data_5YJX
#
_model_server_result.job_id            Two7kZR6yLAwPFZGaF3YEA 
_model_server_result.datetime_utc      '2024-11-28 03:31:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yjx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":601}' 
#
_entry.id    5YJX 
#
_exptl.entry_id    5YJX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YJX 
_cell.length_a            70.336 
_cell.length_b            116.401 
_cell.length_c            166.619 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YJX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 148 A ALA 175 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc2 C O2P FAD . A FAD 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc3 C O1P FAD . A FAD 601 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc4 C O1A FAD . A FAD 601 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc5 C O2A FAD . A FAD 601 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc6 C O3P FAD . A FAD 601 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
metalc ? metalc7 B O ALA 148 B ALA 175 1_555 L MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc8 B O ILE 354 B ILE 381 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? 
metalc ? metalc9 B OD1 ASN 357 B ASN 384 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? 
metalc ? metalc10 J O2P FAD . B FAD 601 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc11 J O1P FAD . B FAD 601 1_555 L MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc12 J O1A FAD . B FAD 601 1_555 M MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc13 J O2A FAD . B FAD 601 1_555 N MG MG . B MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 70 n n 
PA O2A FAD sing 71 n n 
PA O5B FAD sing 72 n n 
PA O3P FAD sing 73 n n 
O2A HOA2 FAD sing 74 n n 
O5B C5B FAD sing 75 n n 
C5B C4B FAD sing 76 n n 
C5B H51A FAD sing 77 n n 
C5B H52A FAD sing 78 n n 
C4B O4B FAD sing 79 n n 
C4B C3B FAD sing 80 n n 
C4B H4B FAD sing 81 n n 
O4B C1B FAD sing 82 n n 
C3B O3B FAD sing 83 n n 
C3B C2B FAD sing 84 n n 
C3B H3B FAD sing 85 n n 
O3B HO3A FAD sing 86 n n 
C2B O2B FAD sing 87 n n 
C2B C1B FAD sing 88 n n 
C2B H2B FAD sing 89 n n 
O2B HO2A FAD sing 90 n n 
C1B N9A FAD sing 91 n n 
C1B H1B FAD sing 92 n n 
N9A C8A FAD sing 93 n y 
N9A C4A FAD sing 94 n y 
C8A N7A FAD doub 95 n y 
C8A H8A FAD sing 96 n n 
N7A C5A FAD sing 97 n y 
C5A C6A FAD sing 98 n y 
C5A C4A FAD doub 99 n y 
C6A N6A FAD sing 100 n n 
C6A N1A FAD doub 101 n y 
N6A H61A FAD sing 102 n n 
N6A H62A FAD sing 103 n n 
N1A C2A FAD sing 104 n y 
C2A N3A FAD doub 105 n y 
C2A H2A FAD sing 106 n n 
N3A C4A FAD sing 107 n y 
N1 C2 FAD sing 108 n n 
N1 C10 FAD doub 109 n n 
C2 O2 FAD doub 110 n n 
C2 N3 FAD sing 111 n n 
N3 C4 FAD sing 112 n n 
N3 HN3 FAD sing 113 n n 
C4 O4 FAD doub 114 n n 
C4 C4X FAD sing 115 n n 
C4X N5 FAD doub 116 n n 
C4X C10 FAD sing 117 n n 
N5 C5X FAD sing 118 n n 
C5X C6 FAD doub 119 n y 
C5X C9A FAD sing 120 n y 
C6 C7 FAD sing 121 n y 
C6 H6 FAD sing 122 n n 
C7 C7M FAD sing 123 n n 
C7 C8 FAD doub 124 n y 
C7M HM71 FAD sing 125 n n 
C7M HM72 FAD sing 126 n n 
C7M HM73 FAD sing 127 n n 
C8 C8M FAD sing 128 n n 
C8 C9 FAD sing 129 n y 
C8M HM81 FAD sing 130 n n 
C8M HM82 FAD sing 131 n n 
C8M HM83 FAD sing 132 n n 
C9 C9A FAD doub 133 n y 
C9 H9 FAD sing 134 n n 
C9A N10 FAD sing 135 n n 
N10 C10 FAD sing 136 n n 
N10 C1' FAD sing 137 n n 
C1' C2' FAD sing 138 n n 
C1' "H1'1" FAD sing 139 n n 
C1' "H1'2" FAD sing 140 n n 
C2' O2' FAD sing 141 n n 
C2' C3' FAD sing 142 n n 
C2' H2' FAD sing 143 n n 
O2' HO2' FAD sing 144 n n 
C3' O3' FAD sing 145 n n 
C3' C4' FAD sing 146 n n 
C3' H3' FAD sing 147 n n 
O3' HO3' FAD sing 148 n n 
C4' O4' FAD sing 149 n n 
C4' C5' FAD sing 150 n n 
C4' H4' FAD sing 151 n n 
O4' HO4' FAD sing 152 n n 
C5' O5' FAD sing 153 n n 
C5' "H5'1" FAD sing 154 n n 
C5' "H5'2" FAD sing 155 n n 
O5' P FAD sing 156 n n 
P O1P FAD doub 157 n n 
P O2P FAD sing 158 n n 
P O3P FAD sing 159 n n 
O2P HOP2 FAD sing 160 n n 
#
_atom_sites.entry_id                     5YJX 
_atom_sites.fract_transf_matrix[1][1]    0.014217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 601 601 FAD FAD . 
D 3 MG A 1 602 602 MG MG . 
E 3 MG A 1 603 603 MG MG . 
F 3 MG A 1 604 604 MG MG . 
G 3 MG A 1 605 605 MG MG . 
H 4 MES A 1 606 701 MES MES . 
I 5 MYX A 1 607 801 MYX MYX . 
J 2 FAD B 1 601 601 FAD FAD . 
K 3 MG B 1 602 602 MG MG . 
L 3 MG B 1 603 603 MG MG . 
M 3 MG B 1 604 604 MG MG . 
N 3 MG B 1 605 605 MG MG . 
O 4 MES B 1 606 701 MES MES . 
P 5 MYX B 1 607 801 MYX MYX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . J 2 18.732 16.484 19.192 1 51.25 ? PA FAD 601 B 1 
HETATM 2 O O1A FAD . . . J 2 17.266 16.524 19.567 1 46.59 ? O1A FAD 601 B 1 
HETATM 3 O O2A FAD . . . J 2 19.701 17.522 19.696 1 55.1 ? O2A FAD 601 B 1 
HETATM 4 O O5B FAD . . . J 2 19.282 15.03 19.551 1 50.68 ? O5B FAD 601 B 1 
HETATM 5 C C5B FAD . . . J 2 20.648 14.682 19.39 1 49.47 ? C5B FAD 601 B 1 
HETATM 6 C C4B FAD . . . J 2 20.856 13.43 20.226 1 49.47 ? C4B FAD 601 B 1 
HETATM 7 O O4B FAD . . . J 2 22.115 12.802 19.993 1 48.21 ? O4B FAD 601 B 1 
HETATM 8 C C3B FAD . . . J 2 20.802 13.74 21.708 1 49.81 ? C3B FAD 601 B 1 
HETATM 9 O O3B FAD . . . J 2 19.995 12.754 22.364 1 48.21 ? O3B FAD 601 B 1 
HETATM 10 C C2B FAD . . . J 2 22.245 13.668 22.156 1 50.65 ? C2B FAD 601 B 1 
HETATM 11 O O2B FAD . . . J 2 22.295 13.334 23.553 1 55.22 ? O2B FAD 601 B 1 
HETATM 12 C C1B FAD . . . J 2 22.802 12.601 21.22 1 48.41 ? C1B FAD 601 B 1 
HETATM 13 N N9A FAD . . . J 2 24.227 12.659 20.848 1 46.68 ? N9A FAD 601 B 1 
HETATM 14 C C8A FAD . . . J 2 25.012 13.743 20.81 1 47.71 ? C8A FAD 601 B 1 
HETATM 15 N N7A FAD . . . J 2 26.257 13.4 20.38 1 48.97 ? N7A FAD 601 B 1 
HETATM 16 C C5A FAD . . . J 2 26.269 12.088 20.131 1 46.22 ? C5A FAD 601 B 1 
HETATM 17 C C6A FAD . . . J 2 27.261 11.106 19.663 1 46.93 ? C6A FAD 601 B 1 
HETATM 18 N N6A FAD . . . J 2 28.522 11.488 19.366 1 47.93 ? N6A FAD 601 B 1 
HETATM 19 N N1A FAD . . . J 2 26.869 9.817 19.541 1 49.02 ? N1A FAD 601 B 1 
HETATM 20 C C2A FAD . . . J 2 25.615 9.41 19.827 1 48.56 ? C2A FAD 601 B 1 
HETATM 21 N N3A FAD . . . J 2 24.663 10.271 20.255 1 49.17 ? N3A FAD 601 B 1 
HETATM 22 C C4A FAD . . . J 2 24.923 11.6 20.425 1 46.86 ? C4A FAD 601 B 1 
HETATM 23 N N1 FAD . . . J 2 12.625 23.483 17.967 1 79.05 ? N1 FAD 601 B 1 
HETATM 24 C C2 FAD . . . J 2 11.307 23.69 17.744 1 86.94 ? C2 FAD 601 B 1 
HETATM 25 O O2 FAD . . . J 2 10.846 23.313 16.637 1 93.77 ? O2 FAD 601 B 1 
HETATM 26 N N3 FAD . . . J 2 10.493 24.283 18.656 1 85.12 ? N3 FAD 601 B 1 
HETATM 27 C C4 FAD . . . J 2 10.922 24.712 19.844 1 80.95 ? C4 FAD 601 B 1 
HETATM 28 O O4 FAD . . . J 2 10.124 25.253 20.641 1 78.73 ? O4 FAD 601 B 1 
HETATM 29 C C4X FAD . . . J 2 12.359 24.515 20.161 1 82.19 ? C4X FAD 601 B 1 
HETATM 30 N N5 FAD . . . J 2 12.898 24.907 21.338 1 86.14 ? N5 FAD 601 B 1 
HETATM 31 C C5X FAD . . . J 2 14.219 24.701 21.589 1 82.26 ? C5X FAD 601 B 1 
HETATM 32 C C6 FAD . . . J 2 14.729 25.113 22.811 1 79.62 ? C6 FAD 601 B 1 
HETATM 33 C C7 FAD . . . J 2 16.069 24.927 23.105 1 76.86 ? C7 FAD 601 B 1 
HETATM 34 C C7M FAD . . . J 2 16.596 25.382 24.433 1 80.54 ? C7M FAD 601 B 1 
HETATM 35 C C8 FAD . . . J 2 16.97 24.282 22.122 1 76.08 ? C8 FAD 601 B 1 
HETATM 36 C C8M FAD . . . J 2 18.424 24.071 22.446 1 78.25 ? C8M FAD 601 B 1 
HETATM 37 C C9 FAD . . . J 2 16.473 23.863 20.898 1 77.02 ? C9 FAD 601 B 1 
HETATM 38 C C9A FAD . . . J 2 15.124 24.045 20.579 1 78.36 ? C9A FAD 601 B 1 
HETATM 39 N N10 FAD . . . J 2 14.57 23.629 19.334 1 73.56 ? N10 FAD 601 B 1 
HETATM 40 C C10 FAD . . . J 2 13.199 23.859 19.118 1 77.59 ? C10 FAD 601 B 1 
HETATM 41 C C1' FAD . . . J 2 15.354 22.993 18.264 1 65.96 ? C1' FAD 601 B 1 
HETATM 42 C C2' FAD . . . J 2 15.146 21.494 18.229 1 62.86 ? C2' FAD 601 B 1 
HETATM 43 O O2' FAD . . . J 2 15.026 20.965 19.557 1 61.06 ? O2' FAD 601 B 1 
HETATM 44 C C3' FAD . . . J 2 16.299 20.811 17.506 1 59.82 ? C3' FAD 601 B 1 
HETATM 45 O O3' FAD . . . J 2 16.367 21.233 16.133 1 54.91 ? O3' FAD 601 B 1 
HETATM 46 C C4' FAD . . . J 2 16.085 19.309 17.638 1 58.59 ? C4' FAD 601 B 1 
HETATM 47 O O4' FAD . . . J 2 16.523 18.903 18.936 1 56.19 ? O4' FAD 601 B 1 
HETATM 48 C C5' FAD . . . J 2 16.841 18.505 16.601 1 60.44 ? C5' FAD 601 B 1 
HETATM 49 O O5' FAD . . . J 2 16.616 17.125 16.873 1 61.46 ? O5' FAD 601 B 1 
HETATM 50 P P FAD . . . J 2 17.802 16.096 16.534 1 63.15 ? P FAD 601 B 1 
HETATM 51 O O1P FAD . . . J 2 17.28 14.703 16.808 1 64.01 ? O1P FAD 601 B 1 
HETATM 52 O O2P FAD . . . J 2 18.376 16.495 15.199 1 59.96 ? O2P FAD 601 B 1 
HETATM 53 O O3P FAD . . . J 2 18.964 16.454 17.599 1 59.04 ? O3P FAD 601 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#