data_5YN6
#
_model_server_result.job_id            JPPAP7lFMAOrY6vwzz2gnA 
_model_server_result.datetime_utc      '2024-11-05 04:10:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yn6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    5YN6 
#
_exptl.entry_id    5YN6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YN6 
_cell.length_a            66.962 
_cell.length_b            70.171 
_cell.length_c            119.804 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YN6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 74 B CYS 74 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc2 B SG CYS 77 B CYS 77 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc3 B NE2 HIS 83 B HIS 83 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc4 B SG CYS 90 B CYS 90 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc5 B SG CYS 117 B CYS 117 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc6 B SG CYS 120 B CYS 120 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc7 B SG CYS 128 B CYS 128 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc8 B SG CYS 130 B CYS 130 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YN6 
_atom_sites.fract_transf_matrix[1][1]    0.014934 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014251 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008347 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SAM A 1 401 302 SAM SAM . 
D 4 ZN B 1 201 998 ZN ZN . 
E 4 ZN B 1 202 999 ZN ZN . 
F 5 HOH A 1 501 75 HOH HOH . 
F 5 HOH A 2 502 22 HOH HOH . 
F 5 HOH A 3 503 55 HOH HOH . 
F 5 HOH A 4 504 26 HOH HOH . 
F 5 HOH A 5 505 97 HOH HOH . 
F 5 HOH A 6 506 47 HOH HOH . 
F 5 HOH A 7 507 19 HOH HOH . 
F 5 HOH A 8 508 2 HOH HOH . 
F 5 HOH A 9 509 59 HOH HOH . 
F 5 HOH A 10 510 84 HOH HOH . 
F 5 HOH A 11 511 21 HOH HOH . 
F 5 HOH A 12 512 43 HOH HOH . 
F 5 HOH A 13 513 56 HOH HOH . 
F 5 HOH A 14 514 12 HOH HOH . 
F 5 HOH A 15 515 32 HOH HOH . 
F 5 HOH A 16 516 5 HOH HOH . 
F 5 HOH A 17 517 54 HOH HOH . 
F 5 HOH A 18 518 35 HOH HOH . 
F 5 HOH A 19 519 36 HOH HOH . 
F 5 HOH A 20 520 46 HOH HOH . 
F 5 HOH A 21 521 92 HOH HOH . 
F 5 HOH A 22 522 51 HOH HOH . 
F 5 HOH A 23 523 74 HOH HOH . 
F 5 HOH A 24 524 80 HOH HOH . 
F 5 HOH A 25 525 50 HOH HOH . 
F 5 HOH A 26 526 14 HOH HOH . 
F 5 HOH A 27 527 17 HOH HOH . 
F 5 HOH A 28 528 33 HOH HOH . 
F 5 HOH A 29 529 123 HOH HOH . 
F 5 HOH A 30 530 82 HOH HOH . 
F 5 HOH A 31 531 24 HOH HOH . 
F 5 HOH A 32 532 23 HOH HOH . 
F 5 HOH A 33 533 7 HOH HOH . 
F 5 HOH A 34 534 1 HOH HOH . 
F 5 HOH A 35 535 53 HOH HOH . 
F 5 HOH A 36 536 115 HOH HOH . 
F 5 HOH A 37 537 77 HOH HOH . 
F 5 HOH A 38 538 20 HOH HOH . 
F 5 HOH A 39 539 62 HOH HOH . 
F 5 HOH A 40 540 37 HOH HOH . 
F 5 HOH A 41 541 61 HOH HOH . 
F 5 HOH A 42 542 25 HOH HOH . 
F 5 HOH A 43 543 8 HOH HOH . 
F 5 HOH A 44 544 44 HOH HOH . 
F 5 HOH A 45 545 15 HOH HOH . 
F 5 HOH A 46 546 124 HOH HOH . 
F 5 HOH A 47 547 4 HOH HOH . 
F 5 HOH A 48 548 28 HOH HOH . 
F 5 HOH A 49 549 86 HOH HOH . 
F 5 HOH A 50 550 10 HOH HOH . 
F 5 HOH A 51 551 71 HOH HOH . 
F 5 HOH A 52 552 3 HOH HOH . 
F 5 HOH A 53 553 41 HOH HOH . 
F 5 HOH A 54 554 68 HOH HOH . 
F 5 HOH A 55 555 13 HOH HOH . 
F 5 HOH A 56 556 38 HOH HOH . 
F 5 HOH A 57 557 93 HOH HOH . 
F 5 HOH A 58 558 99 HOH HOH . 
F 5 HOH A 59 559 122 HOH HOH . 
F 5 HOH A 60 560 85 HOH HOH . 
F 5 HOH A 61 561 29 HOH HOH . 
F 5 HOH A 62 562 57 HOH HOH . 
F 5 HOH A 63 563 94 HOH HOH . 
F 5 HOH A 64 564 40 HOH HOH . 
F 5 HOH A 65 565 121 HOH HOH . 
F 5 HOH A 66 566 66 HOH HOH . 
F 5 HOH A 67 567 16 HOH HOH . 
F 5 HOH A 68 568 87 HOH HOH . 
F 5 HOH A 69 569 34 HOH HOH . 
F 5 HOH A 70 570 83 HOH HOH . 
F 5 HOH A 71 571 31 HOH HOH . 
F 5 HOH A 72 572 39 HOH HOH . 
F 5 HOH A 73 573 81 HOH HOH . 
F 5 HOH A 74 574 78 HOH HOH . 
F 5 HOH A 75 575 96 HOH HOH . 
F 5 HOH A 76 576 112 HOH HOH . 
F 5 HOH A 77 577 125 HOH HOH . 
F 5 HOH A 78 578 30 HOH HOH . 
F 5 HOH A 79 579 65 HOH HOH . 
F 5 HOH A 80 580 90 HOH HOH . 
F 5 HOH A 81 581 60 HOH HOH . 
F 5 HOH A 82 582 63 HOH HOH . 
F 5 HOH A 83 583 6 HOH HOH . 
F 5 HOH A 84 584 72 HOH HOH . 
F 5 HOH A 85 585 18 HOH HOH . 
F 5 HOH A 86 586 9 HOH HOH . 
F 5 HOH A 87 587 67 HOH HOH . 
F 5 HOH A 88 588 48 HOH HOH . 
F 5 HOH A 89 589 27 HOH HOH . 
F 5 HOH A 90 590 117 HOH HOH . 
F 5 HOH A 91 591 114 HOH HOH . 
F 5 HOH A 92 592 127 HOH HOH . 
F 5 HOH A 93 593 126 HOH HOH . 
F 5 HOH A 94 594 109 HOH HOH . 
F 5 HOH A 95 595 102 HOH HOH . 
F 5 HOH A 96 596 105 HOH HOH . 
F 5 HOH A 97 597 52 HOH HOH . 
F 5 HOH A 98 598 58 HOH HOH . 
F 5 HOH A 99 599 108 HOH HOH . 
F 5 HOH A 100 600 73 HOH HOH . 
F 5 HOH A 101 601 91 HOH HOH . 
F 5 HOH A 102 602 116 HOH HOH . 
F 5 HOH A 103 603 76 HOH HOH . 
F 5 HOH A 104 604 111 HOH HOH . 
F 5 HOH A 105 605 103 HOH HOH . 
F 5 HOH A 106 606 113 HOH HOH . 
F 5 HOH A 107 607 128 HOH HOH . 
F 5 HOH A 108 608 88 HOH HOH . 
F 5 HOH A 109 609 64 HOH HOH . 
F 5 HOH A 110 610 120 HOH HOH . 
F 5 HOH A 111 611 95 HOH HOH . 
F 5 HOH A 112 612 45 HOH HOH . 
F 5 HOH A 113 613 110 HOH HOH . 
F 5 HOH A 114 614 118 HOH HOH . 
F 5 HOH A 115 615 79 HOH HOH . 
F 5 HOH A 116 616 98 HOH HOH . 
F 5 HOH A 117 617 70 HOH HOH . 
F 5 HOH A 118 618 69 HOH HOH . 
F 5 HOH A 119 619 106 HOH HOH . 
F 5 HOH A 120 620 89 HOH HOH . 
F 5 HOH A 121 621 100 HOH HOH . 
F 5 HOH A 122 622 107 HOH HOH . 
F 5 HOH A 123 623 101 HOH HOH . 
G 5 HOH B 1 301 42 HOH HOH . 
G 5 HOH B 2 302 11 HOH HOH . 
G 5 HOH B 3 303 49 HOH HOH . 
G 5 HOH B 4 304 104 HOH HOH . 
G 5 HOH B 5 305 119 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               62.614 
_atom_site.Cartn_y               69.205 
_atom_site.Cartn_z               162.248 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        51.71 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#