data_5YJH # _model_server_result.job_id ymXNLcFgl9t9QrdHrYIocA _model_server_result.datetime_utc '2025-07-31 02:33:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yjh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 5YJH # _exptl.entry_id 5YJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5YJH _cell.length_a 105.529 _cell.length_b 105.529 _cell.length_c 330.342 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 330.342 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 44 1_555 A SG CYS 66 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 55 A CYS 69 1_555 A SG CYS 319 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf3 A SG CYS 65 A CYS 79 1_555 A SG CYS 78 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 194 A CYS 208 1_555 A SG CYS 297 A CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 A SG CYS 453 A CYS 467 1_555 A SG CYS 458 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OG1 THR 90 A THR 104 1_555 U MG MG . A MG 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc2 A O PRO 123 A PRO 137 1_555 W MG MG . A MG 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc3 A OD1 ASN 183 A ASN 197 1_555 CA MG MG . A MG 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc4 A OG1 THR 191 A THR 205 1_555 CA MG MG . A MG 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc5 A O CYS 194 A CYS 208 1_555 AA MG MG . A MG 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc6 A O ILE 203 A ILE 217 1_555 U MG MG . A MG 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc7 A O PRO 260 A PRO 274 1_555 X MG MG . A MG 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc8 A OD2 ASP 336 A ASP 350 1_555 AA MG MG . A MG 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc9 A O GLN 366 A GLN 380 1_555 Y MG MG . A MG 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc10 A O PRO 394 A PRO 408 1_555 Y MG MG . A MG 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc11 A OD1 ASN 396 A ASN 410 1_555 Y MG MG . A MG 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc12 A O GLY 515 A GLY 529 1_555 V MG MG . A MG 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc13 A OD1 ASN 524 A ASN 538 1_555 Z MG MG . A MG 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc14 A OE1 GLU 583 A GLU 597 1_555 BA MG MG . A MG 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc15 A OG SER 598 A SER 612 1_555 BA MG MG . A MG 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc16 A OD2 ASP 599 A ASP 613 1_555 BA MG MG . A MG 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc17 B NA NA . A NA 701 1_555 HA O HOH . A HOH 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc18 B NA NA . A NA 701 1_555 HA O HOH . A HOH 823 8_556 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc19 B NA NA . A NA 701 1_555 HA O HOH . A HOH 839 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc20 DA CA CA . A CA 729 1_555 HA O HOH . A HOH 929 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc21 DA CA CA . A CA 729 1_555 HA O HOH . A HOH 949 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc22 EA CA CA . A CA 730 1_555 HA O HOH . A HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YJH _atom_sites.fract_transf_matrix[1][1] 0.009476 _atom_sites.fract_transf_matrix[1][2] 0.005471 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 701 965 NA NA . C 3 CL A 1 702 966 CL CL . D 3 CL A 1 703 967 CL CL . E 3 CL A 1 704 968 CL CL . F 3 CL A 1 705 969 CL CL . G 3 CL A 1 706 970 CL CL . H 3 CL A 1 707 971 CL CL . I 3 CL A 1 708 972 CL CL . J 3 CL A 1 709 973 CL CL . K 3 CL A 1 710 974 CL CL . L 3 CL A 1 711 975 CL CL . M 3 CL A 1 712 976 CL CL . N 3 CL A 1 713 977 CL CL . O 3 CL A 1 714 978 CL CL . P 3 CL A 1 715 979 CL CL . Q 3 CL A 1 716 980 CL CL . R 3 CL A 1 717 981 CL CL . S 3 CL A 1 718 982 CL CL . T 3 CL A 1 719 983 CL CL . U 4 MG A 1 720 984 MG MG . V 4 MG A 1 721 985 MG MG . W 4 MG A 1 722 986 MG MG . X 4 MG A 1 723 987 MG MG . Y 4 MG A 1 724 988 MG MG . Z 4 MG A 1 725 989 MG MG . AA 4 MG A 1 726 990 MG MG . BA 4 MG A 1 727 991 MG MG . CA 4 MG A 1 728 992 MG MG . DA 5 CA A 1 729 993 CA CA . EA 5 CA A 1 730 994 CA CA . FA 5 CA A 1 731 995 CA CA . GA 6 ZN A 1 732 996 ZN ZN . HA 7 HOH A 1 801 905 HOH HOH . HA 7 HOH A 2 802 940 HOH HOH . HA 7 HOH A 3 803 845 HOH HOH . HA 7 HOH A 4 804 948 HOH HOH . HA 7 HOH A 5 805 900 HOH HOH . HA 7 HOH A 6 806 890 HOH HOH . HA 7 HOH A 7 807 933 HOH HOH . HA 7 HOH A 8 808 806 HOH HOH . HA 7 HOH A 9 809 961 HOH HOH . HA 7 HOH A 10 810 931 HOH HOH . HA 7 HOH A 11 811 964 HOH HOH . HA 7 HOH A 12 812 932 HOH HOH . HA 7 HOH A 13 813 896 HOH HOH . HA 7 HOH A 14 814 838 HOH HOH . HA 7 HOH A 15 815 904 HOH HOH . HA 7 HOH A 16 816 857 HOH HOH . HA 7 HOH A 17 817 892 HOH HOH . HA 7 HOH A 18 818 936 HOH HOH . HA 7 HOH A 19 819 898 HOH HOH . HA 7 HOH A 20 820 899 HOH HOH . HA 7 HOH A 21 821 862 HOH HOH . HA 7 HOH A 22 822 928 HOH HOH . HA 7 HOH A 23 823 937 HOH HOH . HA 7 HOH A 24 824 952 HOH HOH . HA 7 HOH A 25 825 809 HOH HOH . HA 7 HOH A 26 826 880 HOH HOH . HA 7 HOH A 27 827 939 HOH HOH . HA 7 HOH A 28 828 833 HOH HOH . HA 7 HOH A 29 829 894 HOH HOH . HA 7 HOH A 30 830 945 HOH HOH . HA 7 HOH A 31 831 881 HOH HOH . HA 7 HOH A 32 832 841 HOH HOH . HA 7 HOH A 33 833 807 HOH HOH . HA 7 HOH A 34 834 864 HOH HOH . HA 7 HOH A 35 835 831 HOH HOH . HA 7 HOH A 36 836 801 HOH HOH . HA 7 HOH A 37 837 854 HOH HOH . HA 7 HOH A 38 838 868 HOH HOH . HA 7 HOH A 39 839 955 HOH HOH . HA 7 HOH A 40 840 875 HOH HOH . HA 7 HOH A 41 841 885 HOH HOH . HA 7 HOH A 42 842 891 HOH HOH . HA 7 HOH A 43 843 888 HOH HOH . HA 7 HOH A 44 844 895 HOH HOH . HA 7 HOH A 45 845 887 HOH HOH . HA 7 HOH A 46 846 958 HOH HOH . HA 7 HOH A 47 847 963 HOH HOH . HA 7 HOH A 48 848 877 HOH HOH . HA 7 HOH A 49 849 901 HOH HOH . HA 7 HOH A 50 850 938 HOH HOH . HA 7 HOH A 51 851 909 HOH HOH . HA 7 HOH A 52 852 810 HOH HOH . HA 7 HOH A 53 853 935 HOH HOH . HA 7 HOH A 54 854 814 HOH HOH . HA 7 HOH A 55 855 866 HOH HOH . HA 7 HOH A 56 856 903 HOH HOH . HA 7 HOH A 57 857 805 HOH HOH . HA 7 HOH A 58 858 856 HOH HOH . HA 7 HOH A 59 859 916 HOH HOH . HA 7 HOH A 60 860 847 HOH HOH . HA 7 HOH A 61 861 886 HOH HOH . HA 7 HOH A 62 862 889 HOH HOH . HA 7 HOH A 63 863 804 HOH HOH . HA 7 HOH A 64 864 951 HOH HOH . HA 7 HOH A 65 865 957 HOH HOH . HA 7 HOH A 66 866 879 HOH HOH . HA 7 HOH A 67 867 836 HOH HOH . HA 7 HOH A 68 868 846 HOH HOH . HA 7 HOH A 69 869 883 HOH HOH . HA 7 HOH A 70 870 842 HOH HOH . HA 7 HOH A 71 871 813 HOH HOH . HA 7 HOH A 72 872 882 HOH HOH . HA 7 HOH A 73 873 910 HOH HOH . HA 7 HOH A 74 874 850 HOH HOH . HA 7 HOH A 75 875 930 HOH HOH . HA 7 HOH A 76 876 818 HOH HOH . HA 7 HOH A 77 877 828 HOH HOH . HA 7 HOH A 78 878 840 HOH HOH . HA 7 HOH A 79 879 911 HOH HOH . HA 7 HOH A 80 880 802 HOH HOH . HA 7 HOH A 81 881 829 HOH HOH . HA 7 HOH A 82 882 820 HOH HOH . HA 7 HOH A 83 883 884 HOH HOH . HA 7 HOH A 84 884 837 HOH HOH . HA 7 HOH A 85 885 834 HOH HOH . HA 7 HOH A 86 886 944 HOH HOH . HA 7 HOH A 87 887 870 HOH HOH . HA 7 HOH A 88 888 925 HOH HOH . HA 7 HOH A 89 889 874 HOH HOH . HA 7 HOH A 90 890 855 HOH HOH . HA 7 HOH A 91 891 897 HOH HOH . HA 7 HOH A 92 892 803 HOH HOH . HA 7 HOH A 93 893 824 HOH HOH . HA 7 HOH A 94 894 827 HOH HOH . HA 7 HOH A 95 895 851 HOH HOH . HA 7 HOH A 96 896 902 HOH HOH . HA 7 HOH A 97 897 943 HOH HOH . HA 7 HOH A 98 898 867 HOH HOH . HA 7 HOH A 99 899 817 HOH HOH . HA 7 HOH A 100 900 830 HOH HOH . HA 7 HOH A 101 901 962 HOH HOH . HA 7 HOH A 102 902 858 HOH HOH . HA 7 HOH A 103 903 878 HOH HOH . HA 7 HOH A 104 904 822 HOH HOH . HA 7 HOH A 105 905 876 HOH HOH . HA 7 HOH A 106 906 953 HOH HOH . HA 7 HOH A 107 907 821 HOH HOH . HA 7 HOH A 108 908 918 HOH HOH . HA 7 HOH A 109 909 812 HOH HOH . HA 7 HOH A 110 910 816 HOH HOH . HA 7 HOH A 111 911 907 HOH HOH . HA 7 HOH A 112 912 869 HOH HOH . HA 7 HOH A 113 913 843 HOH HOH . HA 7 HOH A 114 914 811 HOH HOH . HA 7 HOH A 115 915 860 HOH HOH . HA 7 HOH A 116 916 922 HOH HOH . HA 7 HOH A 117 917 819 HOH HOH . HA 7 HOH A 118 918 929 HOH HOH . HA 7 HOH A 119 919 861 HOH HOH . HA 7 HOH A 120 920 960 HOH HOH . HA 7 HOH A 121 921 954 HOH HOH . HA 7 HOH A 122 922 865 HOH HOH . HA 7 HOH A 123 923 912 HOH HOH . HA 7 HOH A 124 924 852 HOH HOH . HA 7 HOH A 125 925 844 HOH HOH . HA 7 HOH A 126 926 959 HOH HOH . HA 7 HOH A 127 927 956 HOH HOH . HA 7 HOH A 128 928 934 HOH HOH . HA 7 HOH A 129 929 924 HOH HOH . HA 7 HOH A 130 930 853 HOH HOH . HA 7 HOH A 131 931 848 HOH HOH . HA 7 HOH A 132 932 920 HOH HOH . HA 7 HOH A 133 933 808 HOH HOH . HA 7 HOH A 134 934 872 HOH HOH . HA 7 HOH A 135 935 825 HOH HOH . HA 7 HOH A 136 936 913 HOH HOH . HA 7 HOH A 137 937 941 HOH HOH . HA 7 HOH A 138 938 863 HOH HOH . HA 7 HOH A 139 939 815 HOH HOH . HA 7 HOH A 140 940 947 HOH HOH . HA 7 HOH A 141 941 908 HOH HOH . HA 7 HOH A 142 942 949 HOH HOH . HA 7 HOH A 143 943 873 HOH HOH . HA 7 HOH A 144 944 906 HOH HOH . HA 7 HOH A 145 945 919 HOH HOH . HA 7 HOH A 146 946 921 HOH HOH . HA 7 HOH A 147 947 914 HOH HOH . HA 7 HOH A 148 948 915 HOH HOH . HA 7 HOH A 149 949 923 HOH HOH . HA 7 HOH A 150 950 946 HOH HOH . HA 7 HOH A 151 951 826 HOH HOH . HA 7 HOH A 152 952 927 HOH HOH . HA 7 HOH A 153 953 917 HOH HOH . HA 7 HOH A 154 954 950 HOH HOH . HA 7 HOH A 155 955 839 HOH HOH . HA 7 HOH A 156 956 871 HOH HOH . HA 7 HOH A 157 957 926 HOH HOH . HA 7 HOH A 158 958 942 HOH HOH . HA 7 HOH A 159 959 859 HOH HOH . HA 7 HOH A 160 960 835 HOH HOH . HA 7 HOH A 161 961 893 HOH HOH . HA 7 HOH A 162 962 832 HOH HOH . HA 7 HOH A 163 963 823 HOH HOH . HA 7 HOH A 164 964 849 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.972 _atom_site.Cartn_y 16.63 _atom_site.Cartn_z 154.968 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 93.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #