data_5YIJ
#
_model_server_result.job_id            v2H1vrl6tfbO7chDLT9Ccg 
_model_server_result.datetime_utc      '2025-07-07 21:59:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yij 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1201}' 
#
_entry.id    5YIJ 
#
_exptl.entry_id    5YIJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.82 
_cell.angle_gamma         90 
_cell.entry_id            5YIJ 
_cell.length_a            107.779 
_cell.length_b            145.851 
_cell.length_c            103.349 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YIJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 235 n n 
PA O2A NAI sing 236 n n 
PA O5B NAI sing 237 n n 
PA O3 NAI sing 238 n n 
O2A HOA2 NAI sing 239 n n 
O5B C5B NAI sing 240 n n 
C5B C4B NAI sing 241 n n 
C5B H51A NAI sing 242 n n 
C5B H52A NAI sing 243 n n 
C4B O4B NAI sing 244 n n 
C4B C3B NAI sing 245 n n 
C4B H4B NAI sing 246 n n 
O4B C1B NAI sing 247 n n 
C3B O3B NAI sing 248 n n 
C3B C2B NAI sing 249 n n 
C3B H3B NAI sing 250 n n 
O3B HO3A NAI sing 251 n n 
C2B O2B NAI sing 252 n n 
C2B C1B NAI sing 253 n n 
C2B H2B NAI sing 254 n n 
O2B HO2A NAI sing 255 n n 
C1B N9A NAI sing 256 n n 
C1B H1B NAI sing 257 n n 
N9A C8A NAI sing 258 n y 
N9A C4A NAI sing 259 n y 
C8A N7A NAI doub 260 n y 
C8A H8A NAI sing 261 n n 
N7A C5A NAI sing 262 n y 
C5A C6A NAI sing 263 n y 
C5A C4A NAI doub 264 n y 
C6A N6A NAI sing 265 n n 
C6A N1A NAI doub 266 n y 
N6A H61A NAI sing 267 n n 
N6A H62A NAI sing 268 n n 
N1A C2A NAI sing 269 n y 
C2A N3A NAI doub 270 n y 
C2A H2A NAI sing 271 n n 
N3A C4A NAI sing 272 n y 
O3 PN NAI sing 273 n n 
PN O1N NAI sing 274 n n 
PN O2N NAI doub 275 n n 
PN O5D NAI sing 276 n n 
O1N HO1N NAI sing 277 n n 
O5D C5D NAI sing 278 n n 
C5D C4D NAI sing 279 n n 
C5D H51N NAI sing 280 n n 
C5D H52N NAI sing 281 n n 
C4D O4D NAI sing 282 n n 
C4D C3D NAI sing 283 n n 
C4D H4D NAI sing 284 n n 
O4D C1D NAI sing 285 n n 
C3D O3D NAI sing 286 n n 
C3D C2D NAI sing 287 n n 
C3D H3D NAI sing 288 n n 
O3D HO3N NAI sing 289 n n 
C2D O2D NAI sing 290 n n 
C2D C1D NAI sing 291 n n 
C2D H2D NAI sing 292 n n 
O2D HO2N NAI sing 293 n n 
C1D N1N NAI sing 294 n n 
C1D H1D NAI sing 295 n n 
N1N C2N NAI sing 296 n n 
N1N C6N NAI sing 297 n n 
C2N C3N NAI doub 298 n n 
C2N H2N NAI sing 299 n n 
C3N C7N NAI sing 300 n n 
C3N C4N NAI sing 301 n n 
C7N O7N NAI doub 302 n n 
C7N N7N NAI sing 303 n n 
N7N H71N NAI sing 304 n n 
N7N H72N NAI sing 305 n n 
C4N C5N NAI sing 306 n n 
C4N H4N NAI sing 307 n n 
C4N H42N NAI sing 308 n n 
C5N C6N NAI doub 309 n n 
C5N H5N NAI sing 310 n n 
C6N H6N NAI sing 311 n n 
#
_atom_sites.entry_id                     5YIJ 
_atom_sites.fract_transf_matrix[1][1]    0.009278 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002282 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006856 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009964 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          E 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           NAI 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1201 
_pdbx_nonpoly_scheme.auth_seq_num     2 
_pdbx_nonpoly_scheme.pdb_mon_id       NAI 
_pdbx_nonpoly_scheme.auth_mon_id      NAD 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . E 3 377.858 -17.537 337.162 1 37.74 ? PA NAI 1201 A 1 
HETATM 2 O O1A NAI . . . E 3 378.34 -18.754 336.536 1 56.72 ? O1A NAI 1201 A 1 
HETATM 3 O O2A NAI . . . E 3 376.929 -17.451 338.286 1 49.56 -1 O2A NAI 1201 A 1 
HETATM 4 O O5B NAI . . . E 3 377.104 -17.101 335.923 1 44.34 ? O5B NAI 1201 A 1 
HETATM 5 C C5B NAI . . . E 3 377.806 -16.559 334.855 1 49.44 ? C5B NAI 1201 A 1 
HETATM 6 C C4B NAI . . . E 3 377.604 -17.168 333.471 1 45.75 ? C4B NAI 1201 A 1 
HETATM 7 O O4B NAI . . . E 3 376.741 -18.254 333.331 1 42.23 ? O4B NAI 1201 A 1 
HETATM 8 C C3B NAI . . . E 3 377.023 -16.157 332.566 1 45.4 ? C3B NAI 1201 A 1 
HETATM 9 O O3B NAI . . . E 3 378.067 -15.45 331.991 1 46.2 ? O3B NAI 1201 A 1 
HETATM 10 C C2B NAI . . . E 3 376.339 -16.923 331.525 1 45.29 ? C2B NAI 1201 A 1 
HETATM 11 O O2B NAI . . . E 3 377.052 -16.647 330.349 1 50.9 ? O2B NAI 1201 A 1 
HETATM 12 C C1B NAI . . . E 3 376.472 -18.336 331.954 1 44.22 ? C1B NAI 1201 A 1 
HETATM 13 N N9A NAI . . . E 3 375.224 -19.059 331.656 1 48.38 ? N9A NAI 1201 A 1 
HETATM 14 C C8A NAI . . . E 3 375.021 -19.952 330.692 1 53.22 ? C8A NAI 1201 A 1 
HETATM 15 N N7A NAI . . . E 3 373.77 -20.417 330.701 1 42.19 ? N7A NAI 1201 A 1 
HETATM 16 C C5A NAI . . . E 3 373.162 -19.812 331.679 1 37.66 ? C5A NAI 1201 A 1 
HETATM 17 C C6A NAI . . . E 3 371.841 -19.858 332.218 1 41.45 ? C6A NAI 1201 A 1 
HETATM 18 N N6A NAI . . . E 3 370.916 -20.645 331.705 1 34.88 ? N6A NAI 1201 A 1 
HETATM 19 N N1A NAI . . . E 3 371.603 -19.083 333.245 1 51.08 ? N1A NAI 1201 A 1 
HETATM 20 C C2A NAI . . . E 3 372.526 -18.27 333.759 1 48.44 ? C2A NAI 1201 A 1 
HETATM 21 N N3A NAI . . . E 3 373.755 -18.188 333.309 1 42.84 ? N3A NAI 1201 A 1 
HETATM 22 C C4A NAI . . . E 3 374.115 -18.933 332.296 1 41.28 ? C4A NAI 1201 A 1 
HETATM 23 O O3 NAI . . . E 3 378.9 -16.4 337.323 1 87.25 ? O3 NAI 1201 A 1 
HETATM 24 P PN NAI . . . E 3 378.426 -14.931 337.22 1 47.5 ? PN NAI 1201 A 1 
HETATM 25 O O1N NAI . . . E 3 379.023 -14.281 336.064 1 54 ? O1N NAI 1201 A 1 
HETATM 26 O O2N NAI . . . E 3 376.973 -14.911 337.349 1 55.28 ? O2N NAI 1201 A 1 
HETATM 27 O O5D NAI . . . E 3 379.13 -14.205 338.415 1 50.3 ? O5D NAI 1201 A 1 
HETATM 28 C C5D NAI . . . E 3 380.523 -14.387 338.439 1 49.41 ? C5D NAI 1201 A 1 
HETATM 29 C C4D NAI . . . E 3 381.404 -13.487 339.313 1 45.81 ? C4D NAI 1201 A 1 
HETATM 30 O O4D NAI . . . E 3 381.222 -12.111 339.147 1 40.56 ? O4D NAI 1201 A 1 
HETATM 31 C C3D NAI . . . E 3 381.243 -13.651 340.772 1 46.27 ? C3D NAI 1201 A 1 
HETATM 32 O O3D NAI . . . E 3 382.485 -13.331 341.328 1 56.99 ? O3D NAI 1201 A 1 
HETATM 33 C C2D NAI . . . E 3 380.369 -12.573 341.262 1 45.21 ? C2D NAI 1201 A 1 
HETATM 34 O O2D NAI . . . E 3 380.713 -12.256 342.607 1 49.69 ? O2D NAI 1201 A 1 
HETATM 35 C C1D NAI . . . E 3 380.732 -11.488 340.319 1 40.61 ? C1D NAI 1201 A 1 
HETATM 36 N N1N NAI . . . E 3 379.592 -10.645 340.029 1 47.58 ? N1N NAI 1201 A 1 
HETATM 37 C C2N NAI . . . E 3 378.816 -10.906 339.008 1 40.88 ? C2N NAI 1201 A 1 
HETATM 38 C C3N NAI . . . E 3 377.76 -10.133 338.697 1 30.2 ? C3N NAI 1201 A 1 
HETATM 39 C C7N NAI . . . E 3 376.944 -10.478 337.564 1 30.74 ? C7N NAI 1201 A 1 
HETATM 40 O O7N NAI . . . E 3 376.276 -9.642 337.08 1 34.79 ? O7N NAI 1201 A 1 
HETATM 41 N N7N NAI . . . E 3 376.971 -11.695 337.118 1 29.99 ? N7N NAI 1201 A 1 
HETATM 42 C C4N NAI . . . E 3 377.467 -9.06 339.437 1 31.64 ? C4N NAI 1201 A 1 
HETATM 43 C C5N NAI . . . E 3 378.271 -8.792 340.501 1 38.22 ? C5N NAI 1201 A 1 
HETATM 44 C C6N NAI . . . E 3 379.335 -9.608 340.774 1 45.42 ? C6N NAI 1201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#