . 
F 5 HOH A 106 606 183 HOH HOH . 
F 5 HOH A 107 607 8 HOH HOH . 
F 5 HOH A 108 608 185 HOH HOH . 
F 5 HOH A 109 609 207 HOH HOH . 
F 5 HOH A 110 610 59 HOH HOH . 
F 5 HOH A 111 611 213 HOH HOH . 
F 5 HOH A 112 612 221 HOH HOH . 
F 5 HOH A 113 613 78 HOH HOH . 
F 5 HOH A 114 614 201 HOH HOH . 
F 5 HOH A 115 615 205 HOH HOH . 
F 5 HOH A 116 616 187 HOH HOH . 
F 5 HOH A 117 617 186 HOH HOH . 
F 5 HOH A 118 618 162 HOH HOH . 
F 5 HOH A 119 619 172 HOH HOH . 
F 5 HOH A 120 620 113 HOH HOH . 
F 5 HOH A 121 621 214 HOH HOH . 
F 5 HOH A 122 622 222 HOH HOH . 
F 5 HOH A 123 623 89 HOH HOH . 
F 5 HOH A 124 624 215 HOH HOH . 
F 5 HOH A 125 625 83 HOH HOH . 
F 5 HOH A 126 626 196 HOH HOH . 
F 5 HOH A 127 627 176 HOH HOH . 
F 5 HOH A 128 628 17 HOH HOH . 
F 5 HOH A 129 629 218 HOH HOH . 
F 5 HOH A 130 630 193 HOH HOH . 
F 5 HOH A 131 631 192 HOH HOH . 
F 5 HOH A 132 632 203 HOH HOH . 
F 5 HOH A 133 633 199 HOH HOH . 
F 5 HOH A 134 634 204 HOH HOH . 
F 5 HOH A 135 635 3 HOH HOH . 
F 5 HOH A 136 636 210 HOH HOH . 
F 5 HOH A 137 637 197 HOH HOH . 
F 5 HOH A 138 638 32 HOH HOH . 
F 5 HOH A 139 639 164 HOH HOH . 
F 5 HOH A 140 640 167 HOH HOH . 
F 5 HOH A 141 641 223 HOH HOH . 
F 5 HOH A 142 642 209 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               15.325 
_atom_site.Cartn_y               -29.432 
_atom_site.Cartn_z               -24.429 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        46.53 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           404 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           1 
#