data_5YJI
#
_model_server_result.job_id            aPyPhJheU6FcQAkAzTBVeQ 
_model_server_result.datetime_utc      '2024-11-15 09:32:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yji 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5YJI 
#
_exptl.entry_id    5YJI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              168.193 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-methoxy-1-methyl-2H-pyridine-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YJI 
_cell.length_a            47.356 
_cell.length_b            71.622 
_cell.length_c            157.408 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YJI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C8 H12 N2 O2' 
_chem_comp.formula_weight    168.193 
_chem_comp.id                8WO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-methoxy-1-methyl-2H-pyridine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 N1 8WO sing 1 n n 
N1 C2 8WO sing 2 n n 
N1 C1 8WO sing 3 n n 
C2 C3 8WO sing 4 n n 
N2 C6 8WO sing 5 n n 
O2 C1 8WO sing 6 n n 
O2 C7 8WO sing 7 n n 
C1 C5 8WO doub 8 n n 
C3 C6 8WO sing 9 n n 
C3 C4 8WO doub 10 n n 
C6 O1 8WO doub 11 n n 
C5 C4 8WO sing 12 n n 
C4 H1 8WO sing 13 n n 
C5 H2 8WO sing 14 n n 
C2 H3 8WO sing 15 n n 
C8 H4 8WO sing 16 n n 
C8 H5 8WO sing 17 n n 
C8 H6 8WO sing 18 n n 
C7 H7 8WO sing 19 n n 
C7 H8 8WO sing 20 n n 
C7 H9 8WO sing 21 n n 
N2 H10 8WO sing 22 n n 
N2 H11 8WO sing 23 n n 
C2 H12 8WO sing 24 n n 
#
_atom_sites.entry_id                     5YJI 
_atom_sites.fract_transf_matrix[1][1]    0.021117 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013962 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006353 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 301 301 SAH SAH . 
D 3 8WO A 1 302 302 8WO UNL . 
E 2 SAH B 1 301 301 SAH SAH . 
F 3 8WO B 1 302 302 8WO UNL . 
G 4 HOH A 1 401 6 HOH HOH . 
G 4 HOH A 2 402 16 HOH HOH . 
G 4 HOH A 3 403 203 HOH HOH . 
G 4 HOH A 4 404 58 HOH HOH . 
G 4 HOH A 5 405 26 HOH HOH . 
G 4 HOH A 6 406 107 HOH HOH . 
G 4 HOH A 7 407 184 HOH HOH . 
G 4 HOH A 8 408 202 HOH HOH . 
G 4 HOH A 9 409 46 HOH HOH . 
G 4 HOH A 10 410 133 HOH HOH . 
G 4 HOH A 11 411 5 HOH HOH . 
G 4 HOH A 12 412 22 HOH HOH . 
G 4 HOH A 13 413 1 HOH HOH . 
G 4 HOH A 14 414 196 HOH HOH . 
G 4 HOH A 15 415 55 HOH HOH . 
G 4 HOH A 16 416 44 HOH HOH . 
G 4 HOH A 17 417 62 HOH HOH . 
G 4 HOH A 18 418 183 HOH HOH . 
G 4 HOH A 19 419 39 HOH HOH . 
G 4 HOH A 20 420 181 HOH HOH . 
G 4 HOH A 21 421 131 HOH HOH . 
G 4 HOH A 22 422 189 HOH HOH . 
G 4 HOH A 23 423 63 HOH HOH . 
G 4 HOH A 24 424 10 HOH HOH . 
G 4 HOH A 25 425 53 HOH HOH . 
G 4 HOH A 26 426 195 HOH HOH . 
G 4 HOH A 27 427 8 HOH HOH . 
G 4 HOH A 28 428 38 HOH HOH . 
G 4 HOH A 29 429 115 HOH HOH . 
G 4 HOH A 30 430 185 HOH HOH . 
G 4 HOH A 31 431 49 HOH HOH . 
G 4 HOH A 32 432 73 HOH HOH . 
G 4 HOH A 33 433 204 HOH HOH . 
G 4 HOH A 34 434 48 HOH HOH . 
