data_5YLT # _model_server_result.job_id pNeKjiI_KnSdlNbsD3QWMQ _model_server_result.datetime_utc '2024-11-05 01:22:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ylt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5YLT # _exptl.entry_id 5YLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.398 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1-methylpiperidin-4-ylidene)tricyclo[9.4.0.0^{3,8}]pentadeca-1(11),3(8),4,6,9,12,14-heptaen-6-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YLT _cell.length_a 110.176 _cell.length_b 34.963 _cell.length_c 67.872 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 16 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 119 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 16 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 119 _struct_conn.ptnr2_symmetry 2_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id B _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.039 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H21 N O' _chem_comp.formula_weight 303.398 _chem_comp.id C7N _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1-methylpiperidin-4-ylidene)tricyclo[9.4.0.0^{3,8}]pentadeca-1(11),3(8),4,6,9,12,14-heptaen-6-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 N16 C7N sing 70 n n C3 C4 C7N doub 71 n n C3 C2 C7N sing 72 n n C4 C5 C7N sing 73 n n C15 N16 C7N sing 74 n n C15 C14 C7N sing 75 n n C1 C2 C7N sing 76 n y C1 C23 C7N doub 77 n y C2 C20 C7N doub 78 n y N16 C18 C7N sing 79 n n C18 C19 C7N sing 80 n n C23 C22 C7N sing 81 n y C14 C13 C7N sing 82 n n C5 C6 C7N sing 83 n y C5 C11 C7N doub 84 n y C20 C12 C7N sing 85 n n C20 C21 C7N sing 86 n y C13 C12 C7N doub 87 n n C13 C19 C7N sing 88 n n C12 C11 C7N sing 89 n n C6 C7 C7N doub 90 n y C22 C21 C7N doub 91 n y C11 C10 C7N sing 92 n y C7 O8 C7N sing 93 n n C7 C9 C7N sing 94 n y C10 C9 C7N doub 95 n y C1 H1 C7N sing 96 n n C3 H2 C7N sing 97 n n C4 H3 C7N sing 98 n n C6 H4 C7N sing 99 n n C9 H5 C7N sing 100 n n C10 H6 C7N sing 101 n n C14 H7 C7N sing 102 n n C14 H8 C7N sing 103 n n C15 H9 C7N sing 104 n n C15 H10 C7N sing 105 n n C17 H11 C7N sing 106 n n C17 H12 C7N sing 107 n n C17 H13 C7N sing 108 n n C18 H14 C7N sing 109 n n C18 H15 C7N sing 110 n n C19 H16 C7N sing 111 n n C19 H17 C7N sing 112 n n C21 H18 C7N sing 113 n n C22 H19 C7N sing 114 n n C23 H20 C7N sing 115 n n O8 H22 C7N sing 116 n n # _atom_sites.entry_id 5YLT _atom_sites.fract_transf_matrix[1][1] 0.009076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SFG A 1 401 401 SFG SFG . C 3 C7N A 1 402 402 C7N XOX . D 4 GOL A 1 403 501 GOL GOL . E 4 GOL A 1 404 503 GOL GOL . F 4 GOL A 1 405 504 GOL GOL . G 5 HOH A 1 501 98 HOH HOH . G 5 HOH A 2 502 166 HOH HOH . G 5 HOH A 3 503 155 HOH HOH . G 5 HOH A 4 504 77 HOH HOH . G 5 HOH A 5 505 146 HOH HOH . G 5 HOH A 6 506 203 HOH HOH . G 5 HOH A 7 507 119 HOH HOH . G 5 HOH A 8 508 105 HOH HOH . G 5 HOH A 9 509 52 HOH HOH . G 5 HOH A 10 510 130 HOH HOH . G 5 HOH A 11 511 75 HOH HOH . G 5 HOH A 12 512 53 HOH HOH . G 5 HOH A 13 513 196 HOH HOH . G 5 HOH A 14 514 154 HOH HOH . G 5 HOH A 15 515 93 HOH HOH . G 5 HOH A 16 516 140 HOH HOH . G 5 HOH A 17 517 44 HOH HOH . G 5 HOH A 18 518 63 HOH HOH . G 5 HOH A 19 519 82 HOH HOH . G 5 HOH A 20 520 17 HOH HOH . G 5 HOH A 21 521 9 HOH HOH . G 5 HOH A 22 522 158 HOH HOH . G 5 HOH A 23 523 8 HOH HOH . G 5 HOH A 24 524 20 HOH HOH . G 5 HOH A 25 525 49 HOH HOH . G 5 HOH A 26 526 47 HOH HOH . G 5 HOH A 27 527 124 HOH HOH . G 5 HOH A 28 528 1 HOH HOH . G 5 HOH A 29 529 62 HOH HOH . G 5 HOH A 30 530 10 HOH HOH . G 5 HOH A 31 531 116 HOH HOH . G 5 HOH A 32 532 11 HOH HOH . G 5 HOH A 33 533 58 HOH HOH . G 5 HOH A 34 534 153 HOH HOH . G 5 HOH A 35 535 14 HOH HOH . G 5 HOH A 36 536 209 HOH HOH . G 5 HOH A 37 537 40 HOH HOH . G 5 HOH A 38 538 106 HOH HOH . G 5 HOH A 39 539 7 HOH HOH . G 5 HOH A 40 540 24 HOH HOH . G 5 HOH A 41 541 39 HOH HOH . G 5 HOH A 42 542 147 HOH HOH . G 5 HOH A 43 543 57 HOH HOH . G 5 HOH A 44 544 137 HOH HOH . G 5 HOH A 45 545 16 HOH HOH . G 5 HOH A 46 546 100 HOH HOH . G 5 HOH A 47 547 142 HOH HOH . G 5 HOH A 48 548 41 HOH HOH . G 5 HOH A 49 549 54 HOH HOH . G 5 HOH A 50 550 136 HOH HOH . G 5 HOH A 51 551 55 HOH HOH . G 5 HOH A 52 552 169 HOH HOH . G 5 HOH A 53 553 30 HOH HOH . G 5 HOH A 54 554 74 HOH HOH . G 5 HOH A 55 555 6 HOH HOH . G 5 HOH A 56 556 179 HOH HOH . G 5 HOH A 57 557 70 HOH HOH . G 5 HOH A 58 558 50 HOH HOH . G 5 HOH A 59 559 80 HOH HOH . G 5 HOH A 60 560 69 HOH HOH . G 5 HOH A 61 561 21 HOH HOH . G 5 HOH A 62 562 163 HOH HOH . G 5 HOH A 63 563 13 HOH HOH . G 5 HOH A 64 564 51 HOH HOH . G 5 HOH A 65 565 37 HOH HOH . G 5 HOH A 66 566 36 HOH HOH . G 5 HOH A 67 567 22 HOH HOH . G 5 HOH A 68 568 45 HOH HOH . G 5 HOH A 69 569 61 HOH HOH . G 5 HOH A 70 570 31 HOH HOH . G 5 HOH A 71 571 73 HOH HOH . G 5 HOH A 72 572 92 HOH HOH . G 5 HOH A 73 573 174 HOH HOH . G 5 HOH A 74 574 151 HOH HOH . G 5 HOH A 75 575 2 HOH HOH . G 5 HOH A 76 576 18 HOH HOH . G 5 HOH A 77 577 96 HOH HOH . G 5 HOH A 78 578 112 HOH HOH . G 5 HOH A 79 579 12 HOH HOH . G 5 HOH A 80 580 56 HOH HOH . G 5 HOH A 81 581 48 HOH HOH . G 5 HOH A 82 582 79 HOH HOH . G 5 HOH A 83 583 26 HOH HOH . G 5 HOH A 84 584 3 HOH HOH . G 5 HOH A 85 585 4 HOH HOH . G 5 HOH A 86 586 15 HOH HOH . G 5 HOH A 87 587 176 HOH HOH . G 5 HOH A 88 588 125 HOH HOH . G 5 HOH A 89 589 33 HOH HOH . G 5 HOH A 90 590 208 HOH HOH . G 5 HOH A 91 591 85 HOH HOH . G 5 HOH A 92 592 23 HOH HOH . G 5 HOH A 93 593 71 HOH HOH . G 5 HOH A 94 594 95 HOH HOH . G 5 HOH A 95 595 64 HOH HOH . G 5 HOH A 96 596 35 HOH HOH . G 5 HOH A 97 597 34 HOH HOH . G 5 HOH A 98 598 68 HOH HOH . G 5 HOH A 99 599 167 HOH HOH . G 5 HOH A 100 600 88 HOH HOH . G 5 HOH A 101 601 109 HOH HOH . G 5 HOH A 102 602 76 HOH HOH . G 5 HOH A 103 603 91 HOH HOH . G 5 HOH A 104 604 94 HOH HOH . G 5 HOH A 105 605 5 HOH HOH . G 5 HOH A 106 606 132 HOH HOH . G 5 HOH A 107 607 160 HOH HOH . G 5 HOH A 108 608 84 HOH HOH . G 5 HOH A 109 609 89 HOH HOH . G 5 HOH A 110 610 78 HOH HOH . G 5 HOH A 111 611 156 HOH HOH . G 5 HOH A 112 612 192 HOH HOH . G 5 HOH A 113 613 81 HOH HOH . G 5 HOH A 114 614 32 HOH HOH . G 5 HOH A 115 615 87 HOH HOH . G 5 HOH A 116 616 138 HOH HOH . G 5 HOH A 117 617 43 HOH HOH . G 5 HOH A 118 618 170 HOH HOH . G 5 HOH A 119 619 99 HOH HOH . G 5 HOH A 120 620 122 HOH HOH . G 5 HOH A 121 621 19 HOH HOH . G 5 HOH A 122 622 25 HOH HOH . G 5 HOH A 123 623 101 HOH HOH . G 5 HOH A 124 624 148 HOH HOH . G 5 HOH A 125 625 172 HOH HOH . G 5 HOH A 126 626 83 HOH HOH . G 5 HOH A 127 627 183 HOH HOH . G 5 HOH A 128 628 60 HOH HOH . G 5 HOH A 129 629 190 HOH HOH . G 5 HOH A 130 630 150 HOH HOH . G 5 HOH A 131 631 59 HOH HOH . G 5 HOH A 132 632 199 HOH HOH . G 5 HOH A 133 633 161 HOH HOH . G 5 HOH A 134 634 115 HOH HOH . G 5 HOH A 135 635 27 HOH HOH . G 5 HOH A 136 636 29 HOH HOH . G 5 HOH A 137 637 149 HOH HOH . G 5 HOH A 138 638 108 HOH HOH . G 5 HOH A 139 639 145 HOH HOH . G 5 HOH A 140 640 159 HOH HOH . G 5 HOH A 141 641 90 HOH HOH . G 5 HOH A 142 642 118 HOH HOH . G 5 HOH A 143 643 191 HOH HOH . G 5 HOH A 144 644 104 HOH HOH . G 5 HOH A 145 645 66 HOH HOH . G 5 HOH A 146 646 173 HOH HOH . G 5 HOH A 147 647 46 HOH HOH . G 5 HOH A 148 648 103 HOH HOH . G 5 HOH A 149 649 144 HOH HOH . G 5 HOH A 150 650 28 HOH HOH . G 5 HOH A 151 651 110 HOH HOH . G 5 HOH A 152 652 162 HOH HOH . G 5 HOH A 153 653 152 HOH HOH . G 5 HOH A 154 654 189 HOH HOH . G 5 HOH A 155 655 194 HOH HOH . G 5 HOH A 156 656 86 HOH HOH . G 5 HOH A 157 657 184 HOH HOH . G 5 HOH A 158 658 187 HOH HOH . G 5 HOH A 159 659 195 HOH HOH . G 5 HOH A 160 660 198 HOH HOH . G 5 HOH A 161 661 205 HOH HOH . G 5 HOH A 162 662 121 HOH HOH . G 5 HOH A 163 663 165 HOH HOH . G 5 HOH A 164 664 120 HOH HOH . G 5 HOH A 165 665 42 HOH HOH . G 5 HOH A 166 666 127 HOH HOH . G 5 HOH A 167 667 182 HOH HOH . G 5 HOH A 168 668 117 HOH HOH . G 5 HOH A 169 669 185 HOH HOH . G 5 HOH A 170 670 178 HOH HOH . G 5 HOH A 171 671 168 HOH HOH . G 5 HOH A 172 672 210 HOH HOH . G 5 HOH A 173 673 181 HOH HOH . G 5 HOH A 174 674 186 HOH HOH . G 5 HOH A 175 675 111 HOH HOH . G 5 HOH A 176 676 126 HOH HOH . G 5 HOH A 177 677 97 HOH HOH . G 5 HOH A 178 678 114 HOH HOH . G 5 HOH A 179 679 175 HOH HOH . G 5 HOH A 180 680 38 HOH HOH . G 5 HOH A 181 681 200 HOH HOH . G 5 HOH A 182 682 72 HOH HOH . G 5 HOH A 183 683 102 HOH HOH . G 5 HOH A 184 684 67 HOH HOH . G 5 HOH A 185 685 139 HOH HOH . G 5 HOH A 186 686 113 HOH HOH . G 5 HOH A 187 687 207 HOH HOH . G 5 HOH A 188 688 171 HOH HOH . G 5 HOH A 189 689 177 HOH HOH . G 5 HOH A 190 690 65 HOH HOH . G 5 HOH A 191 691 143 HOH HOH . G 5 HOH A 192 692 135 HOH HOH . G 5 HOH A 193 693 129 HOH HOH . G 5 HOH A 194 694 123 HOH HOH . G 5 HOH A 195 695 188 HOH HOH . G 5 HOH A 196 696 128 HOH HOH . G 5 HOH A 197 697 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C7N . . . C 3 -44.561 -0.079 -14.554 1 26.72 ? C1 C7N 402 A 1 HETATM 2 C C2 C7N . . . C 3 -43.421 -0.919 -14.381 1 23.11 ? C2 C7N 402 A 1 HETATM 3 C C3 C7N . . . C 3 -43.216 -2.155 -15.169 1 21.78 ? C3 C7N 402 A 1 HETATM 4 C C4 C7N . . . C 3 -42.703 -3.43 -14.777 1 21.05 ? C4 C7N 402 A 1 HETATM 5 C C5 C7N . . . C 3 -41.974 -3.816 -13.513 1 27.4 ? C5 C7N 402 A 1 HETATM 6 C C6 C7N . . . C 3 -41.96 -5.179 -13.049 1 27.4 ? C6 C7N 402 A 1 HETATM 7 C C7 C7N . . . C 3 -41.319 -5.662 -11.895 1 29.78 ? C7 C7N 402 A 1 HETATM 8 C C9 C7N . . . C 3 -40.611 -4.704 -11.11 1 33.03 ? C9 C7N 402 A 1 HETATM 9 C C10 C7N . . . C 3 -40.621 -3.387 -11.536 1 27.69 ? C10 C7N 402 A 1 HETATM 10 C C11 C7N . . . C 3 -41.256 -2.849 -12.717 1 21.94 ? C11 C7N 402 A 1 HETATM 11 C C12 C7N . . . C 3 -41.198 -1.365 -13.148 1 22.33 ? C12 C7N 402 A 1 HETATM 12 C C13 C7N . . . C 3 -39.964 -0.77 -13.392 1 21.28 ? C13 C7N 402 A 1 HETATM 13 C C14 C7N . . . C 3 -39.794 0.749 -13.795 1 21.14 ? C14 C7N 402 A 1 HETATM 14 C C15 C7N . . . C 3 -38.558 0.937 -14.716 1 19.97 ? C15 C7N 402 A 1 HETATM 15 C C17 C7N . . . C 3 -36.268 0.484 -15.217 1 17.47 ? C17 C7N 402 A 1 HETATM 16 C C18 C7N . . . C 3 -37.49 -1.081 -13.947 1 23.12 ? C18 C7N 402 A 1 HETATM 17 C C19 C7N . . . C 3 -38.613 -1.371 -12.945 1 21.97 ? C19 C7N 402 A 1 HETATM 18 C C20 C7N . . . C 3 -42.44 -0.529 -13.395 1 20.64 ? C20 C7N 402 A 1 HETATM 19 C C21 C7N . . . C 3 -42.752 0.665 -12.671 1 25.18 ? C21 C7N 402 A 1 HETATM 20 C C22 C7N . . . C 3 -43.859 1.469 -12.859 1 25.13 ? C22 C7N 402 A 1 HETATM 21 C C23 C7N . . . C 3 -44.803 1.088 -13.834 1 25.42 ? C23 C7N 402 A 1 HETATM 22 N N16 C7N . . . C 3 -37.377 0.325 -14.19 1 19.83 ? N16 C7N 402 A 1 HETATM 23 O O8 C7N . . . C 3 -41.318 -6.976 -11.476 1 34.7 ? O8 C7N 402 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #