data_5YJX
#
_model_server_result.job_id            yeDEi2qzKpBfUI_KESpODQ 
_model_server_result.datetime_utc      '2024-11-28 04:06:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yjx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":607}' 
#
_entry.id    5YJX 
#
_exptl.entry_id    5YJX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              487.678 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2Z,6E)-7-{2'-[(2E,4E)-1,6-DIMETHYLHEPTA-2,4-DIENYL]-2,4'-BI-1,3-THIAZOL-4-YL}-3,5-DIMETHOXY-4-METHYLHEPTA-2,6-DIENAMID E" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YJX 
_cell.length_a            70.336 
_cell.length_b            116.401 
_cell.length_c            166.619 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YJX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 148 A ALA 175 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc2 C O2P FAD . A FAD 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc3 C O1P FAD . A FAD 601 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc4 C O1A FAD . A FAD 601 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc5 C O2A FAD . A FAD 601 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc6 C O3P FAD . A FAD 601 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
metalc ? metalc7 B O ALA 148 B ALA 175 1_555 L MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc8 B O ILE 354 B ILE 381 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? 
metalc ? metalc9 B OD1 ASN 357 B ASN 384 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? 
metalc ? metalc10 J O2P FAD . B FAD 601 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc11 J O1P FAD . B FAD 601 1_555 L MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc12 J O1A FAD . B FAD 601 1_555 M MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc13 J O2A FAD . B FAD 601 1_555 N MG MG . B MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
#
_chem_comp.formula           'C25 H33 N3 O3 S2' 
_chem_comp.formula_weight    487.678 
_chem_comp.id                MYX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2Z,6E)-7-{2'-[(2E,4E)-1,6-DIMETHYLHEPTA-2,4-DIENYL]-2,4'-BI-1,3-THIAZOL-4-YL}-3,5-DIMETHOXY-4-METHYLHEPTA-2,6-DIENAMID E" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "7-[2'-(1,6-DIMETHYL-HEPTA-2,4-DIENYL)-[2,4']BITHIAZOLYL-4-YL]-3,5-DIMETHOXY-4-METHYL-HEPTA-2,6-DIENOIC ACID AMIDE;MYXOTHIAZOL" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 MYX doub 338 n n 
C1 N1 MYX sing 339 n n 
C1 C2 MYX sing 340 n n 
N1 HN11 MYX sing 341 n n 
N1 HN12 MYX sing 342 n n 
C2 C3 MYX doub 343 e n 
C2 H2 MYX sing 344 n n 
C3 O2 MYX sing 345 n n 
C3 C5 MYX sing 346 n n 
O2 C4 MYX sing 347 n n 
C4 H41 MYX sing 348 n n 
C4 H42 MYX sing 349 n n 
C4 H43 MYX sing 350 n n 
C5 C6 MYX sing 351 n n 
C5 C7 MYX sing 352 n n 
C5 H5 MYX sing 353 n n 
C6 H61 MYX sing 354 n n 
C6 H62 MYX sing 355 n n 
C6 H63 MYX sing 356 n n 
C7 O3 MYX sing 357 n n 
C7 C9 MYX sing 358 n n 
C7 H7 MYX sing 359 n n 
O3 C8 MYX sing 360 n n 
C8 H81 MYX sing 361 n n 
C8 H82 MYX sing 362 n n 
C8 H83 MYX sing 363 n n 
C9 C10 MYX doub 364 e n 
C9 H9 MYX sing 365 n n 
C10 C11 MYX sing 366 n n 
C10 H10 MYX sing 367 n n 
C11 C12 MYX doub 368 n y 
C11 N2 MYX sing 369 n y 
C12 S1 MYX sing 370 n y 
C12 H12 MYX sing 371 n n 
N2 C13 MYX doub 372 n y 
C13 C14 MYX sing 373 n y 
C13 S1 MYX sing 374 n y 
C14 C15 MYX doub 375 n y 
C14 N3 MYX sing 376 n y 
C15 S2 MYX sing 377 n y 
C15 H15 MYX sing 378 n n 
N3 C16 MYX doub 379 n y 
C16 C17 MYX sing 380 n n 
C16 S2 MYX sing 381 n y 
C17 C18 MYX sing 382 n n 
C17 C19 MYX sing 383 n n 
C17 H17 MYX sing 384 n n 
C18 H181 MYX sing 385 n n 
C18 H182 MYX sing 386 n n 
C18 H183 MYX sing 387 n n 
C19 C20 MYX doub 388 e n 
C19 H19 MYX sing 389 n n 
C20 C21 MYX sing 390 n n 
C20 H20 MYX sing 391 n n 
C21 C22 MYX doub 392 e n 
C21 H21 MYX sing 393 n n 
C22 C23 MYX sing 394 n n 
C22 H22 MYX sing 395 n n 
C23 C24 MYX sing 396 n n 
C23 C25 MYX sing 397 n n 
C23 H23 MYX sing 398 n n 
C24 H241 MYX sing 399 n n 
C24 H242 MYX sing 400 n n 
C24 H243 MYX sing 401 n n 
C25 H251 MYX sing 402 n n 
C25 H252 MYX sing 403 n n 
C25 H253 MYX sing 404 n n 
#
_atom_sites.entry_id                     5YJX 
_atom_sites.fract_transf_matrix[1][1]    0.014217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 601 601 FAD FAD . 
D 3 MG A 1 602 602 MG MG . 
E 3 MG A 1 603 603 MG MG . 
F 3 MG A 1 604 604 MG MG . 
G 3 MG A 1 605 605 MG MG . 
H 4 MES A 1 606 701 MES MES . 
I 5 MYX A 1 607 801 MYX MYX . 
J 2 FAD B 1 601 601 FAD FAD . 
K 3 MG B 1 602 602 MG MG . 
L 3 MG B 1 603 603 MG MG . 
M 3 MG B 1 604 604 MG MG . 
N 3 MG B 1 605 605 MG MG . 
O 4 MES B 1 606 701 MES MES . 
P 5 MYX B 1 607 801 MYX MYX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MYX . . . P 5 1.675 16.41 16.8 1 128.7 ? O1 MYX 607 B 1 
HETATM 2 C C1 MYX . . . P 5 1.486 17.566 16.46 1 129.81 ? C1 MYX 607 B 1 
HETATM 3 N N1 MYX . . . P 5 0.246 18.034 16.359 1 131.95 ? N1 MYX 607 B 1 
HETATM 4 C C2 MYX . . . P 5 2.61 18.483 16.15 1 127.71 ? C2 MYX 607 B 1 
HETATM 5 C C3 MYX . . . P 5 3.906 18.11 16.195 1 137.84 ? C3 MYX 607 B 1 
HETATM 6 O O2 MYX . . . P 5 4.315 16.75 16.549 1 139.91 ? O2 MYX 607 B 1 
HETATM 7 C C4 MYX . . . P 5 4.578 16.344 17.895 1 140.12 ? C4 MYX 607 B 1 
HETATM 8 C C5 MYX . . . P 5 4.965 19.125 15.852 1 148.29 ? C5 MYX 607 B 1 
HETATM 9 C C6 MYX . . . P 5 5.758 18.61 14.661 1 147.43 ? C6 MYX 607 B 1 
HETATM 10 C C7 MYX . . . P 5 5.856 19.409 17.074 1 154.94 ? C7 MYX 607 B 1 
HETATM 11 O O3 MYX . . . P 5 7.172 18.85 16.972 1 150.14 ? O3 MYX 607 B 1 
HETATM 12 C C8 MYX . . . P 5 7.967 19.024 18.151 1 142.9 ? C8 MYX 607 B 1 
HETATM 13 C C9 MYX . . . P 5 5.995 20.892 17.302 1 161.8 ? C9 MYX 607 B 1 
HETATM 14 C C10 MYX . . . P 5 6.881 21.639 16.647 1 165.83 ? C10 MYX 607 B 1 
HETATM 15 C C11 MYX . . . P 5 6.997 23.089 16.947 1 167.54 ? C11 MYX 607 B 1 
HETATM 16 C C12 MYX . . . P 5 6.165 23.725 17.863 1 163.93 ? C12 MYX 607 B 1 
HETATM 17 N N2 MYX . . . P 5 7.978 23.822 16.37 1 164.6 ? N2 MYX 607 B 1 
HETATM 18 C C13 MYX . . . P 5 7.853 25.088 16.836 1 170.06 ? C13 MYX 607 B 1 
HETATM 19 C C14 MYX . . . P 5 8.806 26.152 16.411 1 176.47 ? C14 MYX 607 B 1 
HETATM 20 C C15 MYX . . . P 5 8.835 27.382 17.041 1 176.01 ? C15 MYX 607 B 1 
HETATM 21 N N3 MYX . . . P 5 9.719 25.915 15.438 1 179.7 ? N3 MYX 607 B 1 
HETATM 22 C C16 MYX . . . P 5 10.496 27.016 15.248 1 187.44 ? C16 MYX 607 B 1 
HETATM 23 C C17 MYX . . . P 5 11.612 27.215 14.279 1 190.55 ? C17 MYX 607 B 1 
HETATM 24 C C18 MYX . . . P 5 11.166 28.059 13.084 1 189.85 ? C18 MYX 607 B 1 
HETATM 25 C C19 MYX . . . P 5 12.865 27.785 14.929 1 188.99 ? C19 MYX 607 B 1 
HETATM 26 C C20 MYX . . . P 5 14.051 27.337 14.522 1 186.7 ? C20 MYX 607 B 1 
HETATM 27 C C21 MYX . . . P 5 15.311 27.811 15.082 1 181.28 ? C21 MYX 607 B 1 
HETATM 28 C C22 MYX . . . P 5 16.444 27.279 14.622 1 176.33 ? C22 MYX 607 B 1 
HETATM 29 C C23 MYX . . . P 5 17.795 27.706 15.152 1 173.22 ? C23 MYX 607 B 1 
HETATM 30 C C24 MYX . . . P 5 18.581 26.484 15.621 1 171.64 ? C24 MYX 607 B 1 
HETATM 31 C C25 MYX . . . P 5 18.563 28.488 14.091 1 169.74 ? C25 MYX 607 B 1 
HETATM 32 S S1 MYX . . . P 5 6.602 25.393 18.012 1 162.98 ? S1 MYX 607 B 1 
HETATM 33 S S2 MYX . . . P 5 10.085 28.343 16.322 1 182.53 ? S2 MYX 607 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           623 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#