G 4 HOH A 35 435 177 HOH HOH . 
G 4 HOH A 36 436 166 HOH HOH . 
G 4 HOH A 37 437 122 HOH HOH . 
G 4 HOH A 38 438 33 HOH HOH . 
G 4 HOH A 39 439 7 HOH HOH . 
G 4 HOH A 40 440 64 HOH HOH . 
G 4 HOH A 41 441 197 HOH HOH . 
G 4 HOH A 42 442 207 HOH HOH . 
G 4 HOH A 43 443 34 HOH HOH . 
G 4 HOH A 44 444 71 HOH HOH . 
G 4 HOH A 45 445 9 HOH HOH . 
G 4 HOH A 46 446 18 HOH HOH . 
G 4 HOH A 47 447 51 HOH HOH . 
G 4 HOH A 48 448 35 HOH HOH . 
G 4 HOH A 49 449 128 HOH HOH . 
G 4 HOH A 50 450 21 HOH HOH . 
G 4 HOH A 51 451 20 HOH HOH . 
G 4 HOH A 52 452 132 HOH HOH . 
G 4 HOH A 53 453 70 HOH HOH . 
G 4 HOH A 54 454 188 HOH HOH . 
G 4 HOH A 55 455 57 HOH HOH . 
G 4 HOH A 56 456 11 HOH HOH . 
G 4 HOH A 57 457 56 HOH HOH . 
G 4 HOH A 58 458 192 HOH HOH . 
G 4 HOH A 59 459 50 HOH HOH . 
G 4 HOH A 60 460 126 HOH HOH . 
G 4 HOH A 61 461 60 HOH HOH . 
G 4 HOH A 62 462 13 HOH HOH . 
G 4 HOH A 63 463 37 HOH HOH . 
G 4 HOH A 64 464 113 HOH HOH . 
G 4 HOH A 65 465 41 HOH HOH . 
G 4 HOH A 66 466 141 HOH HOH . 
G 4 HOH A 67 467 200 HOH HOH . 
G 4 HOH A 68 468 36 HOH HOH . 
G 4 HOH A 69 469 175 HOH HOH . 
G 4 HOH A 70 470 25 HOH HOH . 
G 4 HOH A 71 471 15 HOH HOH . 
G 4 HOH A 72 472 187 HOH HOH . 
G 4 HOH A 73 473 127 HOH HOH . 
G 4 HOH A 74 474 24 HOH HOH . 
G 4 HOH A 75 475 30 HOH HOH . 
G 4 HOH A 76 476 170 HOH HOH . 
G 4 HOH A 77 477 40 HOH HOH . 
G 4 HOH A 78 478 110 HOH HOH . 
G 4 HOH A 79 479 14 HOH HOH . 
G 4 HOH A 80 480 54 HOH HOH . 
G 4 HOH A 81 481 28 HOH HOH . 
G 4 HOH A 82 482 106 HOH HOH . 
G 4 HOH A 83 483 29 HOH HOH . 
G 4 HOH A 84 484 120 HOH HOH . 
G 4 HOH A 85 485 4 HOH HOH . 
G 4 HOH A 86 486 125 HOH HOH . 
G 4 HOH A 87 487 114 HOH HOH . 
G 4 HOH A 88 488 186 HOH HOH . 
G 4 HOH A 89 489 17 HOH HOH . 
G 4 HOH A 90 490 117 HOH HOH . 
G 4 HOH A 91 491 3 HOH HOH . 
G 4 HOH A 92 492 42 HOH HOH . 
G 4 HOH A 93 493 137 HOH HOH . 
G 4 HOH A 94 494 47 HOH HOH . 
G 4 HOH A 95 495 118 HOH HOH . 
G 4 HOH A 96 496 108 HOH HOH . 
G 4 HOH A 97 497 65 HOH HOH . 
G 4 HOH A 98 498 180 HOH HOH . 
G 4 HOH A 99 499 130 HOH HOH . 
G 4 HOH A 100 500 123 HOH HOH . 
G 4 HOH A 101 501 134 HOH HOH . 
G 4 HOH A 102 502 23 HOH HOH . 
G 4 HOH A 103 503 124 HOH HOH . 
G 4 HOH A 104 504 172 HOH HOH . 
G 4 HOH A 105 505 32 HOH HOH . 
G 4 HOH A 106 506 109 HOH HOH . 
G 4 HOH A 107 507 12 HOH HOH . 
G 4 HOH A 108 508 52 HOH HOH . 
G 4 HOH A 109 509 179 HOH HOH . 
G 4 HOH A 110 510 112 HOH HOH . 
G 4 HOH A 111 511 111 HOH HOH . 
G 4 HOH A 112 512 138 HOH HOH . 
G 4 HOH A 113 513 19 HOH HOH . 
G 4 HOH A 114 514 205 HOH HOH . 
G 4 HOH A 115 515 61 HOH HOH . 
G 4 HOH A 116 516 129 HOH HOH . 
G 4 HOH A 117 517 210 HOH HOH . 
G 4 HOH A 118 518 206 HOH HOH . 
G 4 HOH A 119 519 27 HOH HOH . 
G 4 HOH A 120 520 2 HOH HOH . 
G 4 HOH A 121 521 142 HOH HOH . 
G 4 HOH A 122 522 116 HOH HOH . 
G 4 HOH A 123 523 169 HOH HOH . 
G 4 HOH A 124 524 119 HOH HOH . 
G 4 HOH A 125 525 59 HOH HOH . 
G 4 HOH A 126 526 135 HOH HOH . 
G 4 HOH A 127 527 45 HOH HOH . 
G 4 HOH A 128 528 176 HOH HOH . 
G 4 HOH A 129 529 31 HOH HOH . 
G 4 HOH A 130 530 43 HOH HOH . 
G 4 HOH A 131 531 193 HOH HOH . 
H 4 HOH B 1 401 208 HOH HOH . 
H 4 HOH B 2 402 96 HOH HOH . 
H 4 HOH B 3 403 152 HOH HOH . 
H 4 HOH B 4 404 146 HOH HOH . 
H 4 HOH B 5 405 147 HOH HOH . 
H 4 HOH B 6 406 88 HOH HOH . 
H 4 HOH B 7 407 209 HOH HOH . 
H 4 HOH B 8 408 158 HOH HOH . 
H 4 HOH B 9 409 190 HOH HOH . 
H 4 HOH B 10 410 155 HOH HOH . 
H 4 HOH B 11 411 182 HOH HOH . 
H 4 HOH B 12 412 105 HOH HOH . 
H 4 HOH B 13 413 69 HOH HOH . 
H 4 HOH B 14 414 87 HOH HOH . 
H 4 HOH B 15 415 103 HOH HOH . 
H 4 HOH B 16 416 191 HOH HOH . 
H 4 HOH B 17 417 167 HOH HOH . 
H 4 HOH B 18 418 198 HOH HOH . 
H 4 HOH B 19 419 78 HOH HOH . 
H 4 HOH B 20 420 160 HOH HOH . 
H 4 HOH B 21 421 85 HOH HOH . 
H 4 HOH B 22 422 74 HOH HOH . 
H 4 HOH B 23 423 140 HOH HOH . 
H 4 HOH B 24 424 89 HOH HOH . 
H 4 HOH B 25 425 81 HOH HOH . 
H 4 HOH B 26 426 121 HOH HOH . 
H 4 HOH B 27 427 165 HOH HOH . 
H 4 HOH B 28 428 82 HOH HOH . 
H 4 HOH B 29 429 72 HOH HOH . 
H 4 HOH B 30 430 75 HOH HOH . 
H 4 HOH B 31 431 100 HOH HOH . 
H 4 HOH B 32 432 66 HOH HOH . 
H 4 HOH B 33 433 67 HOH HOH . 
H 4 HOH B 34 434 163 HOH HOH . 
H 4 HOH B 35 435 154 HOH HOH . 
H 4 HOH B 36 436 199 HOH HOH . 
H 4 HOH B 37 437 80 HOH HOH . 
H 4 HOH B 38 438 151 HOH HOH . 
H 4 HOH B 39 439 95 HOH HOH . 
H 4 HOH B 40 440 161 HOH HOH . 
H 4 HOH B 41 441 76 HOH HOH . 
H 4 HOH B 42 442 86 HOH HOH . 
H 4 HOH B 43 443 79 HOH HOH . 
H 4 HOH B 44 444 93 HOH HOH . 
H 4 HOH B 45 445 201 HOH HOH . 
H 4 HOH B 46 446 68 HOH HOH . 
H 4 HOH B 47 447 98 HOH HOH . 
H 4 HOH B 48 448 104 HOH HOH . 
H 4 HOH B 49 449 92 HOH HOH . 
H 4 HOH B 50 450 211 HOH HOH . 
H 4 HOH B 51 451 94 HOH HOH . 
H 4 HOH B 52 452 83 HOH HOH . 
H 4 HOH B 53 453 157 HOH HOH . 
H 4 HOH B 54 454 162 HOH HOH . 
H 4 HOH B 55 455 145 HOH HOH . 
H 4 HOH B 56 456 77 HOH HOH . 
H 4 HOH B 57 457 150 HOH HOH . 
H 4 HOH B 58 458 159 HOH HOH . 
H 4 HOH B 59 459 149 HOH HOH . 
H 4 HOH B 60 460 164 HOH HOH . 
H 4 HOH B 61 461 101 HOH HOH . 
H 4 HOH B 62 462 90 HOH HOH . 
H 4 HOH B 63 463 102 HOH HOH . 
H 4 HOH B 64 464 178 HOH HOH . 
H 4 HOH B 65 465 156 HOH HOH . 
H 4 HOH B 66 466 168 HOH HOH . 
H 4 HOH B 67 467 97 HOH HOH . 
H 4 HOH B 68 468 153 HOH HOH . 
H 4 HOH B 69 469 148 HOH HOH . 
H 4 HOH B 70 470 136 HOH HOH . 
H 4 HOH B 71 471 144 HOH HOH . 
H 4 HOH B 72 472 173 HOH HOH . 
H 4 HOH B 73 473 194 HOH HOH . 
H 4 HOH B 74 474 143 HOH HOH . 
H 4 HOH B 75 475 91 HOH HOH . 
H 4 HOH B 76 476 139 HOH HOH . 
H 4 HOH B 77 477 99 HOH HOH . 
H 4 HOH B 78 478 84 HOH HOH . 
H 4 HOH B 79 479 174 HOH HOH . 
H 4 HOH B 80 480 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 8WO . . . D 3 16.65 18.064 15.609 1 7.32 ? C4 8WO 302 A 1 
HETATM 2 C C5 8WO . . . D 3 16.852 17.045 14.705 1 8.09 ? C5 8WO 302 A 1 
HETATM 3 C C2 8WO . . . D 3 14.602 18.616 14.483 1 6.94 ? C2 8WO 302 A 1 
HETATM 4 C C3 8WO . . . D 3 15.517 18.841 15.487 1 8.39 ? C3 8WO 302 A 1 
HETATM 5 C C1 8WO . . . D 3 15.915 16.843 13.713 1 8.01 ? C1 8WO 302 A 1 
HETATM 6 C C6 8WO . . . D 3 15.305 19.936 16.438 1 8.74 ? C6 8WO 302 A 1 
HETATM 7 C C8 8WO . . . D 3 13.878 17.382 12.57 1 7.07 ? C8 8WO 302 A 1 
HETATM 8 C C7 8WO . . . D 3 17.104 14.939 13.106 1 9.89 ? C7 8WO 302 A 1 
HETATM 9 N N1 8WO . . . D 3 14.837 17.623 13.635 1 7.08 ? N1 8WO 302 A 1 
HETATM 10 N N2 8WO . . . D 3 14.007 20.353 16.571 1 9.61 ? N2 8WO 302 A 1 
HETATM 11 O O1 8WO . . . D 3 16.27 20.405 17.022 1 11.7 ? O1 8WO 302 A 1 
HETATM 12 O O2 8WO . . . D 3 16.06 15.838 12.767 1 8.97 ? O2 8WO 302 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#