data_5YK1 # _model_server_result.job_id n_VGmrofFQwjZS5RT3p6iA _model_server_result.datetime_utc '2024-11-20 05:32:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yk1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5YK1 # _exptl.entry_id 5YK1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5YK1 _cell.length_a 186.734 _cell.length_b 186.734 _cell.length_c 67.499 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 93.367 -161.716388 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 186.734 0 0 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 33.7495 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 186.734 0 33.7495 6 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 93.367 -161.716388 33.7495 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 353 n n S O2 SO4 doub 354 n n S O3 SO4 sing 355 n n S O4 SO4 sing 356 n n # _atom_sites.entry_id 5YK1 _atom_sites.fract_transf_matrix[1][1] 0.005355 _atom_sites.fract_transf_matrix[1][2] 0.003092 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 445 ANP ANP . C 3 SO4 A 1 502 447 SO4 SO4 . D 3 SO4 A 1 503 448 SO4 SO4 . E 3 SO4 A 1 504 449 SO4 SO4 . F 3 SO4 A 1 505 450 SO4 SO4 . G 3 SO4 A 1 506 451 SO4 SO4 . H 4 GOL A 1 507 452 GOL GOL . I 5 HOH A 1 601 523 HOH HOH . I 5 HOH A 2 602 681 HOH HOH . I 5 HOH A 3 603 581 HOH HOH . I 5 HOH A 4 604 526 HOH HOH . I 5 HOH A 5 605 632 HOH HOH . I 5 HOH A 6 606 492 HOH HOH . I 5 HOH A 7 607 678 HOH HOH . I 5 HOH A 8 608 531 HOH HOH . I 5 HOH A 9 609 633 HOH HOH . I 5 HOH A 10 610 637 HOH HOH . I 5 HOH A 11 611 460 HOH HOH . I 5 HOH A 12 612 662 HOH HOH . I 5 HOH A 13 613 475 HOH HOH . I 5 HOH A 14 614 609 HOH HOH . I 5 HOH A 15 615 661 HOH HOH . I 5 HOH A 16 616 564 HOH HOH . I 5 HOH A 17 617 509 HOH HOH . I 5 HOH A 18 618 507 HOH HOH . I 5 HOH A 19 619 567 HOH HOH . I 5 HOH A 20 620 464 HOH HOH . I 5 HOH A 21 621 680 HOH HOH . I 5 HOH A 22 622 489 HOH HOH . I 5 HOH A 23 623 476 HOH HOH . I 5 HOH A 24 624 488 HOH HOH . I 5 HOH A 25 625 469 HOH HOH . I 5 HOH A 26 626 629 HOH HOH . I 5 HOH A 27 627 677 HOH HOH . I 5 HOH A 28 628 676 HOH HOH . I 5 HOH A 29 629 496 HOH HOH . I 5 HOH A 30 630 472 HOH HOH . I 5 HOH A 31 631 462 HOH HOH . I 5 HOH A 32 632 479 HOH HOH . I 5 HOH A 33 633 537 HOH HOH . I 5 HOH A 34 634 653 HOH HOH . I 5 HOH A 35 635 463 HOH HOH . I 5 HOH A 36 636 474 HOH HOH . I 5 HOH A 37 637 568 HOH HOH . I 5 HOH A 38 638 466 HOH HOH . I 5 HOH A 39 639 615 HOH HOH . I 5 HOH A 40 640 461 HOH HOH . I 5 HOH A 41 641 565 HOH HOH . I 5 HOH A 42 642 498 HOH HOH . I 5 HOH A 43 643 595 HOH HOH . I 5 HOH A 44 644 611 HOH HOH . I 5 HOH A 45 645 591 HOH HOH . I 5 HOH A 46 646 511 HOH HOH . I 5 HOH A 47 647 482 HOH HOH . I 5 HOH A 48 648 542 HOH HOH . I 5 HOH A 49 649 481 HOH HOH . I 5 HOH A 50 650 467 HOH HOH . I 5 HOH A 51 651 520 HOH HOH . I 5 HOH A 52 652 551 HOH HOH . I 5 HOH A 53 653 557 HOH HOH . I 5 HOH A 54 654 524 HOH HOH . I 5 HOH A 55 655 486 HOH HOH . I 5 HOH A 56 656 625 HOH HOH . I 5 HOH A 57 657 664 HOH HOH . I 5 HOH A 58 658 540 HOH HOH . I 5 HOH A 59 659 628 HOH HOH . I 5 HOH A 60 660 502 HOH HOH . I 5 HOH A 61 661 529 HOH HOH . I 5 HOH A 62 662 570 HOH HOH . I 5 HOH A 63 663 651 HOH HOH . I 5 HOH A 64 664 553 HOH HOH . I 5 HOH A 65 665 477 HOH HOH . I 5 HOH A 66 666 554 HOH HOH . I 5 HOH A 67 667 562 HOH HOH . I 5 HOH A 68 668 548 HOH HOH . I 5 HOH A 69 669 487 HOH HOH . I 5 HOH A 70 670 499 HOH HOH . I 5 HOH A 71 671 541 HOH HOH . I 5 HOH A 72 672 508 HOH HOH . I 5 HOH A 73 673 468 HOH HOH . I 5 HOH A 74 674 533 HOH HOH . I 5 HOH A 75 675 543 HOH HOH . I 5 HOH A 76 676 535 HOH HOH . I 5 HOH A 77 677 506 HOH HOH . I 5 HOH A 78 678 485 HOH HOH . I 5 HOH A 79 679 679 HOH HOH . I 5 HOH A 80 680 601 HOH HOH . I 5 HOH A 81 681 470 HOH HOH . I 5 HOH A 82 682 655 HOH HOH . I 5 HOH A 83 683 586 HOH HOH . I 5 HOH A 84 684 635 HOH HOH . I 5 HOH A 85 685 530 HOH HOH . I 5 HOH A 86 686 643 HOH HOH . I 5 HOH A 87 687 552 HOH HOH . I 5 HOH A 88 688 623 HOH HOH . I 5 HOH A 89 689 534 HOH HOH . I 5 HOH A 90 690 503 HOH HOH . I 5 HOH A 91 691 483 HOH HOH . I 5 HOH A 92 692 596 HOH HOH . I 5 HOH A 93 693 480 HOH HOH . I 5 HOH A 94 694 577 HOH HOH . I 5 HOH A 95 695 649 HOH HOH . I 5 HOH A 96 696 668 HOH HOH . I 5 HOH A 97 697 518 HOH HOH . I 5 HOH A 98 698 528 HOH HOH . I 5 HOH A 99 699 606 HOH HOH . I 5 HOH A 100 700 490 HOH HOH . I 5 HOH A 101 701 605 HOH HOH . I 5 HOH A 102 702 547 HOH HOH . I 5 HOH A 103 703 555 HOH HOH . I 5 HOH A 104 704 522 HOH HOH . I 5 HOH A 105 705 561 HOH HOH . I 5 HOH A 106 706 550 HOH HOH . I 5 HOH A 107 707 569 HOH HOH . I 5 HOH A 108 708 504 HOH HOH . I 5 HOH A 109 709 588 HOH HOH . I 5 HOH A 110 710 580 HOH HOH . I 5 HOH A 111 711 494 HOH HOH . I 5 HOH A 112 712 624 HOH HOH . I 5 HOH A 113 713 493 HOH HOH . I 5 HOH A 114 714 560 HOH HOH . I 5 HOH A 115 715 616 HOH HOH . I 5 HOH A 116 716 572 HOH HOH . I 5 HOH A 117 717 585 HOH HOH . I 5 HOH A 118 718 589 HOH HOH . I 5 HOH A 119 719 563 HOH HOH . I 5 HOH A 120 720 544 HOH HOH . I 5 HOH A 121 721 671 HOH HOH . I 5 HOH A 122 722 604 HOH HOH . I 5 HOH A 123 723 545 HOH HOH . I 5 HOH A 124 724 636 HOH HOH . I 5 HOH A 125 725 519 HOH HOH . I 5 HOH A 126 726 669 HOH HOH . I 5 HOH A 127 727 634 HOH HOH . I 5 HOH A 128 728 614 HOH HOH . I 5 HOH A 129 729 471 HOH HOH . I 5 HOH A 130 730 573 HOH HOH . I 5 HOH A 131 731 648 HOH HOH . I 5 HOH A 132 732 574 HOH HOH . I 5 HOH A 133 733 647 HOH HOH . I 5 HOH A 134 734 510 HOH HOH . I 5 HOH A 135 735 491 HOH HOH . I 5 HOH A 136 736 558 HOH HOH . I 5 HOH A 137 737 578 HOH HOH . I 5 HOH A 138 738 538 HOH HOH . I 5 HOH A 139 739 516 HOH HOH . I 5 HOH A 140 740 501 HOH HOH . I 5 HOH A 141 741 500 HOH HOH . I 5 HOH A 142 742 600 HOH HOH . I 5 HOH A 143 743 495 HOH HOH . I 5 HOH A 144 744 619 HOH HOH . I 5 HOH A 145 745 587 HOH HOH . I 5 HOH A 146 746 665 HOH HOH . I 5 HOH A 147 747 590 HOH HOH . I 5 HOH A 148 748 549 HOH HOH . I 5 HOH A 149 749 618 HOH HOH . I 5 HOH A 150 750 478 HOH HOH . I 5 HOH A 151 751 525 HOH HOH . I 5 HOH A 152 752 667 HOH HOH . I 5 HOH A 153 753 657 HOH HOH . I 5 HOH A 154 754 673 HOH HOH . I 5 HOH A 155 755 654 HOH HOH . I 5 HOH A 156 756 597 HOH HOH . I 5 HOH A 157 757 583 HOH HOH . I 5 HOH A 158 758 584 HOH HOH . I 5 HOH A 159 759 631 HOH HOH . I 5 HOH A 160 760 645 HOH HOH . I 5 HOH A 161 761 497 HOH HOH . I 5 HOH A 162 762 620 HOH HOH . I 5 HOH A 163 763 582 HOH HOH . I 5 HOH A 164 764 579 HOH HOH . I 5 HOH A 165 765 663 HOH HOH . I 5 HOH A 166 766 594 HOH HOH . I 5 HOH A 167 767 571 HOH HOH . I 5 HOH A 168 768 556 HOH HOH . I 5 HOH A 169 769 675 HOH HOH . I 5 HOH A 170 770 515 HOH HOH . I 5 HOH A 171 771 644 HOH HOH . I 5 HOH A 172 772 513 HOH HOH . I 5 HOH A 173 773 505 HOH HOH . I 5 HOH A 174 774 627 HOH HOH . I 5 HOH A 175 775 532 HOH HOH . I 5 HOH A 176 776 622 HOH HOH . I 5 HOH A 177 777 607 HOH HOH . I 5 HOH A 178 778 546 HOH HOH . I 5 HOH A 179 779 650 HOH HOH . I 5 HOH A 180 780 539 HOH HOH . I 5 HOH A 181 781 670 HOH HOH . I 5 HOH A 182 782 660 HOH HOH . I 5 HOH A 183 783 672 HOH HOH . I 5 HOH A 184 784 592 HOH HOH . I 5 HOH A 185 785 658 HOH HOH . I 5 HOH A 186 786 638 HOH HOH . I 5 HOH A 187 787 639 HOH HOH . I 5 HOH A 188 788 674 HOH HOH . I 5 HOH A 189 789 599 HOH HOH . I 5 HOH A 190 790 612 HOH HOH . I 5 HOH A 191 791 652 HOH HOH . I 5 HOH A 192 792 682 HOH HOH . I 5 HOH A 193 794 630 HOH HOH . I 5 HOH A 194 795 517 HOH HOH . I 5 HOH A 195 796 626 HOH HOH . I 5 HOH A 196 797 656 HOH HOH . I 5 HOH A 197 799 608 HOH HOH . I 5 HOH A 198 800 646 HOH HOH . I 5 HOH A 199 801 610 HOH HOH . I 5 HOH A 200 802 575 HOH HOH . I 5 HOH A 201 803 617 HOH HOH . I 5 HOH A 202 804 521 HOH HOH . I 5 HOH A 203 805 621 HOH HOH . I 5 HOH A 204 806 514 HOH HOH . I 5 HOH A 205 807 593 HOH HOH . I 5 HOH A 206 808 666 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 3 61.97 -8.073 33.635 1 126.86 ? S SO4 505 A 1 HETATM 2 O O1 SO4 . . . F 3 63.014 -7.436 32.838 1 128.15 ? O1 SO4 505 A 1 HETATM 3 O O2 SO4 . . . F 3 61.772 -9.442 33.167 1 126.22 ? O2 SO4 505 A 1 HETATM 4 O O3 SO4 . . . F 3 60.723 -7.327 33.496 1 125.75 ? O3 SO4 505 A 1 HETATM 5 O O4 SO4 . . . F 3 62.376 -8.087 35.038 1 126.1 ? O4 SO4 505 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #