data_5YK2 # _model_server_result.job_id Dg2rEu2KtOSLxhd4kUizag _model_server_result.datetime_utc '2024-11-20 03:19:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5YK2 # _exptl.entry_id 5YK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 733.927 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ERYTHROMYCIN A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5YK2 _cell.length_a 187.238 _cell.length_b 187.238 _cell.length_c 67.205 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H67 N O13' _chem_comp.formula_weight 733.927 _chem_comp.id ERY _chem_comp.mon_nstd_flag . _chem_comp.name 'ERYTHROMYCIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 ERY sing 83 n n C10 C9 ERY sing 84 n n C10 C34 ERY sing 85 n n C10 H10 ERY sing 86 n n C11 C12 ERY sing 87 n n C11 O12 ERY sing 88 n n C11 H11 ERY sing 89 n n C12 C13 ERY sing 90 n n C12 C35 ERY sing 91 n n C12 O13 ERY sing 92 n n C13 O2 ERY sing 93 n n C13 C36 ERY sing 94 n n C13 H13 ERY sing 95 n n O2 C1 ERY sing 96 n n C2 C3 ERY sing 97 n n C2 C1 ERY sing 98 n n C2 C30 ERY sing 99 n n C2 H2 ERY sing 100 n n C3 C4 ERY sing 101 n n C3 O3 ERY sing 102 n n C3 H3 ERY sing 103 n n C4 C5 ERY sing 104 n n C4 C31 ERY sing 105 n n C4 H4 ERY sing 106 n n C5 C6 ERY sing 107 n n C5 O7 ERY sing 108 n n C5 H5 ERY sing 109 n n C6 C7 ERY sing 110 n n C6 C32 ERY sing 111 n n C6 O10 ERY sing 112 n n C7 C8 ERY sing 113 n n C7 H71 ERY sing 114 n n C7 H72 ERY sing 115 n n C8 C9 ERY sing 116 n n C8 C33 ERY sing 117 n n C8 H8 ERY sing 118 n n C9 O11 ERY doub 119 n n C1 O1 ERY doub 120 n n O3 C14 ERY sing 121 n n O7 C22 ERY sing 122 n n C34 H341 ERY sing 123 n n C34 H342 ERY sing 124 n n C34 H343 ERY sing 125 n n C33 H331 ERY sing 126 n n C33 H332 ERY sing 127 n n C33 H333 ERY sing 128 n n C35 H351 ERY sing 129 n n C35 H352 ERY sing 130 n n C35 H353 ERY sing 131 n n O12 HO12 ERY sing 132 n n O13 HO13 ERY sing 133 n n C36 C37 ERY sing 134 n n C36 H361 ERY sing 135 n n C36 H362 ERY sing 136 n n C30 H301 ERY sing 137 n n C30 H302 ERY sing 138 n n C30 H303 ERY sing 139 n n C32 H321 ERY sing 140 n n C32 H322 ERY sing 141 n n C32 H323 ERY sing 142 n n O10 HO10 ERY sing 143 n n C22 C23 ERY sing 144 n n C22 O9 ERY sing 145 n n C22 H22 ERY sing 146 n n C23 C24 ERY sing 147 n n C23 O8 ERY sing 148 n n C23 H23 ERY sing 149 n n C24 C25 ERY sing 150 n n C24 N1 ERY sing 151 n n C24 H24 ERY sing 152 n n C25 C26 ERY sing 153 n n C25 H251 ERY sing 154 n n C25 H252 ERY sing 155 n n C26 O9 ERY sing 156 n n C26 C27 ERY sing 157 n n C26 H26 ERY sing 158 n n N1 C28 ERY sing 159 n n N1 C29 ERY sing 160 n n C27 H271 ERY sing 161 n n C27 H272 ERY sing 162 n n C27 H273 ERY sing 163 n n O8 HO8 ERY sing 164 n n C28 H281 ERY sing 165 n n C28 H282 ERY sing 166 n n C28 H283 ERY sing 167 n n C14 C15 ERY sing 168 n n C14 O4 ERY sing 169 n n C14 H14 ERY sing 170 n n C15 C16 ERY sing 171 n n C15 H151 ERY sing 172 n n C15 H152 ERY sing 173 n n C16 C17 ERY sing 174 n n C16 O5 ERY sing 175 n n C16 C19 ERY sing 176 n n C17 C18 ERY sing 177 n n C17 O6 ERY sing 178 n n C17 H17 ERY sing 179 n n C18 O4 ERY sing 180 n n C18 C21 ERY sing 181 n n C18 H18 ERY sing 182 n n O5 C20 ERY sing 183 n n O6 HO6 ERY sing 184 n n C20 H201 ERY sing 185 n n C20 H202 ERY sing 186 n n C20 H203 ERY sing 187 n n C29 H291 ERY sing 188 n n C29 H292 ERY sing 189 n n C29 H293 ERY sing 190 n n C21 H211 ERY sing 191 n n C21 H212 ERY sing 192 n n C21 H213 ERY sing 193 n n C37 H371 ERY sing 194 n n C37 H372 ERY sing 195 n n C37 H373 ERY sing 196 n n C31 H311 ERY sing 197 n n C31 H312 ERY sing 198 n n C31 H313 ERY sing 199 n n C19 H191 ERY sing 200 n n C19 H192 ERY sing 201 n n C19 H193 ERY sing 202 n n # _atom_sites.entry_id 5YK2 _atom_sites.fract_transf_matrix[1][1] 0.005341 _atom_sites.fract_transf_matrix[1][2] 0.003084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ERY _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 451 _pdbx_nonpoly_scheme.pdb_mon_id ERY _pdbx_nonpoly_scheme.auth_mon_id ERY _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 ERY . . . B 2 -77.158 25.087 15.508 1 80.74 ? C10 ERY 501 A 1 HETATM 2 C C11 ERY . . . B 2 -77.068 25.91 14.212 1 81.45 ? C11 ERY 501 A 1 HETATM 3 C C12 ERY . . . B 2 -78.246 25.779 13.223 1 78.5 ? C12 ERY 501 A 1 HETATM 4 C C13 ERY . . . B 2 -78.739 27.189 12.866 1 85.97 ? C13 ERY 501 A 1 HETATM 5 O O2 ERY . . . B 2 -79.724 27.586 13.867 1 90.02 ? O2 ERY 501 A 1 HETATM 6 C C2 ERY . . . B 2 -81.262 29.195 14.649 1 82.07 ? C2 ERY 501 A 1 HETATM 7 C C3 ERY . . . B 2 -81.216 29.048 16.199 1 76.28 ? C3 ERY 501 A 1 HETATM 8 C C4 ERY . . . B 2 -80.9 27.59 16.57 1 74.6 ? C4 ERY 501 A 1 HETATM 9 C C5 ERY . . . B 2 -80.538 27.429 18.07 1 53.65 ? C5 ERY 501 A 1 HETATM 10 C C6 ERY . . . B 2 -79.025 27.248 18.283 1 65.3 ? C6 ERY 501 A 1 HETATM 11 C C7 ERY . . . B 2 -78.568 25.811 18.035 1 67.77 ? C7 ERY 501 A 1 HETATM 12 C C8 ERY . . . B 2 -77.046 25.625 18.058 1 79.54 ? C8 ERY 501 A 1 HETATM 13 C C9 ERY . . . B 2 -76.408 25.692 16.679 1 86.05 ? C9 ERY 501 A 1 HETATM 14 O O11 ERY . . . B 2 -75.348 26.247 16.511 1 87.79 ? O11 ERY 501 A 1 HETATM 15 C C1 ERY . . . B 2 -79.904 28.882 14.061 1 81.75 ? C1 ERY 501 A 1 HETATM 16 O O1 ERY . . . B 2 -79.091 29.706 13.779 1 78.42 ? O1 ERY 501 A 1 HETATM 17 O O3 ERY . . . B 2 -82.455 29.418 16.817 1 78.29 ? O3 ERY 501 A 1 HETATM 18 O O7 ERY . . . B 2 -81.156 26.262 18.635 1 62.5 ? O7 ERY 501 A 1 HETATM 19 C C34 ERY . . . B 2 -76.693 23.652 15.377 1 84.59 ? C34 ERY 501 A 1 HETATM 20 C C33 ERY . . . B 2 -76.751 24.259 18.659 1 63.18 ? C33 ERY 501 A 1 HETATM 21 C C35 ERY . . . B 2 -79.374 25.019 13.81 1 70.71 ? C35 ERY 501 A 1 HETATM 22 O O12 ERY . . . B 2 -75.914 25.558 13.482 1 79.26 ? O12 ERY 501 A 1 HETATM 23 O O13 ERY . . . B 2 -77.842 25.413 11.865 1 71.21 ? O13 ERY 501 A 1 HETATM 24 C C36 ERY . . . B 2 -79.42 27.287 11.513 1 75.54 ? C36 ERY 501 A 1 HETATM 25 C C30 ERY . . . B 2 -81.678 30.587 14.206 1 73.05 ? C30 ERY 501 A 1 HETATM 26 C C32 ERY . . . B 2 -78.637 27.708 19.678 1 68.53 ? C32 ERY 501 A 1 HETATM 27 O O10 ERY . . . B 2 -78.341 28.047 17.314 1 67.19 ? O10 ERY 501 A 1 HETATM 28 C C22 ERY . . . B 2 -82.123 26.431 19.627 1 63.76 ? C22 ERY 501 A 1 HETATM 29 C C23 ERY . . . B 2 -82.748 25.078 19.916 1 64.39 ? C23 ERY 501 A 1 HETATM 30 C C24 ERY . . . B 2 -83.759 25.259 21.03 1 74.48 ? C24 ERY 501 A 1 HETATM 31 C C25 ERY . . . B 2 -83.072 25.854 22.254 1 69.05 ? C25 ERY 501 A 1 HETATM 32 C C26 ERY . . . B 2 -82.428 27.162 21.872 1 62.18 ? C26 ERY 501 A 1 HETATM 33 O O9 ERY . . . B 2 -81.512 26.94 20.786 1 69.52 ? O9 ERY 501 A 1 HETATM 34 N N1 ERY . . . B 2 -84.582 24.058 21.214 1 83.19 ? N1 ERY 501 A 1 HETATM 35 C C27 ERY . . . B 2 -81.636 27.781 22.987 1 45.74 ? C27 ERY 501 A 1 HETATM 36 O O8 ERY . . . B 2 -83.399 24.598 18.754 1 52.79 ? O8 ERY 501 A 1 HETATM 37 C C28 ERY . . . B 2 -85.194 23.971 22.533 1 70.18 ? C28 ERY 501 A 1 HETATM 38 C C14 ERY . . . B 2 -82.543 30.729 17.321 1 67.54 ? C14 ERY 501 A 1 HETATM 39 C C15 ERY . . . B 2 -83.994 31.132 17.404 1 55.66 ? C15 ERY 501 A 1 HETATM 40 C C16 ERY . . . B 2 -84.743 30.527 18.565 1 59.61 ? C16 ERY 501 A 1 HETATM 41 C C17 ERY . . . B 2 -83.933 30.779 19.826 1 66.43 ? C17 ERY 501 A 1 HETATM 42 C C18 ERY . . . B 2 -82.506 30.293 19.688 1 67.58 ? C18 ERY 501 A 1 HETATM 43 O O4 ERY . . . B 2 -81.87 30.896 18.551 1 67 ? O4 ERY 501 A 1 HETATM 44 O O5 ERY . . . B 2 -84.836 29.099 18.49 1 65.37 ? O5 ERY 501 A 1 HETATM 45 O O6 ERY . . . B 2 -84.519 30.118 20.925 1 70.22 ? O6 ERY 501 A 1 HETATM 46 C C20 ERY . . . B 2 -85.764 28.544 17.568 1 50.65 ? C20 ERY 501 A 1 HETATM 47 C C29 ERY . . . B 2 -85.596 23.931 20.18 1 86.24 ? C29 ERY 501 A 1 HETATM 48 C C21 ERY . . . B 2 -81.658 30.693 20.865 1 65.06 ? C21 ERY 501 A 1 HETATM 49 C C37 ERY . . . B 2 -80.67 26.571 11.212 1 54.86 ? C37 ERY 501 A 1 HETATM 50 C C31 ERY . . . B 2 -82.003 26.648 16.098 1 64.59 ? C31 ERY 501 A 1 HETATM 51 C C19 ERY . . . B 2 -86.108 31.149 18.676 1 52.33 ? C19 ERY 501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 51 #