data_5YIP
#
_model_server_result.job_id            6onXkjHV4ZsHIDV6kaqRTA 
_model_server_result.datetime_utc      '2025-04-25 04:29:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yip 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    5YIP 
#
_exptl.entry_id    5YIP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5YIP 
_cell.length_a            104.172 
_cell.length_b            104.172 
_cell.length_c            63.901 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YIP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     5YIP 
_atom_sites.fract_transf_matrix[1][1]    0.0096 
_atom_sites.fract_transf_matrix[1][2]    0.005542 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011085 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015649 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 201 1 GOL GOL . 
D 4 HOH A 1 301 110 HOH HOH . 
D 4 HOH A 2 302 7 HOH HOH . 
D 4 HOH A 3 303 11 HOH HOH . 
D 4 HOH A 4 304 16 HOH HOH . 
D 4 HOH A 5 305 45 HOH HOH . 
D 4 HOH A 6 306 9 HOH HOH . 
D 4 HOH A 7 307 51 HOH HOH . 
D 4 HOH A 8 308 43 HOH HOH . 
D 4 HOH A 9 309 12 HOH HOH . 
D 4 HOH A 10 310 50 HOH HOH . 
D 4 HOH A 11 311 35 HOH HOH . 
D 4 HOH A 12 312 2 HOH HOH . 
D 4 HOH A 13 313 14 HOH HOH . 
D 4 HOH A 14 314 22 HOH HOH . 
D 4 HOH A 15 315 36 HOH HOH . 
D 4 HOH A 16 316 29 HOH HOH . 
D 4 HOH A 17 317 15 HOH HOH . 
D 4 HOH A 18 318 20 HOH HOH . 
D 4 HOH A 19 319 3 HOH HOH . 
D 4 HOH A 20 320 34 HOH HOH . 
D 4 HOH A 21 321 13 HOH HOH . 
D 4 HOH A 22 322 21 HOH HOH . 
D 4 HOH A 23 323 37 HOH HOH . 
D 4 HOH A 24 324 109 HOH HOH . 
D 4 HOH A 25 325 5 HOH HOH . 
D 4 HOH A 26 326 28 HOH HOH . 
D 4 HOH A 27 327 18 HOH HOH . 
D 4 HOH A 28 328 31 HOH HOH . 
D 4 HOH A 29 329 27 HOH HOH . 
D 4 HOH A 30 330 53 HOH HOH . 
D 4 HOH A 31 331 17 HOH HOH . 
D 4 HOH A 32 332 1 HOH HOH . 
D 4 HOH A 33 333 8 HOH HOH . 
D 4 HOH A 34 334 86 HOH HOH . 
D 4 HOH A 35 335 6 HOH HOH . 
D 4 HOH A 36 336 107 HOH HOH . 
D 4 HOH A 37 337 68 HOH HOH . 
D 4 HOH A 38 338 106 HOH HOH . 
D 4 HOH A 39 339 26 HOH HOH . 
D 4 HOH A 40 340 92 HOH HOH . 
D 4 HOH A 41 341 52 HOH HOH . 
D 4 HOH A 42 342 56 HOH HOH . 
D 4 HOH A 43 343 60 HOH HOH . 
D 4 HOH A 44 344 48 HOH HOH . 
D 4 HOH A 45 345 71 HOH HOH . 
D 4 HOH A 46 346 54 HOH HOH . 
D 4 HOH A 47 347 4 HOH HOH . 
D 4 HOH A 48 348 23 HOH HOH . 
D 4 HOH A 49 349 10 HOH HOH . 
D 4 HOH A 50 350 39 HOH HOH . 
D 4 HOH A 51 351 105 HOH HOH . 
D 4 HOH A 52 352 19 HOH HOH . 
D 4 HOH A 53 353 25 HOH HOH . 
D 4 HOH A 54 354 58 HOH HOH . 
D 4 HOH A 55 355 59 HOH HOH . 
D 4 HOH A 56 356 49 HOH HOH . 
D 4 HOH A 57 357 44 HOH HOH . 
E 4 HOH B 1 2101 30 HOH HOH . 
E 4 HOH B 2 2102 24 HOH HOH . 
E 4 HOH B 3 2103 108 HOH HOH . 
E 4 HOH B 4 2104 33 HOH HOH . 
E 4 HOH B 5 2105 83 HOH HOH . 
E 4 HOH B 6 2106 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -24.696 46.683 77.021 1 64.41 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . C 3 -25.592 46.921 75.962 1 66.92 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . C 3 -25.497 46.84 78.33 1 66.06 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . C 3 -26.429 47.862 78.251 1 68.57 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . C 3 -24.447 47.022 79.481 1 63.48 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . C 3 -23.404 46.116 79.244 1 63.55 ? O3 GOL 201 A 1 
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_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#