data_5YJP # _model_server_result.job_id vsbilm-gW98DNjp54H3OMg _model_server_result.datetime_utc '2024-11-28 17:03:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5YJP # _exptl.entry_id 5YJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YJP _cell.length_a 75.089 _cell.length_b 75.089 _cell.length_c 49.75 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 42 1_555 A SG CYS 46 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 123 A CYS 136 1_555 A SG CYS 188 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 154 A CYS 168 1_555 A SG CYS 167 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? covale ? covale1 A ND2 ASN 59 A ASN 72 1_555 B C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 82 A ASN 95 1_555 C C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A NE2 HIS 10 A HIS 25 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc2 A OE2 GLU 64 A GLU 77 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc3 A OE2 GLU 71 A GLU 84 1_555 D ZN ZN . A ZN 303 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc4 A NZ LYS 96 A LYS 109 1_555 D ZN ZN . A ZN 303 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YJP _atom_sites.fract_transf_matrix[1][1] 0.013318 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 301 NAG NAG . C 2 NAG A 1 302 302 NAG NAG . D 3 ZN A 1 303 303 ZN ZN . E 4 8W6 A 1 304 401 8W6 ASB . F 5 HOH A 1 401 89 HOH HOH . F 5 HOH A 2 402 59 HOH HOH . F 5 HOH A 3 403 70 HOH HOH . F 5 HOH A 4 404 32 HOH HOH . F 5 HOH A 5 405 14 HOH HOH . F 5 HOH A 6 406 58 HOH HOH . F 5 HOH A 7 407 50 HOH HOH . F 5 HOH A 8 408 68 HOH HOH . F 5 HOH A 9 409 41 HOH HOH . F 5 HOH A 10 410 46 HOH HOH . F 5 HOH A 11 411 42 HOH HOH . F 5 HOH A 12 412 49 HOH HOH . F 5 HOH A 13 413 5 HOH HOH . F 5 HOH A 14 414 63 HOH HOH . F 5 HOH A 15 415 62 HOH HOH . F 5 HOH A 16 416 91 HOH HOH . F 5 HOH A 17 417 8 HOH HOH . F 5 HOH A 18 418 10 HOH HOH . F 5 HOH A 19 419 86 HOH HOH . F 5 HOH A 20 420 39 HOH HOH . F 5 HOH A 21 421 35 HOH HOH . F 5 HOH A 22 422 61 HOH HOH . F 5 HOH A 23 423 11 HOH HOH . F 5 HOH A 24 424 55 HOH HOH . F 5 HOH A 25 425 25 HOH HOH . F 5 HOH A 26 426 47 HOH HOH . F 5 HOH A 27 427 64 HOH HOH . F 5 HOH A 28 428 9 HOH HOH . F 5 HOH A 29 429 45 HOH HOH . F 5 HOH A 30 430 83 HOH HOH . F 5 HOH A 31 431 2 HOH HOH . F 5 HOH A 32 432 93 HOH HOH . F 5 HOH A 33 433 15 HOH HOH . F 5 HOH A 34 434 24 HOH HOH . F 5 HOH A 35 435 30 HOH HOH . F 5 HOH A 36 436 57 HOH HOH . F 5 HOH A 37 437 19 HOH HOH . F 5 HOH A 38 438 99 HOH HOH . F 5 HOH A 39 439 71 HOH HOH . F 5 HOH A 40 440 28 HOH HOH . F 5 HOH A 41 441 37 HOH HOH . F 5 HOH A 42 442 69 HOH HOH . F 5 HOH A 43 443 36 HOH HOH . F 5 HOH A 44 444 98 HOH HOH . F 5 HOH A 45 445 97 HOH HOH . F 5 HOH A 46 446 54 HOH HOH . F 5 HOH A 47 447 56 HOH HOH . F 5 HOH A 48 448 3 HOH HOH . F 5 HOH A 49 449 48 HOH HOH . F 5 HOH A 50 450 1 HOH HOH . F 5 HOH A 51 451 84 HOH HOH . F 5 HOH A 52 452 72 HOH HOH . F 5 HOH A 53 453 7 HOH HOH . F 5 HOH A 54 454 17 HOH HOH . F 5 HOH A 55 455 82 HOH HOH . F 5 HOH A 56 456 43 HOH HOH . F 5 HOH A 57 457 18 HOH HOH . F 5 HOH A 58 458 74 HOH HOH . F 5 HOH A 59 459 12 HOH HOH . F 5 HOH A 60 460 26 HOH HOH . F 5 HOH A 61 461 76 HOH HOH . F 5 HOH A 62 462 80 HOH HOH . F 5 HOH A 63 463 22 HOH HOH . F 5 HOH A 64 464 4 HOH HOH . F 5 HOH A 65 465 33 HOH HOH . F 5 HOH A 66 466 20 HOH HOH . F 5 HOH A 67 467 100 HOH HOH . F 5 HOH A 68 468 53 HOH HOH . F 5 HOH A 69 469 21 HOH HOH . F 5 HOH A 70 470 29 HOH HOH . F 5 HOH A 71 471 101 HOH HOH . F 5 HOH A 72 472 40 HOH HOH . F 5 HOH A 73 473 102 HOH HOH . F 5 HOH A 74 474 31 HOH HOH . F 5 HOH A 75 475 6 HOH HOH . F 5 HOH A 76 476 34 HOH HOH . F 5 HOH A 77 477 79 HOH HOH . F 5 HOH A 78 478 60 HOH HOH . F 5 HOH A 79 479 44 HOH HOH . F 5 HOH A 80 480 23 HOH HOH . F 5 HOH A 81 481 87 HOH HOH . F 5 HOH A 82 482 81 HOH HOH . F 5 HOH A 83 483 38 HOH HOH . F 5 HOH A 84 484 16 HOH HOH . F 5 HOH A 85 485 13 HOH HOH . F 5 HOH A 86 486 95 HOH HOH . F 5 HOH A 87 487 88 HOH HOH . F 5 HOH A 88 488 66 HOH HOH . F 5 HOH A 89 489 85 HOH HOH . F 5 HOH A 90 490 27 HOH HOH . F 5 HOH A 91 491 96 HOH HOH . F 5 HOH A 92 492 52 HOH HOH . F 5 HOH A 93 493 51 HOH HOH . F 5 HOH A 94 494 90 HOH HOH . F 5 HOH A 95 495 65 HOH HOH . F 5 HOH A 96 496 77 HOH HOH . F 5 HOH A 97 497 73 HOH HOH . F 5 HOH A 98 498 67 HOH HOH . F 5 HOH A 99 499 78 HOH HOH . F 5 HOH A 100 500 94 HOH HOH . F 5 HOH A 101 501 75 HOH HOH . F 5 HOH A 102 502 92 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 1.708 _atom_site.Cartn_y -32.608 _atom_site.Cartn_z 13.203 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #