data_5YII # _model_server_result.job_id H6IRp9ysm2iEKYSHf2VQWQ _model_server_result.datetime_utc '2025-02-05 08:54:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5YII # _exptl.entry_id 5YII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.082 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THIOCYANATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YII _cell.length_a 72.256 _cell.length_b 103.044 _cell.length_c 80.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YII _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 103.044 80.83 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C N S -1' _chem_comp.formula_weight 58.082 _chem_comp.id SCN _chem_comp.mon_nstd_flag . _chem_comp.name 'THIOCYANATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C SCN sing 277 n n C N SCN trip 278 n n # _atom_sites.entry_id 5YII _atom_sites.fract_transf_matrix[1][1] 0.01384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SCN A 1 401 1 SCN SCN . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 45 HOH HOH . C 3 HOH A 3 503 135 HOH HOH . C 3 HOH A 4 504 5 HOH HOH . C 3 HOH A 5 505 124 HOH HOH . C 3 HOH A 6 506 136 HOH HOH . C 3 HOH A 7 507 105 HOH HOH . C 3 HOH A 8 508 58 HOH HOH . C 3 HOH A 9 509 16 HOH HOH . C 3 HOH A 10 510 3 HOH HOH . C 3 HOH A 11 511 180 HOH HOH . C 3 HOH A 12 512 46 HOH HOH . C 3 HOH A 13 513 40 HOH HOH . C 3 HOH A 14 514 99 HOH HOH . C 3 HOH A 15 515 83 HOH HOH . C 3 HOH A 16 516 82 HOH HOH . C 3 HOH A 17 517 26 HOH HOH . C 3 HOH A 18 518 20 HOH HOH . C 3 HOH A 19 519 2 HOH HOH . C 3 HOH A 20 520 48 HOH HOH . C 3 HOH A 21 521 74 HOH HOH . C 3 HOH A 22 522 14 HOH HOH . C 3 HOH A 23 523 27 HOH HOH . C 3 HOH A 24 524 125 HOH HOH . C 3 HOH A 25 525 152 HOH HOH . C 3 HOH A 26 526 54 HOH HOH . C 3 HOH A 27 527 11 HOH HOH . C 3 HOH A 28 528 144 HOH HOH . C 3 HOH A 29 529 33 HOH HOH . C 3 HOH A 30 530 34 HOH HOH . C 3 HOH A 31 531 1 HOH HOH . C 3 HOH A 32 532 31 HOH HOH . C 3 HOH A 33 533 244 HOH HOH . C 3 HOH A 34 534 21 HOH HOH . C 3 HOH A 35 535 7 HOH HOH . C 3 HOH A 36 536 3 HOH HOH . C 3 HOH A 37 537 5 HOH HOH . C 3 HOH A 38 538 102 HOH HOH . C 3 HOH A 39 539 75 HOH HOH . C 3 HOH A 40 540 88 HOH HOH . C 3 HOH A 41 541 118 HOH HOH . C 3 HOH A 42 542 5 HOH HOH . C 3 HOH A 43 543 103 HOH HOH . C 3 HOH A 44 544 63 HOH HOH . C 3 HOH A 45 545 1 HOH HOH . C 3 HOH A 46 546 6 HOH HOH . C 3 HOH A 47 547 23 HOH HOH . C 3 HOH A 48 548 4 HOH HOH . C 3 HOH A 49 549 37 HOH HOH . C 3 HOH A 50 550 77 HOH HOH . C 3 HOH A 51 551 113 HOH HOH . C 3 HOH A 52 552 70 HOH HOH . C 3 HOH A 53 553 15 HOH HOH . C 3 HOH A 54 554 10 HOH HOH . C 3 HOH A 55 555 57 HOH HOH . C 3 HOH A 56 556 73 HOH HOH . C 3 HOH A 57 557 38 HOH HOH . C 3 HOH A 58 558 81 HOH HOH . C 3 HOH A 59 559 28 HOH HOH . C 3 HOH A 60 560 36 HOH HOH . C 3 HOH A 61 561 133 HOH HOH . C 3 HOH A 62 562 60 HOH HOH . C 3 HOH A 63 563 4 HOH HOH . C 3 HOH A 64 564 89 HOH HOH . C 3 HOH A 65 565 164 HOH HOH . C 3 HOH A 66 566 95 HOH HOH . C 3 HOH A 67 567 32 HOH HOH . C 3 HOH A 68 568 80 HOH HOH . C 3 HOH A 69 569 43 HOH HOH . C 3 HOH A 70 570 29 HOH HOH . C 3 HOH A 71 571 2 HOH HOH . C 3 HOH A 72 572 41 HOH HOH . C 3 HOH A 73 573 56 HOH HOH . C 3 HOH A 74 574 44 HOH HOH . C 3 HOH A 75 575 51 HOH HOH . C 3 HOH A 76 576 9 HOH HOH . C 3 HOH A 77 577 64 HOH HOH . C 3 HOH A 78 578 79 HOH HOH . C 3 HOH A 79 579 84 HOH HOH . C 3 HOH A 80 580 129 HOH HOH . C 3 HOH A 81 581 90 HOH HOH . C 3 HOH A 82 582 6 HOH HOH . C 3 HOH A 83 583 248 HOH HOH . C 3 HOH A 84 584 52 HOH HOH . C 3 HOH A 85 585 1 HOH HOH . C 3 HOH A 86 586 238 HOH HOH . C 3 HOH A 87 587 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SCN . . . B 2 23.55 42.6 35.673 1 43.65 ? S SCN 401 A 1 HETATM 2 C C SCN . . . B 2 24.363 41.315 35.864 1 42.51 ? C SCN 401 A 1 HETATM 3 N N SCN . . . B 2 24.941 40.308 36.001 1 24.28 ? N SCN 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #