data_5YIX
#
_model_server_result.job_id            8bg7MgTWZKkbBXmYKlxpLg 
_model_server_result.datetime_utc      '2024-11-05 01:22:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yix 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5YIX 
#
_exptl.entry_id    5YIX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            (R,R)-2,3-BUTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5YIX 
_cell.length_a            65.199 
_cell.length_b            65.199 
_cell.length_c            397.934 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YIX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 35 B CYS 118 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc2 B SG CYS 50 B CYS 133 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc3 B SG CYS 60 B CYS 143 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc4 B ND1 HIS 63 B HIS 146 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (R,R)-2,3-BUTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C3 BU3 sing 70 n n 
O6 HO6 BU3 sing 71 n n 
C3 C4 BU3 sing 72 n n 
C3 C2 BU3 sing 73 n n 
C3 H3 BU3 sing 74 n n 
C4 H41 BU3 sing 75 n n 
C4 H42 BU3 sing 76 n n 
C4 H43 BU3 sing 77 n n 
C2 O5 BU3 sing 78 n n 
C2 C1 BU3 sing 79 n n 
C2 H2 BU3 sing 80 n n 
O5 HO5 BU3 sing 81 n n 
C1 H11 BU3 sing 82 n n 
C1 H12 BU3 sing 83 n n 
C1 H13 BU3 sing 84 n n 
#
_atom_sites.entry_id                     5YIX 
_atom_sites.fract_transf_matrix[1][1]    0.015338 
_atom_sites.fract_transf_matrix[1][2]    0.008855 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01771 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BU3 A 1 501 1003 BU3 BU3 . 
D 3 BU3 B 1 201 1002 BU3 BU3 . 
E 4 ZN B 1 202 1001 ZN ZN . 
F 5 HOH A 1 601 175 HOH HOH . 
F 5 HOH A 2 602 151 HOH HOH . 
F 5 HOH A 3 603 161 HOH HOH . 
F 5 HOH A 4 604 98 HOH HOH . 
F 5 HOH A 5 605 116 HOH HOH . 
F 5 HOH A 6 606 155 HOH HOH . 
F 5 HOH A 7 607 158 HOH HOH . 
F 5 HOH A 8 608 40 HOH HOH . 
F 5 HOH A 9 609 94 HOH HOH . 
F 5 HOH A 10 610 153 HOH HOH . 
F 5 HOH A 11 611 58 HOH HOH . 
F 5 HOH A 12 612 157 HOH HOH . 
F 5 HOH A 13 613 138 HOH HOH . 
F 5 HOH A 14 614 123 HOH HOH . 
F 5 HOH A 15 615 121 HOH HOH . 
F 5 HOH A 16 616 24 HOH HOH . 
F 5 HOH A 17 617 111 HOH HOH . 
F 5 HOH A 18 618 95 HOH HOH . 
F 5 HOH A 19 619 164 HOH HOH . 
F 5 HOH A 20 620 101 HOH HOH . 
F 5 HOH A 21 621 107 HOH HOH . 
F 5 HOH A 22 622 21 HOH HOH . 
F 5 HOH A 23 623 70 HOH HOH . 
F 5 HOH A 24 624 117 HOH HOH . 
F 5 HOH A 25 625 14 HOH HOH . 
F 5 HOH A 26 626 37 HOH HOH . 
F 5 HOH A 27 627 53 HOH HOH . 
F 5 HOH A 28 628 126 HOH HOH . 
F 5 HOH A 29 629 79 HOH HOH . 
F 5 HOH A 30 630 102 HOH HOH . 
F 5 HOH A 31 631 29 HOH HOH . 
F 5 HOH A 32 632 88 HOH HOH . 
F 5 HOH A 33 633 17 HOH HOH . 
F 5 HOH A 34 634 59 HOH HOH . 
F 5 HOH A 35 635 50 HOH HOH . 
F 5 HOH A 36 636 3 HOH HOH . 
F 5 HOH A 37 637 9 HOH HOH . 
F 5 HOH A 38 638 13 HOH HOH . 
F 5 HOH A 39 639 41 HOH HOH . 
F 5 HOH A 40 640 130 HOH HOH . 
F 5 HOH A 41 641 36 HOH HOH . 
F 5 HOH A 42 642 7 HOH HOH . 
F 5 HOH A 43 643 23 HOH HOH . 
F 5 HOH A 44 644 122 HOH HOH . 
F 5 HOH A 45 645 66 HOH HOH . 
F 5 HOH A 46 646 31 HOH HOH . 
F 5 HOH A 47 647 65 HOH HOH . 
F 5 HOH A 48 648 42 HOH HOH . 
F 5 HOH A 49 649 131 HOH HOH . 
F 5 HOH A 50 650 133 HOH HOH . 
F 5 HOH A 51 651 177 HOH HOH . 
F 5 HOH A 52 652 28 HOH HOH . 
F 5 HOH A 53 653 35 HOH HOH . 
F 5 HOH A 54 654 1 HOH HOH . 
F 5 HOH A 55 655 6 HOH HOH . 
F 5 HOH A 56 656 89 HOH HOH . 
F 5 HOH A 57 657 49 HOH HOH . 
F 5 HOH A 58 658 72 HOH HOH . 
F 5 HOH A 59 659 54 HOH HOH . 
F 5 HOH A 60 660 11 HOH HOH . 
F 5 HOH A 61 661 171 HOH HOH . 
F 5 HOH A 62 662 110 HOH HOH . 
F 5 HOH A 63 663 93 HOH HOH . 
F 5 HOH A 64 664 38 HOH HOH . 
F 5 HOH A 65 665 83 HOH HOH . 
F 5 HOH A 66 666 71 HOH HOH . 
F 5 HOH A 67 667 115 HOH HOH . 
F 5 HOH A 68 668 16 HOH HOH . 
F 5 HOH A 69 669 75 HOH HOH . 
F 5 HOH A 70 670 62 HOH HOH . 
F 5 HOH A 71 671 12 HOH HOH . 
F 5 HOH A 72 672 137 HOH HOH . 
F 5 HOH A 73 673 118 HOH HOH . 
F 5 HOH A 74 674 86 HOH HOH . 
F 5 HOH A 75 675 25 HOH HOH . 
F 5 HOH A 76 676 33 HOH HOH . 
F 5 HOH A 77 677 82 HOH HOH . 
F 5 HOH A 78 678 166 HOH HOH . 
F 5 HOH A 79 679 90 HOH HOH . 
F 5 HOH A 80 680 20 HOH HOH . 
F 5 HOH A 81 681 18 HOH HOH . 
F 5 HOH A 82 682 156 HOH HOH . 
F 5 HOH A 83 683 112 HOH HOH . 
F 5 HOH A 84 684 10 HOH HOH . 
F 5 HOH A 85 685 19 HOH HOH . 
F 5 HOH A 86 686 43 HOH HOH . 
F 5 HOH A 87 687 78 HOH HOH . 
F 5 HOH A 88 688 8 HOH HOH . 
F 5 HOH A 89 689 52 HOH HOH . 
F 5 HOH A 90 690 51 HOH HOH . 
F 5 HOH A 91 691 47 HOH HOH . 
F 5 HOH A 92 692 140 HOH HOH . 
F 5 HOH A 93 693 56 HOH HOH . 
F 5 HOH A 94 694 74 HOH HOH . 
F 5 HOH A 95 695 73 HOH HOH . 
F 5 HOH A 96 696 30 HOH HOH . 
F 5 HOH A 97 697 132 HOH HOH . 
F 5 HOH A 98 698 84 HOH HOH . 
F 5 HOH A 99 699 127 HOH HOH . 
F 5 HOH A 100 700 81 HOH HOH . 
F 5 HOH A 101 701 69 HOH HOH . 
F 5 HOH A 102 702 124 HOH HOH . 
F 5 HOH A 103 703 154 HOH HOH . 
F 5 HOH A 104 704 57 HOH HOH . 
F 5 HOH A 105 705 68 HOH HOH . 
F 5 HOH A 106 706 172 HOH HOH . 
F 5 HOH A 107 707 108 HOH HOH . 
F 5 HOH A 108 708 141 HOH HOH . 
F 5 HOH A 109 709 91 HOH HOH . 
F 5 HOH A 110 710 44 HOH HOH . 
F 5 HOH A 111 711 4 HOH HOH . 
F 5 HOH A 112 712 39 HOH HOH . 
F 5 HOH A 113 713 105 HOH HOH . 
F 5 HOH A 114 714 92 HOH HOH . 
F 5 HOH A 115 715 149 HOH HOH . 
F 5 HOH A 116 716 163 HOH HOH . 
F 5 HOH A 117 717 26 HOH HOH . 
F 5 HOH A 118 718 170 HOH HOH . 
F 5 HOH A 119 719 129 HOH HOH . 
F 5 HOH A 120 720 113 HOH HOH . 
F 5 HOH A 121 721 114 HOH HOH . 
F 5 HOH A 122 722 77 HOH HOH . 
F 5 HOH A 123 723 48 HOH HOH . 
F 5 HOH A 124 724 125 HOH HOH . 
F 5 HOH A 125 725 174 HOH HOH . 
F 5 HOH A 126 726 173 HOH HOH . 
F 5 HOH A 127 727 45 HOH HOH . 
F 5 HOH A 128 728 139 HOH HOH . 
F 5 HOH A 129 729 61 HOH HOH . 
F 5 HOH A 130 730 96 HOH HOH . 
F 5 HOH A 131 731 76 HOH HOH . 
F 5 HOH A 132 732 128 HOH HOH . 
F 5 HOH A 133 733 134 HOH HOH . 
F 5 HOH A 134 734 182 HOH HOH . 
F 5 HOH A 135 735 179 HOH HOH . 
F 5 HOH A 136 736 180 HOH HOH . 
F 5 HOH A 137 737 146 HOH HOH . 
F 5 HOH A 138 738 60 HOH HOH . 
F 5 HOH A 139 739 165 HOH HOH . 
F 5 HOH A 140 740 162 HOH HOH . 
F 5 HOH A 141 741 103 HOH HOH . 
F 5 HOH A 142 742 97 HOH HOH . 
F 5 HOH A 143 743 55 HOH HOH . 
F 5 HOH A 144 744 143 HOH HOH . 
F 5 HOH A 145 745 152 HOH HOH . 
F 5 HOH A 146 746 135 HOH HOH . 
F 5 HOH A 147 747 145 HOH HOH . 
F 5 HOH A 148 748 159 HOH HOH . 
F 5 HOH A 149 749 63 HOH HOH . 
F 5 HOH A 150 750 80 HOH HOH . 
F 5 HOH A 151 751 178 HOH HOH . 
F 5 HOH A 152 752 147 HOH HOH . 
F 5 HOH A 153 753 106 HOH HOH . 
F 5 HOH A 154 754 144 HOH HOH . 
F 5 HOH A 155 755 181 HOH HOH . 
G 5 HOH B 1 301 169 HOH HOH . 
G 5 HOH B 2 302 150 HOH HOH . 
G 5 HOH B 3 303 167 HOH HOH . 
G 5 HOH B 4 304 64 HOH HOH . 
G 5 HOH B 5 305 67 HOH HOH . 
G 5 HOH B 6 306 100 HOH HOH . 
G 5 HOH B 7 307 99 HOH HOH . 
G 5 HOH B 8 308 87 HOH HOH . 
G 5 HOH B 9 309 32 HOH HOH . 
G 5 HOH B 10 310 5 HOH HOH . 
G 5 HOH B 11 311 2 HOH HOH . 
G 5 HOH B 12 312 34 HOH HOH . 
G 5 HOH B 13 313 104 HOH HOH . 
G 5 HOH B 14 314 22 HOH HOH . 
G 5 HOH B 15 315 46 HOH HOH . 
G 5 HOH B 16 316 15 HOH HOH . 
G 5 HOH B 17 317 136 HOH HOH . 
G 5 HOH B 18 318 27 HOH HOH . 
G 5 HOH B 19 319 85 HOH HOH . 
G 5 HOH B 20 320 120 HOH HOH . 
G 5 HOH B 21 321 148 HOH HOH . 
G 5 HOH B 22 322 109 HOH HOH . 
G 5 HOH B 23 323 119 HOH HOH . 
G 5 HOH B 24 324 168 HOH HOH . 
G 5 HOH B 25 325 142 HOH HOH . 
G 5 HOH B 26 326 176 HOH HOH . 
G 5 HOH B 27 327 160 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 BU3 . . . C 3 22.779 46.104 176.108 1 57.99 ? O6 BU3 501 A 1 
HETATM 2 C C3 BU3 . . . C 3 22.032 47.204 176.59 1 59.63 ? C3 BU3 501 A 1 
HETATM 3 C C4 BU3 . . . C 3 22.643 47.71 177.882 1 57.61 ? C4 BU3 501 A 1 
HETATM 4 C C2 BU3 . . . C 3 20.583 46.795 176.798 1 55.73 ? C2 BU3 501 A 1 
HETATM 5 O O5 BU3 . . . C 3 19.922 46.727 175.551 1 60.33 ? O5 BU3 501 A 1 
HETATM 6 C C1 BU3 . . . C 3 19.87 47.786 177.695 1 52.67 ? C1 BU3 501 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           212 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#