data_5YNJ
#
_model_server_result.job_id            Irl3-NuOrZDY7L73pU_2Hw 
_model_server_result.datetime_utc      '2024-11-13 14:00:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ynj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    5YNJ 
#
_exptl.entry_id    5YNJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YNJ 
_cell.length_a            67.041 
_cell.length_b            70.516 
_cell.length_c            118.921 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YNJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 74 B CYS 74 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc2 B SG CYS 77 B CYS 77 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc3 B NE2 HIS 83 B HIS 83 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc4 B SG CYS 90 B CYS 90 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc5 B SG CYS 117 B CYS 117 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc6 B SG CYS 120 B CYS 120 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc7 B SG CYS 128 B CYS 128 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc8 B SG CYS 130 B CYS 130 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YNJ 
_atom_sites.fract_transf_matrix[1][1]    0.014916 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014181 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008409 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GTG A 1 501 501 GTG GTG . 
D 4 ZN B 1 201 998 ZN ZN . 
E 4 ZN B 1 202 999 ZN ZN . 
F 5 HOH A 1 601 31 HOH HOH . 
F 5 HOH A 2 602 59 HOH HOH . 
F 5 HOH A 3 603 27 HOH HOH . 
F 5 HOH A 4 604 41 HOH HOH . 
F 5 HOH A 5 605 5 HOH HOH . 
F 5 HOH A 6 606 35 HOH HOH . 
F 5 HOH A 7 607 110 HOH HOH . 
F 5 HOH A 8 608 42 HOH HOH . 
F 5 HOH A 9 609 48 HOH HOH . 
F 5 HOH A 10 610 6 HOH HOH . 
F 5 HOH A 11 611 34 HOH HOH . 
F 5 HOH A 12 612 12 HOH HOH . 
F 5 HOH A 13 613 23 HOH HOH . 
F 5 HOH A 14 614 75 HOH HOH . 
F 5 HOH A 15 615 51 HOH HOH . 
F 5 HOH A 16 616 2 HOH HOH . 
F 5 HOH A 17 617 117 HOH HOH . 
F 5 HOH A 18 618 16 HOH HOH . 
F 5 HOH A 19 619 52 HOH HOH . 
F 5 HOH A 20 620 57 HOH HOH . 
F 5 HOH A 21 621 19 HOH HOH . 
F 5 HOH A 22 622 1 HOH HOH . 
F 5 HOH A 23 623 25 HOH HOH . 
F 5 HOH A 24 624 17 HOH HOH . 
F 5 HOH A 25 625 139 HOH HOH . 
F 5 HOH A 26 626 43 HOH HOH . 
F 5 HOH A 27 627 36 HOH HOH . 
F 5 HOH A 28 628 119 HOH HOH . 
F 5 HOH A 29 629 65 HOH HOH . 
F 5 HOH A 30 630 38 HOH HOH . 
F 5 HOH A 31 631 64 HOH HOH . 
F 5 HOH A 32 632 113 HOH HOH . 
F 5 HOH A 33 633 107 HOH HOH . 
F 5 HOH A 34 634 9 HOH HOH . 
F 5 HOH A 35 635 24 HOH HOH . 
F 5 HOH A 36 636 13 HOH HOH . 
F 5 HOH A 37 637 22 HOH HOH . 
F 5 HOH A 38 638 88 HOH HOH . 
F 5 HOH A 39 639 29 HOH HOH . 
F 5 HOH A 40 640 21 HOH HOH . 
F 5 HOH A 41 641 30 HOH HOH . 
F 5 HOH A 42 642 4 HOH HOH . 
F 5 HOH A 43 643 74 HOH HOH . 
F 5 HOH A 44 644 15 HOH HOH . 
F 5 HOH A 45 645 118 HOH HOH . 
F 5 HOH A 46 646 44 HOH HOH . 
F 5 HOH A 47 647 68 HOH HOH . 
F 5 HOH A 48 648 127 HOH HOH . 
