data_5YOE # _model_server_result.job_id mY973ng7GouWFomCIpoykg _model_server_result.datetime_utc '2024-12-25 14:09:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yoe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5YOE # _exptl.entry_id 5YOE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.03 _cell.angle_gamma 90 _cell.entry_id 5YOE _cell.length_a 32.45 _cell.length_b 56.132 _cell.length_c 40.954 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 43 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 43 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 74 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 74 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 5YOE _atom_sites.fract_transf_matrix[1][1] 0.030817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006006 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 1 FMN FMN . C 3 GOL A 1 202 1 GOL GOL . D 4 HOH A 1 301 93 HOH HOH . D 4 HOH A 2 302 195 HOH HOH . D 4 HOH A 3 303 222 HOH HOH . D 4 HOH A 4 304 152 HOH HOH . D 4 HOH A 5 305 155 HOH HOH . D 4 HOH A 6 306 87 HOH HOH . D 4 HOH A 7 307 184 HOH HOH . D 4 HOH A 8 308 198 HOH HOH . D 4 HOH A 9 309 60 HOH HOH . D 4 HOH A 10 310 205 HOH HOH . D 4 HOH A 11 311 243 HOH HOH . D 4 HOH A 12 312 160 HOH HOH . D 4 HOH A 13 313 61 HOH HOH . D 4 HOH A 14 314 220 HOH HOH . D 4 HOH A 15 315 97 HOH HOH . D 4 HOH A 16 316 185 HOH HOH . D 4 HOH A 17 317 100 HOH HOH . D 4 HOH A 18 318 196 HOH HOH . D 4 HOH A 19 319 79 HOH HOH . D 4 HOH A 20 320 194 HOH HOH . D 4 HOH A 21 321 11 HOH HOH . D 4 HOH A 22 322 123 HOH HOH . D 4 HOH A 23 323 106 HOH HOH . D 4 HOH A 24 324 39 HOH HOH . D 4 HOH A 25 325 107 HOH HOH . D 4 HOH A 26 326 221 HOH HOH . D 4 HOH A 27 327 181 HOH HOH . D 4 HOH A 28 328 217 HOH HOH . D 4 HOH A 29 329 3 HOH HOH . D 4 HOH A 30 330 143 HOH HOH . D 4 HOH A 31 331 135 HOH HOH . D 4 HOH A 32 332 182 HOH HOH . D 4 HOH A 33 333 72 HOH HOH . D 4 HOH A 34 334 200 HOH HOH . D 4 HOH A 35 335 1 HOH HOH . D 4 HOH A 36 336 232 HOH HOH . D 4 HOH A 37 337 244 HOH HOH . D 4 HOH A 38 338 113 HOH HOH . D 4 HOH A 39 339 81 HOH HOH . D 4 HOH A 40 340 266 HOH HOH . D 4 HOH A 41 341 9 HOH HOH . D 4 HOH A 42 342 88 HOH HOH . D 4 HOH A 43 343 67 HOH HOH . D 4 HOH A 44 344 78 HOH HOH . D 4 HOH A 45 345 20 HOH HOH . D 4 HOH A 46 346 31 HOH HOH . D 4 HOH A 47 347 179 HOH HOH . D 4 HOH A 48 348 53 HOH HOH . D 4 HOH A 49 349 13 HOH HOH . D 4 HOH A 50 350 154 HOH HOH . D 4 HOH A 51 351 141 HOH HOH . D 4 HOH A 52 352 25 HOH HOH . D 4 HOH A 53 353 30 HOH HOH . D 4 HOH A 54 354 57 HOH HOH . D 4 HOH A 55 355 258 HOH HOH . D 4 HOH A 56 356 132 HOH HOH . D 4 HOH A 57 357 29 HOH HOH . D 4 HOH A 58 358 192 HOH HOH . D 4 HOH A 59 359 91 HOH HOH . D 4 HOH A 60 360 115 HOH HOH . D 4 HOH A 61 361 22 HOH HOH . D 4 HOH A 62 362 46 HOH HOH . D 4 HOH A 63 363 133 HOH HOH . D 4 HOH A 64 364 35 HOH HOH . D 4 HOH A 65 365 24 HOH HOH . D 4 HOH A 66 366 50 HOH HOH . D 4 HOH A 67 367 121 HOH HOH . D 4 HOH A 68 368 2 HOH HOH . D 4 HOH A 69 369 183 HOH HOH . D 4 HOH A 70 370 43 HOH HOH . D 4 HOH A 71 371 161 HOH HOH . D 4 HOH A 72 372 15 HOH HOH . D 4 HOH A 73 373 6 HOH HOH . D 4 HOH A 74 374 4 HOH HOH . D 4 HOH A 75 375 120 HOH HOH . D 4 HOH A 76 376 54 HOH HOH . D 4 HOH A 77 377 104 HOH HOH . D 4 HOH A 78 378 85 HOH HOH . D 4 HOH A 79 379 109 HOH HOH . D 4 HOH A 80 380 112 HOH HOH . D 4 HOH A 81 381 7 HOH HOH . D 4 HOH A 82 382 241 HOH HOH . D 4 HOH A 83 383 37 HOH HOH . D 4 HOH A 84 384 70 HOH HOH . D 4 HOH A 85 385 34 HOH HOH . D 4 HOH A 86 386 94 HOH HOH . D 4 HOH A 87 387 128 HOH HOH . D 4 HOH A 88 388 193 HOH HOH . D 4 HOH A 89 389 174 HOH HOH . D 4 HOH A 90 390 172 HOH HOH . D 4 HOH A 91 391 265 HOH HOH . D 4 HOH A 92 392 134 HOH HOH . D 4 HOH A 93 393 168 HOH HOH . D 4 HOH A 94 394 42 HOH HOH . D 4 HOH A 95 395 231 HOH HOH . D 4 HOH A 96 396 147 HOH HOH . D 4 HOH A 97 397 26 HOH HOH . D 4 HOH A 98 398 110 HOH HOH . D 4 HOH A 99 399 23 HOH HOH . D 4 HOH A 100 400 10 HOH HOH . D 4 HOH A 101 401 248 HOH HOH . D 4 HOH A 102 402 236 HOH HOH . D 4 HOH A 103 403 5 HOH HOH . D 4 HOH A 104 404 159 HOH HOH . D 4 HOH A 105 405 99 HOH HOH . D 4 HOH A 106 406 51 HOH HOH . D 4 HOH A 107 407 66 HOH HOH . D 4 HOH A 108 408 38 HOH HOH . D 4 HOH A 109 409 114 HOH HOH . D 4 HOH A 110 410 48 HOH HOH . D 4 HOH A 111 411 95 HOH HOH . D 4 HOH A 112 412 16 HOH HOH . D 4 HOH A 113 413 8 HOH HOH . D 4 HOH A 114 414 68 HOH HOH . D 4 HOH A 115 415 144 HOH HOH . D 4 HOH A 116 416 119 HOH HOH . D 4 HOH A 117 417 21 HOH HOH . D 4 HOH A 118 418 116 HOH HOH . D 4 HOH A 119 419 12 HOH HOH . D 4 HOH A 120 420 177 HOH HOH . D 4 HOH A 121 421 242 HOH HOH . D 4 HOH A 122 422 44 HOH HOH . D 4 HOH A 123 423 150 HOH HOH . D 4 HOH A 124 424 17 HOH HOH . D 4 HOH A 125 425 259 HOH HOH . D 4 HOH A 126 426 252 HOH HOH . D 4 HOH A 127 427 19 HOH HOH . D 4 HOH A 128 428 58 HOH HOH . D 4 HOH A 129 429 18 HOH HOH . D 4 HOH A 130 430 74 HOH HOH . D 4 HOH A 131 431 73 HOH HOH . D 4 HOH A 132 432 45 HOH HOH . D 4 HOH A 133 433 175 HOH HOH . D 4 HOH A 134 434 49 HOH HOH . D 4 HOH A 135 435 158 HOH HOH . D 4 HOH A 136 436 166 HOH HOH . D 4 HOH A 137 437 216 HOH HOH . D 4 HOH A 138 438 245 HOH HOH . D 4 HOH A 139 439 89 HOH HOH . D 4 HOH A 140 440 204 HOH HOH . D 4 HOH A 141 441 202 HOH HOH . D 4 HOH A 142 442 186 HOH HOH . D 4 HOH A 143 443 77 HOH HOH . D 4 HOH A 144 444 118 HOH HOH . D 4 HOH A 145 445 237 HOH HOH . D 4 HOH A 146 446 28 HOH HOH . D 4 HOH A 147 447 98 HOH HOH . D 4 HOH A 148 448 130 HOH HOH . D 4 HOH A 149 449 188 HOH HOH . D 4 HOH A 150 450 90 HOH HOH . D 4 HOH A 151 451 151 HOH HOH . D 4 HOH A 152 452 103 HOH HOH . D 4 HOH A 153 453 83 HOH HOH . D 4 HOH A 154 454 14 HOH HOH . D 4 HOH A 155 455 71 HOH HOH . D 4 HOH A 156 456 36 HOH HOH . D 4 HOH A 157 457 201 HOH HOH . D 4 HOH A 158 458 215 HOH HOH . D 4 HOH A 159 459 165 HOH HOH . D 4 HOH A 160 460 137 HOH HOH . D 4 HOH A 161 461 173 HOH HOH . D 4 HOH A 162 462 125 HOH HOH . D 4 HOH A 163 463 247 HOH HOH . D 4 HOH A 164 464 47 HOH HOH . D 4 HOH A 165 465 227 HOH HOH . D 4 HOH A 166 466 226 HOH HOH . D 4 HOH A 167 467 246 HOH HOH . D 4 HOH A 168 468 260 HOH HOH . D 4 HOH A 169 469 203 HOH HOH . D 4 HOH A 170 470 229 HOH HOH . D 4 HOH A 171 471 208 HOH HOH . D 4 HOH A 172 472 250 HOH HOH . D 4 HOH A 173 473 199 HOH HOH . D 4 HOH A 174 474 63 HOH HOH . D 4 HOH A 175 475 64 HOH HOH . D 4 HOH A 176 476 149 HOH HOH . D 4 HOH A 177 477 178 HOH HOH . D 4 HOH A 178 478 239 HOH HOH . D 4 HOH A 179 479 146 HOH HOH . D 4 HOH A 180 480 253 HOH HOH . D 4 HOH A 181 481 32 HOH HOH . D 4 HOH A 182 482 131 HOH HOH . D 4 HOH A 183 483 126 HOH HOH . D 4 HOH A 184 484 264 HOH HOH . D 4 HOH A 185 485 96 HOH HOH . D 4 HOH A 186 486 180 HOH HOH . D 4 HOH A 187 487 148 HOH HOH . D 4 HOH A 188 488 167 HOH HOH . D 4 HOH A 189 489 33 HOH HOH . D 4 HOH A 190 490 136 HOH HOH . D 4 HOH A 191 491 206 HOH HOH . D 4 HOH A 192 492 56 HOH HOH . D 4 HOH A 193 493 102 HOH HOH . D 4 HOH A 194 494 235 HOH HOH . D 4 HOH A 195 495 209 HOH HOH . D 4 HOH A 196 496 176 HOH HOH . D 4 HOH A 197 497 153 HOH HOH . D 4 HOH A 198 498 191 HOH HOH . D 4 HOH A 199 499 142 HOH HOH . D 4 HOH A 200 500 233 HOH HOH . D 4 HOH A 201 501 255 HOH HOH . D 4 HOH A 202 502 62 HOH HOH . D 4 HOH A 203 503 162 HOH HOH . D 4 HOH A 204 504 76 HOH HOH . D 4 HOH A 205 505 156 HOH HOH . D 4 HOH A 206 506 138 HOH HOH . D 4 HOH A 207 507 225 HOH HOH . D 4 HOH A 208 508 139 HOH HOH . D 4 HOH A 209 509 52 HOH HOH . D 4 HOH A 210 510 197 HOH HOH . D 4 HOH A 211 511 171 HOH HOH . D 4 HOH A 212 512 189 HOH HOH . D 4 HOH A 213 513 262 HOH HOH . D 4 HOH A 214 514 213 HOH HOH . D 4 HOH A 215 515 228 HOH HOH . D 4 HOH A 216 516 75 HOH HOH . D 4 HOH A 217 517 170 HOH HOH . D 4 HOH A 218 518 41 HOH HOH . D 4 HOH A 219 519 234 HOH HOH . D 4 HOH A 220 520 223 HOH HOH . D 4 HOH A 221 521 117 HOH HOH . D 4 HOH A 222 522 129 HOH HOH . D 4 HOH A 223 523 40 HOH HOH . D 4 HOH A 224 524 65 HOH HOH . D 4 HOH A 225 525 238 HOH HOH . D 4 HOH A 226 526 240 HOH HOH . D 4 HOH A 227 527 169 HOH HOH . D 4 HOH A 228 528 230 HOH HOH . D 4 HOH A 229 529 163 HOH HOH . D 4 HOH A 230 530 92 HOH HOH . D 4 HOH A 231 531 140 HOH HOH . D 4 HOH A 232 532 218 HOH HOH . D 4 HOH A 233 533 190 HOH HOH . D 4 HOH A 234 534 224 HOH HOH . D 4 HOH A 235 535 219 HOH HOH . D 4 HOH A 236 536 101 HOH HOH . D 4 HOH A 237 537 69 HOH HOH . D 4 HOH A 238 538 164 HOH HOH . D 4 HOH A 239 539 111 HOH HOH . D 4 HOH A 240 540 27 HOH HOH . D 4 HOH A 241 541 55 HOH HOH . D 4 HOH A 242 542 207 HOH HOH . D 4 HOH A 243 543 86 HOH HOH . D 4 HOH A 244 544 80 HOH HOH . D 4 HOH A 245 545 214 HOH HOH . D 4 HOH A 246 546 105 HOH HOH . D 4 HOH A 247 547 84 HOH HOH . D 4 HOH A 248 548 261 HOH HOH . D 4 HOH A 249 549 127 HOH HOH . D 4 HOH A 250 550 254 HOH HOH . D 4 HOH A 251 551 145 HOH HOH . D 4 HOH A 252 552 257 HOH HOH . D 4 HOH A 253 553 211 HOH HOH . D 4 HOH A 254 554 122 HOH HOH . D 4 HOH A 255 555 59 HOH HOH . D 4 HOH A 256 556 210 HOH HOH . D 4 HOH A 257 557 256 HOH HOH . D 4 HOH A 258 558 124 HOH HOH . D 4 HOH A 259 559 82 HOH HOH . D 4 HOH A 260 560 251 HOH HOH . D 4 HOH A 261 561 187 HOH HOH . D 4 HOH A 262 562 157 HOH HOH . D 4 HOH A 263 563 249 HOH HOH . D 4 HOH A 264 564 108 HOH HOH . D 4 HOH A 265 565 263 HOH HOH . D 4 HOH A 266 566 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 30.176 -44.607 94.482 1 34.7 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . C 3 31.351 -44.983 95.162 1 57.61 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . C 3 30.48 -43.675 93.324 1 36.79 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . C 3 30.382 -44.426 92.139 1 74.44 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . C 3 29.47 -42.535 93.264 1 30.05 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . C 3 30.041 -41.464 92.552 1 68.78 ? O3 GOL 202 A 1 HETATM 7 H H11 GOL . . . C 3 29.674 -45.499 94.106 1 41.64 ? H11 GOL 202 A 1 HETATM 8 H H12 GOL . . . C 3 29.498 -44.111 95.177 1 41.64 ? H12 GOL 202 A 1 HETATM 9 H HO1 GOL . . . C 3 31.116 -45.53 95.941 1 69.13 ? HO1 GOL 202 A 1 HETATM 10 H H2 GOL . . . C 3 31.484 -43.267 93.439 1 44.15 ? H2 GOL 202 A 1 HETATM 11 H HO2 GOL . . . C 3 29.472 -44.779 92.049 1 89.33 ? HO2 GOL 202 A 1 HETATM 12 H H31 GOL . . . C 3 28.56 -42.87 92.766 1 36.05 ? H31 GOL 202 A 1 HETATM 13 H H32 GOL . . . C 3 29.21 -42.215 94.273 1 36.05 ? H32 GOL 202 A 1 HETATM 14 H HO3 GOL . . . C 3 29.332 -40.948 92.114 1 82.54 ? HO3 GOL 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #