data_5YNM
#
_model_server_result.job_id            qeaMh3TtrWetx9NgLSN2Ow 
_model_server_result.datetime_utc      '2025-02-17 09:12:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ynm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    5YNM 
#
_exptl.entry_id    5YNM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YNM 
_cell.length_a            67.713 
_cell.length_b            70.024 
_cell.length_c            120.131 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YNM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 74 B CYS 74 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc2 B SG CYS 77 B CYS 77 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc3 B NE2 HIS 83 B HIS 83 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc4 B SG CYS 90 B CYS 90 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc5 B SG CYS 117 B CYS 117 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc6 B SG CYS 120 B CYS 120 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc7 B SG CYS 128 B CYS 128 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc8 B SG CYS 130 B CYS 130 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YNM 
_atom_sites.fract_transf_matrix[1][1]    0.014768 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014281 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SAM A 1 401 302 SAM SAM . 
D 4 GTA A 1 402 451 GTA GTA . 
E 5 ZN B 1 201 998 ZN ZN . 
F 5 ZN B 1 202 999 ZN ZN . 
G 6 HOH A 1 501 32 HOH HOH . 
G 6 HOH A 2 502 85 HOH HOH . 
G 6 HOH A 3 503 111 HOH HOH . 
G 6 HOH A 4 504 44 HOH HOH . 
G 6 HOH A 5 505 118 HOH HOH . 
G 6 HOH A 6 506 65 HOH HOH . 
G 6 HOH A 7 507 256 HOH HOH . 
G 6 HOH A 8 508 45 HOH HOH . 
G 6 HOH A 9 509 87 HOH HOH . 
G 6 HOH A 10 510 173 HOH HOH . 
G 6 HOH A 11 511 144 HOH HOH . 
G 6 HOH A 12 512 10 HOH HOH . 
G 6 HOH A 13 513 1 HOH HOH . 
G 6 HOH A 14 514 69 HOH HOH . 
G 6 HOH A 15 515 20 HOH HOH . 
G 6 HOH A 16 516 61 HOH HOH . 
G 6 HOH A 17 517 57 HOH HOH . 
G 6 HOH A 18 518 147 HOH HOH . 
G 6 HOH A 19 519 92 HOH HOH . 
G 6 HOH A 20 520 99 HOH HOH . 
G 6 HOH A 21 521 202 HOH HOH . 
G 6 HOH A 22 522 166 HOH HOH . 
G 6 HOH A 23 523 46 HOH HOH . 
G 6 HOH A 24 524 8 HOH HOH . 
G 6 HOH A 25 525 168 HOH HOH . 
G 6 HOH A 26 526 75 HOH HOH . 
G 6 HOH A 27 527 109 HOH HOH . 
G 6 HOH A 28 528 59 HOH HOH . 
G 6 HOH A 29 529 35 HOH HOH . 
G 6 HOH A 30 530 48 HOH HOH . 
G 6 HOH A 31 531 21 HOH HOH . 
G 6 HOH A 32 532 2 HOH HOH . 
G 6 HOH A 33 533 56 HOH HOH . 
G 6 HOH A 34 534 142 HOH HOH . 
G 6 HOH A 35 535 40 HOH HOH . 
G 6 HOH A 36 536 26 HOH HOH . 
G 6 HOH A 37 537 19 HOH HOH . 
G 6 HOH A 38 538 5 HOH HOH . 
G 6 HOH A 39 539 38 HOH HOH . 
G 6 HOH A 40 540 201 HOH HOH . 
G 6 HOH A 41 541 43 HOH HOH . 
G 6 HOH A 42 542 36 HOH HOH . 
G 6 HOH A 43 543 33 HOH HOH . 
G 6 HOH A 44 544 39 HOH HOH . 
G 6 HOH A 45 545 143 HOH HOH . 
G 6 HOH A 46 546 7 HOH HOH . 
G 6 HOH A 47 547 167 HOH HOH . 
G 6 HOH A 48 548 34 HOH HOH . 
G 6 HOH A 49 549 83 HOH HOH . 
G 6 HOH A 50 550 134 HOH HOH . 
G 6 HOH A 51 551 125 HOH HOH . 
G 6 HOH A 52 552 29 HOH HOH . 
G 6 HOH A 53 553 152 HOH HOH . 
G 6 HOH A 54 554 254 HOH HOH . 
G 6 HOH A 55 555 123 HOH HOH . 
G 6 HOH A 56 556 77 HOH HOH . 
G 6 HOH A 57 557 24 HOH HOH . 
G 6 HOH A 58 558 72 HOH HOH . 
G 6 HOH A 59 559 64 HOH HOH . 
G 6 HOH A 60 560 183 HOH HOH . 
G 6 HOH A 61 561 115 HOH HOH . 
G 6 HOH A 62 562 82 HOH HOH . 
G 6 HOH A 63 563 178 HOH HOH . 
G 6 HOH A 64 564 107 HOH HOH . 
G 6 HOH A 65 565 71 HOH HOH . 
G 6 HOH A 66 566 31 HOH HOH . 
G 6 HOH A 67 567 12 HOH HOH . 
G 6 HOH A 68 568 6 HOH HOH . 
G 6 HOH A 69 569 185 HOH HOH . 
G 6 HOH A 70 570 154 HOH HOH . 
G 6 HOH A 71 571 223 HOH HOH . 
G 6 HOH A 72 572 211 HOH HOH . 
G 6 HOH A 73 573 246 HOH HOH . 
G 6 HOH A 74 574 67 HOH HOH . 
G 6 HOH A 75 575 103 HOH HOH . 
G 6 HOH A 76 576 139 HOH HOH . 
G 6 HOH A 77 577 4 HOH HOH . 
G 6 HOH A 78 578 42 HOH HOH . 
G 6 HOH A 79 579 224 HOH HOH . 
G 6 HOH A 80 580 25 HOH HOH . 
G 6 HOH A 81 581 30 HOH HOH . 
G 6 HOH A 82 582 189 HOH HOH . 
G 6 HOH A 83 583 124 HOH HOH . 
G 6 HOH A 84 584 228 HOH HOH . 
G 6 HOH A 85 585 49 HOH HOH . 
G 6 HOH A 86 586 249 HOH HOH . 
G 6 HOH A 87 587 73 HOH HOH . 
G 6 HOH A 88 588 156 HOH HOH . 
G 6 HOH A 89 589 132 HOH HOH . 
G 6 HOH A 90 590 3 HOH HOH . 
G 6 HOH A 91 591 108 HOH HOH . 
G 6 HOH A 92 592 41 HOH HOH . 
G 6 HOH A 93 593 215 HOH HOH . 
G 6 HOH A 94 594 18 HOH HOH . 
G 6 HOH A 95 595 230 HOH HOH . 
G 6 HOH A 96 596 89 HOH HOH . 
G 6 HOH A 97 597 58 HOH HOH . 
G 6 HOH A 98 598 15 HOH HOH . 
G 6 HOH A 99 599 119 HOH HOH . 
G 6 HOH A 100 600 68 HOH HOH . 
G 6 HOH A 101 601 54 HOH HOH . 
G 6 HOH A 102 602 16 HOH HOH . 
G 6 HOH A 103 603 11 HOH HOH . 
G 6 HOH A 104 604 62 HOH HOH . 
G 6 HOH A 105 605 170 HOH HOH . 
G 6 HOH A 106 606 176 HOH HOH . 
G 6 HOH A 107 607 165 HOH HOH . 
G 6 HOH A 108 608 100 HOH HOH . 
G 6 HOH A 109 609 239 HOH HOH . 
G 6 HOH A 110 610 122 HOH HOH . 
G 6 HOH A 111 611 98 HOH HOH . 
G 6 HOH A 112 612 60 HOH HOH . 
G 6 HOH A 113 613 63 HOH HOH . 
G 6 HOH A 114 614 191 HOH HOH . 
G 6 HOH A 115 615 37 HOH HOH . 
G 6 HOH A 116 616 13 HOH HOH . 
G 6 HOH A 117 617 113 HOH HOH . 
G 6 HOH A 118 618 112 HOH HOH . 
G 6 HOH A 119 619 51 HOH HOH . 
G 6 HOH A 120 620 23 HOH HOH . 
G 6 HOH A 121 621 9 HOH HOH . 
G 6 HOH A 122 622 181 HOH HOH . 
G 6 HOH A 123 623 17 HOH HOH . 
G 6 HOH A 124 624 120 HOH HOH . 
G 6 HOH A 125 625 209 HOH HOH . 
G 6 HOH A 126 626 195 HOH HOH . 
G 6 HOH A 127 627 138 HOH HOH . 
G 6 HOH A 128 628 216 HOH HOH . 
G 6 HOH A 129 629 66 HOH HOH . 
G 6 HOH A 130 630 47 HOH HOH . 
G 6 HOH A 131 631 194 HOH HOH . 
G 6 HOH A 132 632 78 HOH HOH . 
G 6 HOH A 133 633 22 HOH HOH . 
G 6 HOH A 134 634 55 HOH HOH . 
G 6 HOH A 135 635 208 HOH HOH . 
G 6 HOH A 136 636 251 HOH HOH . 
G 6 HOH A 137 637 27 HOH HOH . 
G 6 HOH A 138 638 76 HOH HOH . 
G 6 HOH A 139 639 74 HOH HOH . 
G 6 HOH A 140 640 198 HOH HOH . 
G 6 HOH A 141 641 94 HOH HOH . 
G 6 HOH A 142 642 126 HOH HOH . 
G 6 HOH A 143 643 116 HOH HOH . 
G 6 HOH A 144 644 207 HOH HOH . 
G 6 HOH A 145 645 117 HOH HOH . 
G 6 HOH A 146 646 106 HOH HOH . 
G 6 HOH A 147 647 229 HOH HOH . 
G 6 HOH A 148 648 174 HOH HOH . 
G 6 HOH A 149 649 97 HOH HOH . 
G 6 HOH A 150 650 243 HOH HOH . 
G 6 HOH A 151 651 128 HOH HOH . 
G 6 HOH A 152 652 52 HOH HOH . 
G 6 HOH A 153 653 217 HOH HOH . 
G 6 HOH A 154 654 234 HOH HOH . 
G 6 HOH A 155 655 95 HOH HOH . 
G 6 HOH A 156 656 214 HOH HOH . 
G 6 HOH A 157 657 137 HOH HOH . 
G 6 HOH A 158 658 157 HOH HOH . 
G 6 HOH A 159 659 235 HOH HOH . 
G 6 HOH A 160 660 197 HOH HOH . 
G 6 HOH A 161 661 222 HOH HOH . 
G 6 HOH A 162 662 184 HOH HOH . 
G 6 HOH A 163 663 232 HOH HOH . 
G 6 HOH A 164 664 218 HOH HOH . 
G 6 HOH A 165 665 145 HOH HOH . 
G 6 HOH A 166 666 53 HOH HOH . 
G 6 HOH A 167 667 171 HOH HOH . 
G 6 HOH A 168 668 225 HOH HOH . 
G 6 HOH A 169 669 190 HOH HOH . 
G 6 HOH A 170 670 186 HOH HOH . 
G 6 HOH A 171 671 241 HOH HOH . 
G 6 HOH A 172 672 247 HOH HOH . 
G 6 HOH A 173 673 102 HOH HOH . 
G 6 HOH A 174 674 227 HOH HOH . 
G 6 HOH A 175 675 80 HOH HOH . 
G 6 HOH A 176 676 140 HOH HOH . 
G 6 HOH A 177 677 245 HOH HOH . 
G 6 HOH A 178 678 213 HOH HOH . 
G 6 HOH A 179 679 257 HOH HOH . 
G 6 HOH A 180 680 210 HOH HOH . 
G 6 HOH A 181 681 182 HOH HOH . 
G 6 HOH A 182 682 244 HOH HOH . 
G 6 HOH A 183 683 121 HOH HOH . 
G 6 HOH A 184 684 179 HOH HOH . 
G 6 HOH A 185 685 70 HOH HOH . 
G 6 HOH A 186 686 231 HOH HOH . 
G 6 HOH A 187 687 28 HOH HOH . 
G 6 HOH A 188 688 158 HOH HOH . 
G 6 HOH A 189 689 86 HOH HOH . 
G 6 HOH A 190 690 130 HOH HOH . 
G 6 HOH A 191 691 238 HOH HOH . 
G 6 HOH A 192 692 203 HOH HOH . 
G 6 HOH A 193 693 127 HOH HOH . 
G 6 HOH A 194 694 169 HOH HOH . 
G 6 HOH A 195 695 240 HOH HOH . 
G 6 HOH A 196 696 187 HOH HOH . 
G 6 HOH A 197 697 204 HOH HOH . 
G 6 HOH A 198 698 205 HOH HOH . 
G 6 HOH A 199 699 161 HOH HOH . 
G 6 HOH A 200 700 79 HOH HOH . 
G 6 HOH A 201 701 172 HOH HOH . 
G 6 HOH A 202 702 129 HOH HOH . 
G 6 HOH A 203 703 196 HOH HOH . 
G 6 HOH A 204 704 219 HOH HOH . 
G 6 HOH A 205 705 233 HOH HOH . 
G 6 HOH A 206 706 236 HOH HOH . 
G 6 HOH A 207 707 131 HOH HOH . 
G 6 HOH A 208 708 226 HOH HOH . 
H 6 HOH B 1 301 90 HOH HOH . 
H 6 HOH B 2 302 110 HOH HOH . 
H 6 HOH B 3 303 150 HOH HOH . 
H 6 HOH B 4 304 104 HOH HOH . 
H 6 HOH B 5 305 162 HOH HOH . 
H 6 HOH B 6 306 101 HOH HOH . 
H 6 HOH B 7 307 133 HOH HOH . 
H 6 HOH B 8 308 206 HOH HOH . 
H 6 HOH B 9 309 114 HOH HOH . 
H 6 HOH B 10 310 141 HOH HOH . 
H 6 HOH B 11 311 88 HOH HOH . 
H 6 HOH B 12 312 250 HOH HOH . 
H 6 HOH B 13 313 84 HOH HOH . 
H 6 HOH B 14 314 192 HOH HOH . 
H 6 HOH B 15 315 14 HOH HOH . 
H 6 HOH B 16 316 153 HOH HOH . 
H 6 HOH B 17 317 81 HOH HOH . 
H 6 HOH B 18 318 149 HOH HOH . 
H 6 HOH B 19 319 180 HOH HOH . 
H 6 HOH B 20 320 50 HOH HOH . 
H 6 HOH B 21 321 148 HOH HOH . 
H 6 HOH B 22 322 199 HOH HOH . 
H 6 HOH B 23 323 155 HOH HOH . 
H 6 HOH B 24 324 159 HOH HOH . 
H 6 HOH B 25 325 175 HOH HOH . 
H 6 HOH B 26 326 252 HOH HOH . 
H 6 HOH B 27 327 151 HOH HOH . 
H 6 HOH B 28 328 163 HOH HOH . 
H 6 HOH B 29 329 248 HOH HOH . 
H 6 HOH B 30 330 96 HOH HOH . 
H 6 HOH B 31 331 136 HOH HOH . 
H 6 HOH B 32 332 146 HOH HOH . 
H 6 HOH B 33 333 105 HOH HOH . 
H 6 HOH B 34 334 160 HOH HOH . 
H 6 HOH B 35 335 135 HOH HOH . 
H 6 HOH B 36 336 253 HOH HOH . 
H 6 HOH B 37 337 255 HOH HOH . 
H 6 HOH B 38 338 93 HOH HOH . 
H 6 HOH B 39 339 220 HOH HOH . 
H 6 HOH B 40 340 212 HOH HOH . 
H 6 HOH B 41 341 242 HOH HOH . 
H 6 HOH B 42 342 164 HOH HOH . 
H 6 HOH B 43 343 177 HOH HOH . 
H 6 HOH B 44 344 91 HOH HOH . 
H 6 HOH B 45 345 200 HOH HOH . 
H 6 HOH B 46 346 188 HOH HOH . 
H 6 HOH B 47 347 193 HOH HOH . 
H 6 HOH B 48 348 237 HOH HOH . 
H 6 HOH B 49 349 221 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               63.576 
_atom_site.Cartn_y               69.083 
_atom_site.Cartn_z               162.512 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.38 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#