data_5YIG
#
_model_server_result.job_id            ne7Yahsrd7WkmbEQp320dg 
_model_server_result.datetime_utc      '2024-11-25 00:15:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yig 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    5YIG 
#
_exptl.entry_id    5YIG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              601.603 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-ethyl-3-[5-[2-[(1S,5R)-3-methyl-3,8-diazabicyclo[3.2.1]octan-8-yl]-5-(2-oxidanylidene-3H-1,3,4-oxadiazol-5-yl)pyridin-3-yl]-4-[4-(trifluoromethyl)-1,3-thiazol-2-yl]pyridin-2-yl]urea 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.03 
_cell.angle_gamma         90 
_cell.entry_id            5YIG 
_cell.length_a            43.394 
_cell.length_b            61.98 
_cell.length_c            84.824 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YIG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C26 H26 F3 N9 O3 S' 
_chem_comp.formula_weight    601.603 
_chem_comp.id                54B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-ethyl-3-[5-[2-[(1S,5R)-3-methyl-3,8-diazabicyclo[3.2.1]octan-8-yl]-5-(2-oxidanylidene-3H-1,3,4-oxadiazol-5-yl)pyridin-3-yl]-4-[4-(trifluoromethyl)-1,3-thiazol-2-yl]pyridin-2-yl]urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FBL CBK 54B sing 1 n n 
CBK FBM 54B sing 2 n n 
CBK FBN 54B sing 3 n n 
CBK CBJ 54B sing 4 n n 
CBJ NBO 54B sing 5 n y 
CBJ CBI 54B doub 6 n y 
NBO CBH 54B doub 7 n y 
CBI SBP 54B sing 8 n y 
SBP CBH 54B sing 9 n y 
CBH CBF 54B sing 10 n n 
CBF CBE 54B doub 11 n y 
CBF CAU 54B sing 12 n y 
CBE CAX 54B sing 13 n y 
CAX NAY 54B sing 14 n n 
CAX NAW 54B doub 15 n y 
NAY CAZ 54B sing 16 n n 
CAZ OBA 54B doub 17 n n 
CAZ NBB 54B sing 18 n n 
NBB CBC 54B sing 19 n n 
CBC CBD 54B sing 20 n n 
NAW CAV 54B sing 21 n y 
CAV CAU 54B doub 22 n y 
CAU CAT 54B sing 23 n n 
CAT CAS 54B doub 24 n y 
CAT CAI 54B sing 25 n y 
CAS CAL 54B sing 26 n y 
CAL CAM 54B sing 27 n n 
CAL CAK 54B doub 28 n y 
CAM OAN 54B sing 29 n n 
CAM NAR 54B doub 30 n n 
OAN CAO 54B sing 31 n n 
CAO OAP 54B doub 32 n n 
CAO NAQ 54B sing 33 n n 
NAQ NAR 54B sing 34 n n 
CAK NAJ 54B sing 35 n y 
NAJ CAI 54B doub 36 n y 
CAI NAH 54B sing 37 n n 
NAH CAC 54B sing 38 n n 
NAH CAG 54B sing 39 n n 
CAC CAB 54B sing 40 n n 
CAC CAD 54B sing 41 n n 
CAB CAA 54B sing 42 n n 
CAA CAG 54B sing 43 n n 
CAG CAF 54B sing 44 n n 
CAF NAE 54B sing 45 n n 
NAE CBG 54B sing 46 n n 
NAE CAD 54B sing 47 n n 
CBI H1 54B sing 48 n n 
CBE H4 54B sing 49 n n 
NAY H5 54B sing 50 n n 
NBB H6 54B sing 51 n n 
CBC H7 54B sing 52 n n 
CBC H8 54B sing 53 n n 
CBD H9 54B sing 54 n n 
CBD H10 54B sing 55 n n 
CBD H11 54B sing 56 n n 
CAV H12 54B sing 57 n n 
CAS H13 54B sing 58 n n 
NAQ H14 54B sing 59 n n 
CAK H15 54B sing 60 n n 
CAC H16 54B sing 61 n n 
CAB H17 54B sing 62 n n 
CAB H18 54B sing 63 n n 
CAA H19 54B sing 64 n n 
CAA H20 54B sing 65 n n 
CAG H21 54B sing 66 n n 
CAF H22 54B sing 67 n n 
CAF H23 54B sing 68 n n 
CBG H25 54B sing 69 n n 
CBG H26 54B sing 70 n n 
CBG H27 54B sing 71 n n 
CAD H28 54B sing 72 n n 
CAD H29 54B sing 73 n n 
#
_atom_sites.entry_id                     5YIG 
_atom_sites.fract_transf_matrix[1][1]    0.023045 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003664 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016134 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011937 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 54B A 1 301 1 54B UNK . 
D 2 54B B 1 301 1 54B UNK . 
E 3 HOH A 1 401 4 HOH HOH . 
E 3 HOH A 2 402 1 HOH HOH . 
E 3 HOH A 3 403 3 HOH HOH . 
E 3 HOH A 4 404 5 HOH HOH . 
F 3 HOH B 1 401 2 HOH HOH . 
F 3 HOH B 2 402 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F FBL 54B . . . D 2 64.887 -5.983 0.232 1 24.13 ? FBL 54B 301 B 1 
HETATM 2 C CBK 54B . . . D 2 64.057 -5.001 0.658 1 39.22 ? CBK 54B 301 B 1 
HETATM 3 F FBM 54B . . . D 2 63.86 -4.101 -0.341 1 27.87 ? FBM 54B 301 B 1 
HETATM 4 F FBN 54B . . . D 2 64.631 -4.385 1.719 1 49.19 ? FBN 54B 301 B 1 
HETATM 5 C CBJ 54B . . . D 2 62.693 -5.605 1.07 1 25.83 ? CBJ 54B 301 B 1 
HETATM 6 N NBO 54B . . . D 2 61.799 -4.957 1.851 1 29.29 ? NBO 54B 301 B 1 
HETATM 7 C CBI 54B . . . D 2 62.317 -6.821 0.667 1 22.87 ? CBI 54B 301 B 1 
HETATM 8 S SBP 54B . . . D 2 60.823 -7.077 1.316 1 31.35 ? SBP 54B 301 B 1 
HETATM 9 C CBH 54B . . . D 2 60.673 -5.645 2.078 1 28.31 ? CBH 54B 301 B 1 
HETATM 10 C CBF 54B . . . D 2 59.647 -5.23 2.846 1 26.81 ? CBF 54B 301 B 1 
HETATM 11 C CBE 54B . . . D 2 59.953 -4.463 3.975 1 24.1 ? CBE 54B 301 B 1 
HETATM 12 C CAX 54B . . . D 2 58.964 -3.998 4.85 1 27.43 ? CAX 54B 301 B 1 
HETATM 13 N NAY 54B . . . D 2 59.16 -3.243 5.94 1 30.5 ? NAY 54B 301 B 1 
HETATM 14 C CAZ 54B . . . D 2 60.305 -2.598 6.263 1 29.05 ? CAZ 54B 301 B 1 
HETATM 15 O OBA 54B . . . D 2 61.367 -2.667 5.641 1 24.53 ? OBA 54B 301 B 1 
HETATM 16 N NBB 54B . . . D 2 60.217 -1.854 7.368 1 22.5 ? NBB 54B 301 B 1 
HETATM 17 C CBC 54B . . . D 2 61.343 -1.1 7.909 1 19.48 ? CBC 54B 301 B 1 
HETATM 18 C CBD 54B . . . D 2 60.922 -0.564 9.273 1 21.83 ? CBD 54B 301 B 1 
HETATM 19 N NAW 54B . . . D 2 57.683 -4.288 4.603 1 21.1 ? NAW 54B 301 B 1 
HETATM 20 C CAV 54B . . . D 2 57.339 -5.054 3.498 1 26.05 ? CAV 54B 301 B 1 
HETATM 21 C CAU 54B . . . D 2 58.295 -5.54 2.621 1 27.68 ? CAU 54B 301 B 1 
HETATM 22 C CAT 54B . . . D 2 57.789 -6.265 1.545 1 34.11 ? CAT 54B 301 B 1 
HETATM 23 C CAS 54B . . . D 2 57.091 -7.451 1.773 1 38.75 ? CAS 54B 301 B 1 
HETATM 24 C CAL 54B . . . D 2 56.578 -8.166 0.694 1 35.95 ? CAL 54B 301 B 1 
HETATM 25 C CAM 54B . . . D 2 55.896 -9.295 0.866 1 47.03 ? CAM 54B 301 B 1 
HETATM 26 O OAN 54B . . . D 2 55.466 -10.077 -0.137 1 74.55 ? OAN 54B 301 B 1 
HETATM 27 C CAO 54B . . . D 2 54.797 -11.075 0.461 1 51 ? CAO 54B 301 B 1 
HETATM 28 O OAP 54B . . . D 2 54.26 -12.012 -0.127 1 49.33 ? OAP 54B 301 B 1 
HETATM 29 N NAQ 54B . . . D 2 54.794 -10.905 1.779 1 49.25 ? NAQ 54B 301 B 1 
HETATM 30 N NAR 54B . . . D 2 55.479 -9.775 2.034 1 57.24 ? NAR 54B 301 B 1 
HETATM 31 C CAK 54B . . . D 2 56.735 -7.672 -0.591 1 33.86 ? CAK 54B 301 B 1 
HETATM 32 N NAJ 54B . . . D 2 57.418 -6.477 -0.795 1 34.23 ? NAJ 54B 301 B 1 
HETATM 33 C CAI 54B . . . D 2 57.931 -5.787 0.235 1 35.57 ? CAI 54B 301 B 1 
HETATM 34 N NAH 54B . . . D 2 58.547 -4.646 -0.071 1 34.53 ? NAH 54B 301 B 1 
HETATM 35 C CAC 54B . . . D 2 59.373 -4.42 -1.255 1 24.96 ? CAC 54B 301 B 1 
HETATM 36 C CAB 54B . . . D 2 58.435 -3.498 -2.033 1 25.35 ? CAB 54B 301 B 1 
HETATM 37 C CAA 54B . . . D 2 57.579 -2.794 -0.952 1 29.08 ? CAA 54B 301 B 1 
HETATM 38 C CAG 54B . . . D 2 58.182 -3.272 0.35 1 31.79 ? CAG 54B 301 B 1 
HETATM 39 C CAF 54B . . . D 2 59.399 -2.429 0.696 1 28.58 ? CAF 54B 301 B 1 
HETATM 40 N NAE 54B . . . D 2 60.289 -2.309 -0.461 1 26.08 ? NAE 54B 301 B 1 
HETATM 41 C CBG 54B . . . D 2 61.507 -1.579 -0.092 1 26.58 ? CBG 54B 301 B 1 
HETATM 42 C CAD 54B . . . D 2 60.634 -3.655 -0.925 1 29.83 ? CAD 54B 301 B 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           42 
#