data_5YJ9 # _model_server_result.job_id gtwKke71NwFHChEeSjGeRw _model_server_result.datetime_utc '2024-11-25 10:25:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yj9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 5YJ9 # _exptl.entry_id 5YJ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.82 _cell.angle_gamma 90 _cell.entry_id 5YJ9 _cell.length_a 138.028 _cell.length_b 59.79 _cell.length_c 50.822 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YJ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 369 D CYS 516 1_555 A SG CYS 401 D CYS 548 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C LYS 49 D LYS 196 1_555 A N MSE 50 D MSE 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 50 D MSE 197 1_555 A N MSE 51 D MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C MSE 51 D MSE 198 1_555 A N PHE 52 D PHE 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C SER 60 D SER 207 1_555 A N MSE 61 D MSE 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 61 D MSE 208 1_555 A N GLU 62 D GLU 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C ALA 66 D ALA 213 1_555 A N MSE 67 D MSE 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C MSE 67 D MSE 214 1_555 A N TYR 68 D TYR 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C ARG 75 D ARG 222 1_555 A N MSE 76 D MSE 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C MSE 76 D MSE 223 1_555 A N TYR 77 D TYR 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 141 D MSE 288 1_555 A N SER 142 D SER 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C LEU 146 D LEU 293 1_555 A N MSE 147 D MSE 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 147 D MSE 294 1_555 A N LYS 148 D LYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale13 A C HIS 180 D HIS 327 1_555 A N MSE 181 D MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C MSE 181 D MSE 328 1_555 A N THR 182 D THR 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 A C GLU 232 D GLU 379 1_555 A N MSE 233 D MSE 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale16 A C MSE 233 D MSE 380 1_555 A N ASP 234 D ASP 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 A C LEU 241 D LEU 388 1_555 A N MSE 242 D MSE 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale18 A C MSE 242 D MSE 389 1_555 A N ALA 243 D ALA 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OE2 GLU 70 D GLU 217 1_555 C MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc2 A OD1 ASN 195 D ASN 342 1_555 D MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc3 A OD1 ASP 212 D ASP 359 1_555 C MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc4 A OD2 ASP 212 D ASP 359 1_555 C MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc5 A OD2 ASP 212 D ASP 359 1_555 D MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc6 B O2B ANP . D ANP 601 1_555 C MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc7 B O1G ANP . D ANP 601 1_555 D MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc8 B O1A ANP . D ANP 601 1_555 D MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc9 C MG MG . D MG 602 1_555 E O HOH . D HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc10 D MG MG . D MG 603 1_555 E O HOH . D HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc11 D MG MG . D MG 603 1_555 E O HOH . D HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YJ9 _atom_sites.fract_transf_matrix[1][1] 0.007245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001516 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP D 1 601 401 ANP ANP . C 3 MG D 1 602 1 MG MG . D 3 MG D 1 603 2 MG MG . E 4 HOH D 1 701 2 HOH HOH . E 4 HOH D 2 702 1 HOH HOH . E 4 HOH D 3 703 3 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 40.502 _atom_site.Cartn_y 55.677 _atom_site.Cartn_z 12.182 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 603 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #