data_5YO2 # _model_server_result.job_id yxT7t9i8JKJlD1RaBshbzg _model_server_result.datetime_utc '2025-03-06 07:31:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yo2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5YO2 # _exptl.entry_id 5YO2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YO2 _cell.length_a 79.773 _cell.length_b 79.773 _cell.length_c 115.388 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 104 n n N H ARG sing 105 n n N H2 ARG sing 106 n n CA C ARG sing 107 n n CA CB ARG sing 108 n n CA HA ARG sing 109 n n C O ARG doub 110 n n C OXT ARG sing 111 n n CB CG ARG sing 112 n n CB HB2 ARG sing 113 n n CB HB3 ARG sing 114 n n CG CD ARG sing 115 n n CG HG2 ARG sing 116 n n CG HG3 ARG sing 117 n n CD NE ARG sing 118 n n CD HD2 ARG sing 119 n n CD HD3 ARG sing 120 n n NE CZ ARG sing 121 n n NE HE ARG sing 122 n n CZ NH1 ARG sing 123 n n CZ NH2 ARG doub 124 n n NH1 HH11 ARG sing 125 n n NH1 HH12 ARG sing 126 n n NH2 HH21 ARG sing 127 n n NH2 HH22 ARG sing 128 n n OXT HXT ARG sing 129 n n # _atom_sites.entry_id 5YO2 _atom_sites.fract_transf_matrix[1][1] 0.012536 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ARG A 1 201 200 ARG ARG . D 3 ACO A 1 202 1 ACO ACO . E 2 ARG B 1 200 200 ARG ARG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . C 2 27.219 67.78 62.954 1 42.08 ? N ARG 201 A 1 HETATM 2 C CA ARG . . . C 2 27.133 68.768 61.886 1 43.96 ? CA ARG 201 A 1 HETATM 3 C C ARG . . . C 2 26.187 68.29 60.79 1 46.13 ? C ARG 201 A 1 HETATM 4 O O ARG . . . C 2 25.972 68.973 59.79 1 48.82 ? O ARG 201 A 1 HETATM 5 C CB ARG . . . C 2 28.521 69.053 61.309 1 44.79 ? CB ARG 201 A 1 HETATM 6 C CG ARG . . . C 2 29.455 69.735 62.294 1 42.42 ? CG ARG 201 A 1 HETATM 7 C CD ARG . . . C 2 30.741 70.208 61.64 1 43.29 ? CD ARG 201 A 1 HETATM 8 N NE ARG . . . C 2 30.528 71.288 60.673 1 46.09 ? NE ARG 201 A 1 HETATM 9 C CZ ARG . . . C 2 30.648 71.176 59.349 1 48.96 ? CZ ARG 201 A 1 HETATM 10 N NH1 ARG . . . C 2 30.992 70.024 58.787 1 45.33 ? NH1 ARG 201 A 1 HETATM 11 N NH2 ARG . . . C 2 30.432 72.232 58.577 1 45.56 ? NH2 ARG 201 A 1 HETATM 12 O OXT ARG . . . C 2 25.608 67.208 60.884 1 48.2 ? OXT ARG 201 A 1 HETATM 13 H HA ARG . . . C 2 26.781 69.596 62.247 1 55.33 ? HA ARG 201 A 1 HETATM 14 H HB2 ARG . . . C 2 28.929 68.213 61.044 1 56.34 ? HB2 ARG 201 A 1 HETATM 15 H HB3 ARG . . . C 2 28.427 69.632 60.537 1 56.34 ? HB3 ARG 201 A 1 HETATM 16 H HG2 ARG . . . C 2 29.007 70.508 62.671 1 53.48 ? HG2 ARG 201 A 1 HETATM 17 H HG3 ARG . . . C 2 29.687 69.108 62.996 1 53.48 ? HG3 ARG 201 A 1 HETATM 18 H HD2 ARG . . . C 2 31.342 70.536 62.327 1 54.53 ? HD2 ARG 201 A 1 HETATM 19 H HD3 ARG . . . C 2 31.149 69.463 61.171 1 54.53 ? HD3 ARG 201 A 1 HETATM 20 H HE ARG . . . C 2 30.308 72.058 60.984 1 57.89 ? HE ARG 201 A 1 HETATM 21 H HH11 ARG . . . C 2 31.136 69.333 59.278 1 56.98 ? HH11 ARG 201 A 1 HETATM 22 H HH12 ARG . . . C 2 31.066 69.968 57.933 1 56.98 ? HH12 ARG 201 A 1 HETATM 23 H HH21 ARG . . . C 2 30.21 72.984 58.93 1 57.26 ? HH21 ARG 201 A 1 HETATM 24 H HH22 ARG . . . C 2 30.509 72.164 57.723 1 57.26 ? HH22 ARG 201 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #