data_5YIG # _model_server_result.job_id BFJbSppzuM8MQbdC0pujJg _model_server_result.datetime_utc '2024-11-28 17:22:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yig # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5YIG # _exptl.entry_id 5YIG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 601.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ethyl-3-[5-[2-[(1S,5R)-3-methyl-3,8-diazabicyclo[3.2.1]octan-8-yl]-5-(2-oxidanylidene-3H-1,3,4-oxadiazol-5-yl)pyridin-3-yl]-4-[4-(trifluoromethyl)-1,3-thiazol-2-yl]pyridin-2-yl]urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.03 _cell.angle_gamma 90 _cell.entry_id 5YIG _cell.length_a 43.394 _cell.length_b 61.98 _cell.length_c 84.824 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H26 F3 N9 O3 S' _chem_comp.formula_weight 601.603 _chem_comp.id 54B _chem_comp.mon_nstd_flag . _chem_comp.name 1-ethyl-3-[5-[2-[(1S,5R)-3-methyl-3,8-diazabicyclo[3.2.1]octan-8-yl]-5-(2-oxidanylidene-3H-1,3,4-oxadiazol-5-yl)pyridin-3-yl]-4-[4-(trifluoromethyl)-1,3-thiazol-2-yl]pyridin-2-yl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FBL CBK 54B sing 1 n n CBK FBM 54B sing 2 n n CBK FBN 54B sing 3 n n CBK CBJ 54B sing 4 n n CBJ NBO 54B sing 5 n y CBJ CBI 54B doub 6 n y NBO CBH 54B doub 7 n y CBI SBP 54B sing 8 n y SBP CBH 54B sing 9 n y CBH CBF 54B sing 10 n n CBF CBE 54B doub 11 n y CBF CAU 54B sing 12 n y CBE CAX 54B sing 13 n y CAX NAY 54B sing 14 n n CAX NAW 54B doub 15 n y NAY CAZ 54B sing 16 n n CAZ OBA 54B doub 17 n n CAZ NBB 54B sing 18 n n NBB CBC 54B sing 19 n n CBC CBD 54B sing 20 n n NAW CAV 54B sing 21 n y CAV CAU 54B doub 22 n y CAU CAT 54B sing 23 n n CAT CAS 54B doub 24 n y CAT CAI 54B sing 25 n y CAS CAL 54B sing 26 n y CAL CAM 54B sing 27 n n CAL CAK 54B doub 28 n y CAM OAN 54B sing 29 n n CAM NAR 54B doub 30 n n OAN CAO 54B sing 31 n n CAO OAP 54B doub 32 n n CAO NAQ 54B sing 33 n n NAQ NAR 54B sing 34 n n CAK NAJ 54B sing 35 n y NAJ CAI 54B doub 36 n y CAI NAH 54B sing 37 n n NAH CAC 54B sing 38 n n NAH CAG 54B sing 39 n n CAC CAB 54B sing 40 n n CAC CAD 54B sing 41 n n CAB CAA 54B sing 42 n n CAA CAG 54B sing 43 n n CAG CAF 54B sing 44 n n CAF NAE 54B sing 45 n n NAE CBG 54B sing 46 n n NAE CAD 54B sing 47 n n CBI H1 54B sing 48 n n CBE H4 54B sing 49 n n NAY H5 54B sing 50 n n NBB H6 54B sing 51 n n CBC H7 54B sing 52 n n CBC H8 54B sing 53 n n CBD H9 54B sing 54 n n CBD H10 54B sing 55 n n CBD H11 54B sing 56 n n CAV H12 54B sing 57 n n CAS H13 54B sing 58 n n NAQ H14 54B sing 59 n n CAK H15 54B sing 60 n n CAC H16 54B sing 61 n n CAB H17 54B sing 62 n n CAB H18 54B sing 63 n n CAA H19 54B sing 64 n n CAA H20 54B sing 65 n n CAG H21 54B sing 66 n n CAF H22 54B sing 67 n n CAF H23 54B sing 68 n n CBG H25 54B sing 69 n n CBG H26 54B sing 70 n n CBG H27 54B sing 71 n n CAD H28 54B sing 72 n n CAD H29 54B sing 73 n n # _atom_sites.entry_id 5YIG _atom_sites.fract_transf_matrix[1][1] 0.023045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003664 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 54B A 1 301 1 54B UNK . D 2 54B B 1 301 1 54B UNK . E 3 HOH A 1 401 4 HOH HOH . E 3 HOH A 2 402 1 HOH HOH . E 3 HOH A 3 403 3 HOH HOH . E 3 HOH A 4 404 5 HOH HOH . F 3 HOH B 1 401 2 HOH HOH . F 3 HOH B 2 402 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FBL 54B . . . C 2 36.749 6.674 41.412 1 25.07 ? FBL 54B 301 A 1 HETATM 2 C CBK 54B . . . C 2 36.724 5.671 40.526 1 34.68 ? CBK 54B 301 A 1 HETATM 3 F FBM 54B . . . C 2 35.821 4.755 40.901 1 27.95 ? FBM 54B 301 A 1 HETATM 4 F FBN 54B . . . C 2 37.97 5.095 40.43 1 38.52 ? FBN 54B 301 A 1 HETATM 5 C CBJ 54B . . . C 2 36.333 6.243 39.17 1 34.46 ? CBJ 54B 301 A 1 HETATM 6 N NBO 54B . . . C 2 36.647 5.63 38.009 1 35.31 ? NBO 54B 301 A 1 HETATM 7 C CBI 54B . . . C 2 35.66 7.396 39.073 1 35.09 ? CBI 54B 301 A 1 HETATM 8 S SBP 54B . . . C 2 35.448 7.657 37.456 1 45.15 ? SBP 54B 301 A 1 HETATM 9 C CBH 54B . . . C 2 36.191 6.29 36.943 1 28.96 ? CBH 54B 301 A 1 HETATM 10 C CBF 54B . . . C 2 36.385 5.936 35.671 1 26.38 ? CBF 54B 301 A 1 HETATM 11 C CBE 54B . . . C 2 37.609 5.335 35.346 1 28.43 ? CBE 54B 301 A 1 HETATM 12 C CAX 54B . . . C 2 37.913 4.947 34.034 1 23.65 ? CAX 54B 301 A 1 HETATM 13 N NAY 54B . . . C 2 39.046 4.367 33.604 1 17.54 ? NAY 54B 301 A 1 HETATM 14 C CAZ 54B . . . C 2 39.774 3.521 34.352 1 19.25 ? CAZ 54B 301 A 1 HETATM 15 O OBA 54B . . . C 2 39.483 3.219 35.504 1 19.15 ? OBA 54B 301 A 1 HETATM 16 N NBB 54B . . . C 2 40.872 3.013 33.776 1 20.92 ? NBB 54B 301 A 1 HETATM 17 C CBC 54B . . . C 2 41.762 2.083 34.484 1 13.58 ? CBC 54B 301 A 1 HETATM 18 C CBD 54B . . . C 2 42.819 1.567 33.508 1 12.91 ? CBD 54B 301 A 1 HETATM 19 N NAW 54B . . . C 2 37.021 5.191 33.083 1 20.94 ? NAW 54B 301 A 1 HETATM 20 C CAV 54B . . . C 2 35.809 5.799 33.37 1 22.94 ? CAV 54B 301 A 1 HETATM 21 C CAU 54B . . . C 2 35.467 6.183 34.642 1 24.38 ? CAU 54B 301 A 1 HETATM 22 C CAT 54B . . . C 2 34.192 6.744 34.726 1 25.88 ? CAT 54B 301 A 1 HETATM 23 C CAS 54B . . . C 2 33.916 7.878 33.966 1 25.15 ? CAS 54B 301 A 1 HETATM 24 C CAL 54B . . . C 2 32.656 8.464 34.003 1 20.79 ? CAL 54B 301 A 1 HETATM 25 C CAM 54B . . . C 2 32.363 9.542 33.276 1 25.79 ? CAM 54B 301 A 1 HETATM 26 O OAN 54B . . . C 2 31.172 10.153 33.292 1 25.12 ? OAN 54B 301 A 1 HETATM 27 C CAO 54B . . . C 2 31.274 11.143 32.399 1 24.94 ? CAO 54B 301 A 1 HETATM 28 O OAP 54B . . . C 2 30.378 11.945 32.146 1 30.89 ? OAP 54B 301 A 1 HETATM 29 N NAQ 54B . . . C 2 32.473 11.136 31.825 1 19.84 ? NAQ 54B 301 A 1 HETATM 30 N NAR 54B . . . C 2 33.158 10.114 32.371 1 29.64 ? NAR 54B 301 A 1 HETATM 31 C CAK 54B . . . C 2 31.664 7.874 34.769 1 23.95 ? CAK 54B 301 A 1 HETATM 32 N NAJ 54B . . . C 2 31.951 6.727 35.507 1 24.28 ? NAJ 54B 301 A 1 HETATM 33 C CAI 54B . . . C 2 33.169 6.17 35.496 1 24.58 ? CAI 54B 301 A 1 HETATM 34 N NAH 54B . . . C 2 33.294 5.057 36.213 1 27.15 ? NAH 54B 301 A 1 HETATM 35 C CAC 54B . . . C 2 32.516 4.71 37.4 1 24.08 ? CAC 54B 301 A 1 HETATM 36 C CAB 54B . . . C 2 31.558 3.722 36.743 1 26.86 ? CAB 54B 301 A 1 HETATM 37 C CAA 54B . . . C 2 32.374 3.093 35.579 1 16.97 ? CAA 54B 301 A 1 HETATM 38 C CAG 54B . . . C 2 33.736 3.737 35.706 1 26.2 ? CAG 54B 301 A 1 HETATM 39 C CAF 54B . . . C 2 34.572 2.961 36.705 1 25.04 ? CAF 54B 301 A 1 HETATM 40 N NAE 54B . . . C 2 33.781 2.684 37.903 1 20.91 ? NAE 54B 301 A 1 HETATM 41 C CBG 54B . . . C 2 34.583 1.951 38.892 1 22.19 ? CBG 54B 301 A 1 HETATM 42 C CAD 54B . . . C 2 33.328 3.968 38.445 1 27.72 ? CAD 54B 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #