data_5YJX # _model_server_result.job_id cMMbSMHH9hFRWzs2PgG2kQ _model_server_result.datetime_utc '2025-02-17 18:43:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yjx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":607}' # _entry.id 5YJX # _exptl.entry_id 5YJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 487.678 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2Z,6E)-7-{2'-[(2E,4E)-1,6-DIMETHYLHEPTA-2,4-DIENYL]-2,4'-BI-1,3-THIAZOL-4-YL}-3,5-DIMETHOXY-4-METHYLHEPTA-2,6-DIENAMID E" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YJX _cell.length_a 70.336 _cell.length_b 116.401 _cell.length_c 166.619 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 148 A ALA 175 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc2 C O2P FAD . A FAD 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc3 C O1P FAD . A FAD 601 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc4 C O1A FAD . A FAD 601 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc5 C O2A FAD . A FAD 601 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 C O3P FAD . A FAD 601 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc7 B O ALA 148 B ALA 175 1_555 L MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc8 B O ILE 354 B ILE 381 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc9 B OD1 ASN 357 B ASN 384 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc10 J O2P FAD . B FAD 601 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc11 J O1P FAD . B FAD 601 1_555 L MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc12 J O1A FAD . B FAD 601 1_555 M MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc13 J O2A FAD . B FAD 601 1_555 N MG MG . B MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'C25 H33 N3 O3 S2' _chem_comp.formula_weight 487.678 _chem_comp.id MYX _chem_comp.mon_nstd_flag . _chem_comp.name "(2Z,6E)-7-{2'-[(2E,4E)-1,6-DIMETHYLHEPTA-2,4-DIENYL]-2,4'-BI-1,3-THIAZOL-4-YL}-3,5-DIMETHOXY-4-METHYLHEPTA-2,6-DIENAMID E" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "7-[2'-(1,6-DIMETHYL-HEPTA-2,4-DIENYL)-[2,4']BITHIAZOLYL-4-YL]-3,5-DIMETHOXY-4-METHYL-HEPTA-2,6-DIENOIC ACID AMIDE;MYXOTHIAZOL" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 MYX doub 338 n n C1 N1 MYX sing 339 n n C1 C2 MYX sing 340 n n N1 HN11 MYX sing 341 n n N1 HN12 MYX sing 342 n n C2 C3 MYX doub 343 e n C2 H2 MYX sing 344 n n C3 O2 MYX sing 345 n n C3 C5 MYX sing 346 n n O2 C4 MYX sing 347 n n C4 H41 MYX sing 348 n n C4 H42 MYX sing 349 n n C4 H43 MYX sing 350 n n C5 C6 MYX sing 351 n n C5 C7 MYX sing 352 n n C5 H5 MYX sing 353 n n C6 H61 MYX sing 354 n n C6 H62 MYX sing 355 n n C6 H63 MYX sing 356 n n C7 O3 MYX sing 357 n n C7 C9 MYX sing 358 n n C7 H7 MYX sing 359 n n O3 C8 MYX sing 360 n n C8 H81 MYX sing 361 n n C8 H82 MYX sing 362 n n C8 H83 MYX sing 363 n n C9 C10 MYX doub 364 e n C9 H9 MYX sing 365 n n C10 C11 MYX sing 366 n n C10 H10 MYX sing 367 n n C11 C12 MYX doub 368 n y C11 N2 MYX sing 369 n y C12 S1 MYX sing 370 n y C12 H12 MYX sing 371 n n N2 C13 MYX doub 372 n y C13 C14 MYX sing 373 n y C13 S1 MYX sing 374 n y C14 C15 MYX doub 375 n y C14 N3 MYX sing 376 n y C15 S2 MYX sing 377 n y C15 H15 MYX sing 378 n n N3 C16 MYX doub 379 n y C16 C17 MYX sing 380 n n C16 S2 MYX sing 381 n y C17 C18 MYX sing 382 n n C17 C19 MYX sing 383 n n C17 H17 MYX sing 384 n n C18 H181 MYX sing 385 n n C18 H182 MYX sing 386 n n C18 H183 MYX sing 387 n n C19 C20 MYX doub 388 e n C19 H19 MYX sing 389 n n C20 C21 MYX sing 390 n n C20 H20 MYX sing 391 n n C21 C22 MYX doub 392 e n C21 H21 MYX sing 393 n n C22 C23 MYX sing 394 n n C22 H22 MYX sing 395 n n C23 C24 MYX sing 396 n n C23 C25 MYX sing 397 n n C23 H23 MYX sing 398 n n C24 H241 MYX sing 399 n n C24 H242 MYX sing 400 n n C24 H243 MYX sing 401 n n C25 H251 MYX sing 402 n n C25 H252 MYX sing 403 n n C25 H253 MYX sing 404 n n # _atom_sites.entry_id 5YJX _atom_sites.fract_transf_matrix[1][1] 0.014217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 601 601 FAD FAD . D 3 MG A 1 602 602 MG MG . E 3 MG A 1 603 603 MG MG . F 3 MG A 1 604 604 MG MG . G 3 MG A 1 605 605 MG MG . H 4 MES A 1 606 701 MES MES . I 5 MYX A 1 607 801 MYX MYX . J 2 FAD B 1 601 601 FAD FAD . K 3 MG B 1 602 602 MG MG . L 3 MG B 1 603 603 MG MG . M 3 MG B 1 604 604 MG MG . N 3 MG B 1 605 605 MG MG . O 4 MES B 1 606 701 MES MES . P 5 MYX B 1 607 801 MYX MYX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MYX . . . I 5 1.612 17.83 68.839 1 127.55 ? O1 MYX 607 A 1 HETATM 2 C C1 MYX . . . I 5 1.552 17.532 67.657 1 129.75 ? C1 MYX 607 A 1 HETATM 3 N N1 MYX . . . I 5 0.54 17.961 66.903 1 132.38 ? N1 MYX 607 A 1 HETATM 4 C C2 MYX . . . I 5 2.649 16.694 67.125 1 131.09 ? C2 MYX 607 A 1 HETATM 5 C C3 MYX . . . I 5 2.748 16.236 65.855 1 131.53 ? C3 MYX 607 A 1 HETATM 6 O O2 MYX . . . I 5 1.726 16.56 64.861 1 128.79 ? O2 MYX 607 A 1 HETATM 7 C C4 MYX . . . I 5 0.672 15.643 64.535 1 125.97 ? C4 MYX 607 A 1 HETATM 8 C C5 MYX . . . I 5 3.964 15.395 65.518 1 131.6 ? C5 MYX 607 A 1 HETATM 9 C C6 MYX . . . I 5 5.19 16.179 65.971 1 129.73 ? C6 MYX 607 A 1 HETATM 10 C C7 MYX . . . I 5 4.137 15.029 64.031 1 134.68 ? C7 MYX 607 A 1 HETATM 11 O O3 MYX . . . I 5 5.045 15.961 63.413 1 127.86 ? O3 MYX 607 A 1 HETATM 12 C C8 MYX . . . I 5 6.063 15.426 62.565 1 127.3 ? C8 MYX 607 A 1 HETATM 13 C C9 MYX . . . I 5 4.552 13.569 63.821 1 138.44 ? C9 MYX 607 A 1 HETATM 14 C C10 MYX . . . I 5 5.43 12.904 64.584 1 142.91 ? C10 MYX 607 A 1 HETATM 15 C C11 MYX . . . I 5 5.783 11.471 64.332 1 139.84 ? C11 MYX 607 A 1 HETATM 16 C C12 MYX . . . I 5 5.296 10.741 63.25 1 140.91 ? C12 MYX 607 A 1 HETATM 17 N N2 MYX . . . I 5 6.603 10.818 65.195 1 136.38 ? N2 MYX 607 A 1 HETATM 18 C C13 MYX . . . I 5 6.713 9.538 64.774 1 142.91 ? C13 MYX 607 A 1 HETATM 19 C C14 MYX . . . I 5 7.6 8.566 65.458 1 152.9 ? C14 MYX 607 A 1 HETATM 20 C C15 MYX . . . I 5 7.318 7.803 66.575 1 160.67 ? C15 MYX 607 A 1 HETATM 21 N N3 MYX . . . I 5 8.818 8.443 64.917 1 164.91 ? N3 MYX 607 A 1 HETATM 22 C C16 MYX . . . I 5 9.576 7.561 65.599 1 167.88 ? C16 MYX 607 A 1 HETATM 23 C C17 MYX . . . I 5 10.969 7.163 65.295 1 168.53 ? C17 MYX 607 A 1 HETATM 24 C C18 MYX . . . I 5 11.08 7.315 63.783 1 168.09 ? C18 MYX 607 A 1 HETATM 25 C C19 MYX . . . I 5 12.014 8.112 65.859 1 167.61 ? C19 MYX 607 A 1 HETATM 26 C C20 MYX . . . I 5 12.777 7.917 66.944 1 166.69 ? C20 MYX 607 A 1 HETATM 27 C C21 MYX . . . I 5 12.721 6.749 67.825 1 164.89 ? C21 MYX 607 A 1 HETATM 28 C C22 MYX . . . I 5 13.522 6.718 68.894 1 154.08 ? C22 MYX 607 A 1 HETATM 29 C C23 MYX . . . I 5 13.519 5.554 69.861 1 148.33 ? C23 MYX 607 A 1 HETATM 30 C C24 MYX . . . I 5 12.13 5.396 70.477 1 145.55 ? C24 MYX 607 A 1 HETATM 31 C C25 MYX . . . I 5 13.979 4.278 69.161 1 145.98 ? C25 MYX 607 A 1 HETATM 32 S S1 MYX . . . I 5 5.906 9.115 63.297 1 147 ? S1 MYX 607 A 1 HETATM 33 S S2 MYX . . . I 5 8.726 6.843 66.95 1 165.06 ? S2 MYX 607 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #