data_5YLT
#
_model_server_result.job_id            j0ho1JqKHdBVFAqZEe-sOA 
_model_server_result.datetime_utc      '2024-11-05 01:23:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ylt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5YLT 
#
_exptl.entry_id    5YLT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YLT 
_cell.length_a            110.176 
_cell.length_b            34.963 
_cell.length_c            67.872 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YLT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             16 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              119 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             16 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              119 
_struct_conn.ptnr2_symmetry                 2_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        B 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        B 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.039 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 176 n n 
C1 C2 GOL sing 177 n n 
C1 H11 GOL sing 178 n n 
C1 H12 GOL sing 179 n n 
O1 HO1 GOL sing 180 n n 
C2 O2 GOL sing 181 n n 
C2 C3 GOL sing 182 n n 
C2 H2 GOL sing 183 n n 
O2 HO2 GOL sing 184 n n 
C3 O3 GOL sing 185 n n 
C3 H31 GOL sing 186 n n 
C3 H32 GOL sing 187 n n 
O3 HO3 GOL sing 188 n n 
#
_atom_sites.entry_id                     5YLT 
_atom_sites.fract_transf_matrix[1][1]    0.009076 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028602 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014734 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SFG A 1 401 401 SFG SFG . 
C 3 C7N A 1 402 402 C7N XOX . 
D 4 GOL A 1 403 501 GOL GOL . 
E 4 GOL A 1 404 503 GOL GOL . 
F 4 GOL A 1 405 504 GOL GOL . 
G 5 HOH A 1 501 98 HOH HOH . 
G 5 HOH A 2 502 166 HOH HOH . 
G 5 HOH A 3 503 155 HOH HOH . 
G 5 HOH A 4 504 77 HOH HOH . 
G 5 HOH A 5 505 146 HOH HOH . 
G 5 HOH A 6 506 203 HOH HOH . 
G 5 HOH A 7 507 119 HOH HOH . 
G 5 HOH A 8 508 105 HOH HOH . 
G 5 HOH A 9 509 52 HOH HOH . 
G 5 HOH A 10 510 130 HOH HOH . 
G 5 HOH A 11 511 75 HOH HOH . 
G 5 HOH A 12 512 53 HOH HOH . 
G 5 HOH A 13 513 196 HOH HOH . 
G 5 HOH A 14 514 154 HOH HOH . 
G 5 HOH A 15 515 93 HOH HOH . 
G 5 HOH A 16 516 140 HOH HOH . 
G 5 HOH A 17 517 44 HOH HOH . 
G 5 HOH A 18 518 63 HOH HOH . 
G 5 HOH A 19 519 82 HOH HOH . 
G 5 HOH A 20 520 17 HOH HOH . 
G 5 HOH A 21 521 9 HOH HOH . 
G 5 HOH A 22 522 158 HOH HOH . 
G 5 HOH A 23 523 8 HOH HOH . 
G 5 HOH A 24 524 20 HOH HOH . 
G 5 HOH A 25 525 49 HOH HOH . 
G 5 HOH A 26 526 47 HOH HOH . 
G 5 HOH A 27 527 124 HOH HOH . 
G 5 HOH A 28 528 1 HOH HOH . 
G 5 HOH A 29 529 62 HOH HOH . 
G 5 HOH A 30 530 10 HOH HOH . 
G 5 HOH A 31 531 116 HOH HOH . 
G 5 HOH A 32 532 11 HOH HOH . 
G 5 HOH A 33 533 58 HOH HOH . 
G 5 HOH A 34 534 153 HOH HOH . 
G 5 HOH A 35 535 14 HOH HOH . 
G 5 HOH A 36 536 209 HOH HOH . 
G 5 HOH A 37 537 40 HOH HOH . 
G 5 HOH A 38 538 106 HOH HOH . 
G 5 HOH A 39 539 7 HOH HOH . 
G 5 HOH A 40 540 24 HOH HOH . 
G 5 HOH A 41 541 39 HOH HOH . 
G 5 HOH A 42 542 147 HOH HOH . 
G 5 HOH A 43 543 57 HOH HOH . 
G 5 HOH A 44 544 137 HOH HOH . 
G 5 HOH A 45 545 16 HOH HOH . 
G 5 HOH A 46 546 100 HOH HOH . 
G 5 HOH A 47 547 142 HOH HOH . 
G 5 HOH A 48 548 41 HOH HOH . 
G 5 HOH A 49 549 54 HOH HOH . 
G 5 HOH A 50 550 136 HOH HOH . 
G 5 HOH A 51 551 55 HOH HOH . 
G 5 HOH A 52 552 169 HOH HOH . 
G 5 HOH A 53 553 30 HOH HOH . 
G 5 HOH A 54 554 74 HOH HOH . 
G 5 HOH A 55 555 6 HOH HOH . 
G 5 HOH A 56 556 179 HOH HOH . 
G 5 HOH A 57 557 70 HOH HOH . 
G 5 HOH A 58 558 50 HOH HOH . 
G 5 HOH A 59 559 80 HOH HOH . 
G 5 HOH A 60 560 69 HOH HOH . 
G 5 HOH A 61 561 21 HOH HOH . 
G 5 HOH A 62 562 163 HOH HOH . 
G 5 HOH A 63 563 13 HOH HOH . 
G 5 HOH A 64 564 51 HOH HOH . 
G 5 HOH A 65 565 37 HOH HOH . 
G 5 HOH A 66 566 36 HOH HOH . 
G 5 HOH A 67 567 22 HOH HOH . 
G 5 HOH A 68 568 45 HOH HOH . 
G 5 HOH A 69 569 61 HOH HOH . 
G 5 HOH A 70 570 31 HOH HOH . 
G 5 HOH A 71 571 73 HOH HOH . 
G 5 HOH A 72 572 92 HOH HOH . 
G 5 HOH A 73 573 174 HOH HOH . 
G 5 HOH A 74 574 151 HOH HOH . 
G 5 HOH A 75 575 2 HOH HOH . 
G 5 HOH A 76 576 18 HOH HOH . 
G 5 HOH A 77 577 96 HOH HOH . 
G 5 HOH A 78 578 112 HOH HOH . 
G 5 HOH A 79 579 12 HOH HOH . 
G 5 HOH A 80 580 56 HOH HOH . 
G 5 HOH A 81 581 48 HOH HOH . 
G 5 HOH A 82 582 79 HOH HOH . 
G 5 HOH A 83 583 26 HOH HOH . 
G 5 HOH A 84 584 3 HOH HOH . 
G 5 HOH A 85 585 4 HOH HOH . 
G 5 HOH A 86 586 15 HOH HOH . 
G 5 HOH A 87 587 176 HOH HOH . 
G 5 HOH A 88 588 125 HOH HOH . 
G 5 HOH A 89 589 33 HOH HOH . 
G 5 HOH A 90 590 208 HOH HOH . 
G 5 HOH A 91 591 85 HOH HOH . 
G 5 HOH A 92 592 23 HOH HOH . 
G 5 HOH A 93 593 71 HOH HOH . 
G 5 HOH A 94 594 95 HOH HOH . 
G 5 HOH A 95 595 64 HOH HOH . 
G 5 HOH A 96 596 35 HOH HOH . 
G 5 HOH A 97 597 34 HOH HOH . 
G 5 HOH A 98 598 68 HOH HOH . 
G 5 HOH A 99 599 167 HOH HOH . 
G 5 HOH A 100 600 88 HOH HOH . 
G 5 HOH A 101 601 109 HOH HOH . 
G 5 HOH A 102 602 76 HOH HOH . 
G 5 HOH A 103 603 91 HOH HOH . 
G 5 HOH A 104 604 94 HOH HOH . 
G 5 HOH A 105 605 5 HOH HOH . 
G 5 HOH A 106 606 132 HOH HOH . 
G 5 HOH A 107 607 160 HOH HOH . 
G 5 HOH A 108 608 84 HOH HOH . 
G 5 HOH A 109 609 89 HOH HOH . 
G 5 HOH A 110 610 78 HOH HOH . 
G 5 HOH A 111 611 156 HOH HOH . 
G 5 HOH A 112 612 192 HOH HOH . 
G 5 HOH A 113 613 81 HOH HOH . 
G 5 HOH A 114 614 32 HOH HOH . 
G 5 HOH A 115 615 87 HOH HOH . 
G 5 HOH A 116 616 138 HOH HOH . 
G 5 HOH A 117 617 43 HOH HOH . 
G 5 HOH A 118 618 170 HOH HOH . 
G 5 HOH A 119 619 99 HOH HOH . 
G 5 HOH A 120 620 122 HOH HOH . 
G 5 HOH A 121 621 19 HOH HOH . 
G 5 HOH A 122 622 25 HOH HOH . 
G 5 HOH A 123 623 101 HOH HOH . 
G 5 HOH A 124 624 148 HOH HOH . 
G 5 HOH A 125 625 172 HOH HOH . 
G 5 HOH A 126 626 83 HOH HOH . 
G 5 HOH A 127 627 183 HOH HOH . 
G 5 HOH A 128 628 60 HOH HOH . 
G 5 HOH A 129 629 190 HOH HOH . 
G 5 HOH A 130 630 150 HOH HOH . 
G 5 HOH A 131 631 59 HOH HOH . 
G 5 HOH A 132 632 199 HOH HOH . 
G 5 HOH A 133 633 161 HOH HOH . 
G 5 HOH A 134 634 115 HOH HOH . 
G 5 HOH A 135 635 27 HOH HOH . 
G 5 HOH A 136 636 29 HOH HOH . 
G 5 HOH A 137 637 149 HOH HOH . 
G 5 HOH A 138 638 108 HOH HOH . 
G 5 HOH A 139 639 145 HOH HOH . 
G 5 HOH A 140 640 159 HOH HOH . 
G 5 HOH A 141 641 90 HOH HOH . 
G 5 HOH A 142 642 118 HOH HOH . 
G 5 HOH A 143 643 191 HOH HOH . 
G 5 HOH A 144 644 104 HOH HOH . 
G 5 HOH A 145 645 66 HOH HOH . 
G 5 HOH A 146 646 173 HOH HOH . 
G 5 HOH A 147 647 46 HOH HOH . 
G 5 HOH A 148 648 103 HOH HOH . 
G 5 HOH A 149 649 144 HOH HOH . 
G 5 HOH A 150 650 28 HOH HOH . 
G 5 HOH A 151 651 110 HOH HOH . 
G 5 HOH A 152 652 162 HOH HOH . 
G 5 HOH A 153 653 152 HOH HOH . 
G 5 HOH A 154 654 189 HOH HOH . 
G 5 HOH A 155 655 194 HOH HOH . 
G 5 HOH A 156 656 86 HOH HOH . 
G 5 HOH A 157 657 184 HOH HOH . 
G 5 HOH A 158 658 187 HOH HOH . 
G 5 HOH A 159 659 195 HOH HOH . 
G 5 HOH A 160 660 198 HOH HOH . 
G 5 HOH A 161 661 205 HOH HOH . 
G 5 HOH A 162 662 121 HOH HOH . 
G 5 HOH A 163 663 165 HOH HOH . 
G 5 HOH A 164 664 120 HOH HOH . 
G 5 HOH A 165 665 42 HOH HOH . 
G 5 HOH A 166 666 127 HOH HOH . 
G 5 HOH A 167 667 182 HOH HOH . 
G 5 HOH A 168 668 117 HOH HOH . 
G 5 HOH A 169 669 185 HOH HOH . 
G 5 HOH A 170 670 178 HOH HOH . 
G 5 HOH A 171 671 168 HOH HOH . 
G 5 HOH A 172 672 210 HOH HOH . 
G 5 HOH A 173 673 181 HOH HOH . 
G 5 HOH A 174 674 186 HOH HOH . 
G 5 HOH A 175 675 111 HOH HOH . 
G 5 HOH A 176 676 126 HOH HOH . 
G 5 HOH A 177 677 97 HOH HOH . 
G 5 HOH A 178 678 114 HOH HOH . 
G 5 HOH A 179 679 175 HOH HOH . 
G 5 HOH A 180 680 38 HOH HOH . 
G 5 HOH A 181 681 200 HOH HOH . 
G 5 HOH A 182 682 72 HOH HOH . 
G 5 HOH A 183 683 102 HOH HOH . 
G 5 HOH A 184 684 67 HOH HOH . 
G 5 HOH A 185 685 139 HOH HOH . 
G 5 HOH A 186 686 113 HOH HOH . 
G 5 HOH A 187 687 207 HOH HOH . 
G 5 HOH A 188 688 171 HOH HOH . 
G 5 HOH A 189 689 177 HOH HOH . 
G 5 HOH A 190 690 65 HOH HOH . 
G 5 HOH A 191 691 143 HOH HOH . 
G 5 HOH A 192 692 135 HOH HOH . 
G 5 HOH A 193 693 129 HOH HOH . 
G 5 HOH A 194 694 123 HOH HOH . 
G 5 HOH A 195 695 188 HOH HOH . 
G 5 HOH A 196 696 128 HOH HOH . 
G 5 HOH A 197 697 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -41.968 10.288 -14.159 1 59.49 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 4 -40.843 9.821 -13.491 1 59.59 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 4 -43.164 9.454 -13.646 1 57.05 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 4 -44.311 9.696 -14.385 1 60.38 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 4 -42.69 7.992 -13.756 1 48.84 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 4 -43.789 7.166 -13.503 1 40 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#