F 5 HOH A 49 649 116 HOH HOH . 
F 5 HOH A 50 650 20 HOH HOH . 
F 5 HOH A 51 651 92 HOH HOH . 
F 5 HOH A 52 652 120 HOH HOH . 
F 5 HOH A 53 653 46 HOH HOH . 
F 5 HOH A 54 654 70 HOH HOH . 
F 5 HOH A 55 655 141 HOH HOH . 
F 5 HOH A 56 656 80 HOH HOH . 
F 5 HOH A 57 657 140 HOH HOH . 
F 5 HOH A 58 658 137 HOH HOH . 
F 5 HOH A 59 659 72 HOH HOH . 
F 5 HOH A 60 660 14 HOH HOH . 
F 5 HOH A 61 661 97 HOH HOH . 
F 5 HOH A 62 662 8 HOH HOH . 
F 5 HOH A 63 663 83 HOH HOH . 
F 5 HOH A 64 664 106 HOH HOH . 
F 5 HOH A 65 665 123 HOH HOH . 
F 5 HOH A 66 666 86 HOH HOH . 
F 5 HOH A 67 667 99 HOH HOH . 
F 5 HOH A 68 668 114 HOH HOH . 
F 5 HOH A 69 669 79 HOH HOH . 
F 5 HOH A 70 670 112 HOH HOH . 
F 5 HOH A 71 671 58 HOH HOH . 
F 5 HOH A 72 672 82 HOH HOH . 
F 5 HOH A 73 673 45 HOH HOH . 
F 5 HOH A 74 674 94 HOH HOH . 
F 5 HOH A 75 675 101 HOH HOH . 
F 5 HOH A 76 676 124 HOH HOH . 
F 5 HOH A 77 677 47 HOH HOH . 
F 5 HOH A 78 678 157 HOH HOH . 
F 5 HOH A 79 679 3 HOH HOH . 
F 5 HOH A 80 680 54 HOH HOH . 
F 5 HOH A 81 681 11 HOH HOH . 
F 5 HOH A 82 682 40 HOH HOH . 
F 5 HOH A 83 683 108 HOH HOH . 
F 5 HOH A 84 684 78 HOH HOH . 
F 5 HOH A 85 685 28 HOH HOH . 
F 5 HOH A 86 686 37 HOH HOH . 
F 5 HOH A 87 687 66 HOH HOH . 
F 5 HOH A 88 688 160 HOH HOH . 
F 5 HOH A 89 689 85 HOH HOH . 
F 5 HOH A 90 690 122 HOH HOH . 
F 5 HOH A 91 691 165 HOH HOH . 
F 5 HOH A 92 692 33 HOH HOH . 
F 5 HOH A 93 693 69 HOH HOH . 
F 5 HOH A 94 694 103 HOH HOH . 
F 5 HOH A 95 695 151 HOH HOH . 
F 5 HOH A 96 696 143 HOH HOH . 
F 5 HOH A 97 697 10 HOH HOH . 
F 5 HOH A 98 698 71 HOH HOH . 
F 5 HOH A 99 699 39 HOH HOH . 
F 5 HOH A 100 700 102 HOH HOH . 
F 5 HOH A 101 701 53 HOH HOH . 
F 5 HOH A 102 702 130 HOH HOH . 
F 5 HOH A 103 703 126 HOH HOH . 
F 5 HOH A 104 704 62 HOH HOH . 
F 5 HOH A 105 705 63 HOH HOH . 
F 5 HOH A 106 706 56 HOH HOH . 
F 5 HOH A 107 707 93 HOH HOH . 
F 5 HOH A 108 708 121 HOH HOH . 
F 5 HOH A 109 709 81 HOH HOH . 
F 5 HOH A 110 710 98 HOH HOH . 
F 5 HOH A 111 711 100 HOH HOH . 
F 5 HOH A 112 712 32 HOH HOH . 
F 5 HOH A 113 713 61 HOH HOH . 
F 5 HOH A 114 714 174 HOH HOH . 
F 5 HOH A 115 715 129 HOH HOH . 
F 5 HOH A 116 716 153 HOH HOH . 
F 5 HOH A 117 717 162 HOH HOH . 
F 5 HOH A 118 718 145 HOH HOH . 
F 5 HOH A 119 719 55 HOH HOH . 
F 5 HOH A 120 720 76 HOH HOH . 
F 5 HOH A 121 721 91 HOH HOH . 
F 5 HOH A 122 722 133 HOH HOH . 
F 5 HOH A 123 723 154 HOH HOH . 
F 5 HOH A 124 724 87 HOH HOH . 
F 5 HOH A 125 725 163 HOH HOH . 
F 5 HOH A 126 726 49 HOH HOH . 
F 5 HOH A 127 727 169 HOH HOH . 
F 5 HOH A 128 728 104 HOH HOH . 
F 5 HOH A 129 729 176 HOH HOH . 
F 5 HOH A 130 730 161 HOH HOH . 
F 5 HOH A 131 731 95 HOH HOH . 
F 5 HOH A 132 732 164 HOH HOH . 
F 5 HOH A 133 733 138 HOH HOH . 
F 5 HOH A 134 734 172 HOH HOH . 
F 5 HOH A 135 735 73 HOH HOH . 
F 5 HOH A 136 736 90 HOH HOH . 
F 5 HOH A 137 737 146 HOH HOH . 
F 5 HOH A 138 738 168 HOH HOH . 
F 5 HOH A 139 739 128 HOH HOH . 
F 5 HOH A 140 740 26 HOH HOH . 
F 5 HOH A 141 741 171 HOH HOH . 
F 5 HOH A 142 742 173 HOH HOH . 
F 5 HOH A 143 743 170 HOH HOH . 
F 5 HOH A 144 744 147 HOH HOH . 
F 5 HOH A 145 745 148 HOH HOH . 
F 5 HOH A 146 746 144 HOH HOH . 
F 5 HOH A 147 747 67 HOH HOH . 
F 5 HOH A 148 748 77 HOH HOH . 
F 5 HOH A 149 749 152 HOH HOH . 
F 5 HOH A 150 750 175 HOH HOH . 
F 5 HOH A 151 751 136 HOH HOH . 
F 5 HOH A 152 752 156 HOH HOH . 
F 5 HOH A 153 753 134 HOH HOH . 
F 5 HOH A 154 754 132 HOH HOH . 
F 5 HOH A 155 755 50 HOH HOH . 
F 5 HOH A 156 756 155 HOH HOH . 
F 5 HOH A 157 757 158 HOH HOH . 
F 5 HOH A 158 758 166 HOH HOH . 
F 5 HOH A 159 759 159 HOH HOH . 
F 5 HOH A 160 760 167 HOH HOH . 
G 5 HOH B 1 301 125 HOH HOH . 
G 5 HOH B 2 302 135 HOH HOH . 
G 5 HOH B 3 303 96 HOH HOH . 
G 5 HOH B 4 304 109 HOH HOH . 
G 5 HOH B 5 305 111 HOH HOH . 
G 5 HOH B 6 306 7 HOH HOH . 
G 5 HOH B 7 307 60 HOH HOH . 
G 5 HOH B 8 308 18 HOH HOH . 
G 5 HOH B 9 309 131 HOH HOH . 
G 5 HOH B 10 310 84 HOH HOH . 
G 5 HOH B 11 311 105 HOH HOH . 
G 5 HOH B 12 312 142 HOH HOH . 
G 5 HOH B 13 313 149 HOH HOH . 
G 5 HOH B 14 314 89 HOH HOH . 
G 5 HOH B 15 315 150 HOH HOH . 
G 5 HOH B 16 316 115 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               78.806 
_atom_site.Cartn_y               61.138 
_atom_site.Cartn_z               175.024 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        77.68 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           220 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#