data_5YOG
#
_model_server_result.job_id            pJmXy1N-AH-vnbcwhgt2Bw 
_model_server_result.datetime_utc      '2024-12-25 02:25:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yog 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5YOG 
#
_exptl.entry_id    5YOG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.63 
_cell.angle_gamma         90 
_cell.entry_id            5YOG 
_cell.length_a            32.607 
_cell.length_b            56.321 
_cell.length_c            41.418 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YOG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             14 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              14 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             93 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              93 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        A 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.07 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 183 n n 
C1 C2 GOL sing 184 n n 
C1 H11 GOL sing 185 n n 
C1 H12 GOL sing 186 n n 
O1 HO1 GOL sing 187 n n 
C2 O2 GOL sing 188 n n 
C2 C3 GOL sing 189 n n 
C2 H2 GOL sing 190 n n 
O2 HO2 GOL sing 191 n n 
C3 O3 GOL sing 192 n n 
C3 H31 GOL sing 193 n n 
C3 H32 GOL sing 194 n n 
O3 HO3 GOL sing 195 n n 
#
_atom_sites.entry_id                     5YOG 
_atom_sites.fract_transf_matrix[1][1]    0.030668 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006314 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017755 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 201 1 FMN FMN . 
C 3 GOL A 1 202 1 GOL GOL . 
D 3 GOL A 1 203 2 GOL GOL . 
E 4 SO4 A 1 204 1 SO4 SO4 . 
F 5 HOH A 1 301 144 HOH HOH . 
F 5 HOH A 2 302 150 HOH HOH . 
F 5 HOH A 3 303 91 HOH HOH . 
F 5 HOH A 4 304 133 HOH HOH . 
F 5 HOH A 5 305 54 HOH HOH . 
F 5 HOH A 6 306 61 HOH HOH . 
F 5 HOH A 7 307 38 HOH HOH . 
F 5 HOH A 8 308 59 HOH HOH . 
F 5 HOH A 9 309 140 HOH HOH . 
F 5 HOH A 10 310 74 HOH HOH . 
F 5 HOH A 11 311 112 HOH HOH . 
F 5 HOH A 12 312 92 HOH HOH . 
F 5 HOH A 13 313 100 HOH HOH . 
F 5 HOH A 14 314 116 HOH HOH . 
F 5 HOH A 15 315 93 HOH HOH . 
F 5 HOH A 16 316 60 HOH HOH . 
F 5 HOH A 17 317 18 HOH HOH . 
F 5 HOH A 18 318 141 HOH HOH . 
F 5 HOH A 19 319 103 HOH HOH . 
F 5 HOH A 20 320 10 HOH HOH . 
F 5 HOH A 21 321 28 HOH HOH . 
F 5 HOH A 22 322 56 HOH HOH . 
F 5 HOH A 23 323 114 HOH HOH . 
F 5 HOH A 24 324 80 HOH HOH . 
F 5 HOH A 25 325 88 HOH HOH . 
F 5 HOH A 26 326 32 HOH HOH . 
F 5 HOH A 27 327 83 HOH HOH . 
F 5 HOH A 28 328 16 HOH HOH . 
F 5 HOH A 29 329 30 HOH HOH . 
F 5 HOH A 30 330 111 HOH HOH . 
F 5 HOH A 31 331 76 HOH HOH . 
F 5 HOH A 32 332 126 HOH HOH . 
F 5 HOH A 33 333 50 HOH HOH . 
F 5 HOH A 34 334 48 HOH HOH . 
F 5 HOH A 35 335 67 HOH HOH . 
F 5 HOH A 36 336 35 HOH HOH . 
F 5 HOH A 37 337 94 HOH HOH . 
F 5 HOH A 38 338 26 HOH HOH . 
F 5 HOH A 39 339 71 HOH HOH . 
F 5 HOH A 40 340 135 HOH HOH . 
F 5 HOH A 41 341 113 HOH HOH . 
F 5 HOH A 42 342 17 HOH HOH . 
F 5 HOH A 43 343 75 HOH HOH . 
F 5 HOH A 44 344 125 HOH HOH . 
F 5 HOH A 45 345 2 HOH HOH . 
F 5 HOH A 46 346 138 HOH HOH . 
F 5 HOH A 47 347 6 HOH HOH . 
F 5 HOH A 48 348 21 HOH HOH . 
F 5 HOH A 49 349 128 HOH HOH . 
F 5 HOH A 50 350 146 HOH HOH . 
F 5 HOH A 51 351 8 HOH HOH . 
F 5 HOH A 52 352 82 HOH HOH . 
F 5 HOH A 53 353 55 HOH HOH . 
F 5 HOH A 54 354 105 HOH HOH . 
F 5 HOH A 55 355 12 HOH HOH . 
F 5 HOH A 56 356 7 HOH HOH . 
F 5 HOH A 57 357 1 HOH HOH . 
F 5 HOH A 58 358 3 HOH HOH . 
F 5 HOH A 59 359 31 HOH HOH . 
F 5 HOH A 60 360 154 HOH HOH . 
F 5 HOH A 61 361 14 HOH HOH . 
F 5 HOH A 62 362 22 HOH HOH . 
F 5 HOH A 63 363 36 HOH HOH . 
F 5 HOH A 64 364 9 HOH HOH . 
F 5 HOH A 65 365 40 HOH HOH . 
F 5 HOH A 66 366 45 HOH HOH . 
F 5 HOH A 67 367 77 HOH HOH . 
F 5 HOH A 68 368 19 HOH HOH . 
F 5 HOH A 69 369 20 HOH HOH . 
F 5 HOH A 70 370 41 HOH HOH . 
F 5 HOH A 71 371 148 HOH HOH . 
F 5 HOH A 72 372 120 HOH HOH . 
F 5 HOH A 73 373 47 HOH HOH . 
F 5 HOH A 74 374 57 HOH HOH . 
F 5 HOH A 75 375 44 HOH HOH . 
F 5 HOH A 76 376 62 HOH HOH . 
F 5 HOH A 77 377 15 HOH HOH . 
F 5 HOH A 78 378 63 HOH HOH . 
F 5 HOH A 79 379 39 HOH HOH . 
F 5 HOH A 80 380 24 HOH HOH . 
F 5 HOH A 81 381 5 HOH HOH . 
F 5 HOH A 82 382 33 HOH HOH . 
F 5 HOH A 83 383 4 HOH HOH . 
F 5 HOH A 84 384 13 HOH HOH . 
F 5 HOH A 85 385 152 HOH HOH . 
F 5 HOH A 86 386 51 HOH HOH . 
F 5 HOH A 87 387 27 HOH HOH . 
F 5 HOH A 88 388 23 HOH HOH . 
F 5 HOH A 89 389 72 HOH HOH . 
F 5 HOH A 90 390 134 HOH HOH . 
F 5 HOH A 91 391 42 HOH HOH . 
F 5 HOH A 92 392 25 HOH HOH . 
F 5 HOH A 93 393 49 HOH HOH . 
F 5 HOH A 94 394 73 HOH HOH . 
F 5 HOH A 95 395 64 HOH HOH . 
F 5 HOH A 96 396 69 HOH HOH . 
F 5 HOH A 97 397 87 HOH HOH . 
F 5 HOH A 98 398 65 HOH HOH . 
F 5 HOH A 99 399 53 HOH HOH . 
F 5 HOH A 100 400 90 HOH HOH . 
F 5 HOH A 101 401 139 HOH HOH . 
F 5 HOH A 102 402 149 HOH HOH . 
F 5 HOH A 103 403 11 HOH HOH . 
F 5 HOH A 104 404 118 HOH HOH . 
F 5 HOH A 105 405 34 HOH HOH . 
F 5 HOH A 106 406 145 HOH HOH . 
F 5 HOH A 107 407 78 HOH HOH . 
F 5 HOH A 108 408 106 HOH HOH . 
F 5 HOH A 109 409 29 HOH HOH . 
F 5 HOH A 110 410 58 HOH HOH . 
F 5 HOH A 111 411 43 HOH HOH . 
F 5 HOH A 112 412 142 HOH HOH . 
F 5 HOH A 113 413 137 HOH HOH . 
F 5 HOH A 114 414 107 HOH HOH . 
F 5 HOH A 115 415 119 HOH HOH . 
F 5 HOH A 116 416 153 HOH HOH . 
F 5 HOH A 117 417 99 HOH HOH . 
F 5 HOH A 118 418 143 HOH HOH . 
F 5 HOH A 119 419 129 HOH HOH . 
F 5 HOH A 120 420 97 HOH HOH . 
F 5 HOH A 121 421 131 HOH HOH . 
F 5 HOH A 122 422 109 HOH HOH . 
F 5 HOH A 123 423 123 HOH HOH . 
F 5 HOH A 124 424 147 HOH HOH . 
F 5 HOH A 125 425 104 HOH HOH . 
F 5 HOH A 126 426 151 HOH HOH . 
F 5 HOH A 127 427 98 HOH HOH . 
F 5 HOH A 128 428 101 HOH HOH . 
F 5 HOH A 129 429 130 HOH HOH . 
F 5 HOH A 130 430 122 HOH HOH . 
F 5 HOH A 131 431 46 HOH HOH . 
F 5 HOH A 132 432 117 HOH HOH . 
F 5 HOH A 133 433 84 HOH HOH . 
F 5 HOH A 134 434 85 HOH HOH . 
F 5 HOH A 135 435 124 HOH HOH . 
F 5 HOH A 136 436 81 HOH HOH . 
F 5 HOH A 137 437 155 HOH HOH . 
F 5 HOH A 138 438 108 HOH HOH . 
F 5 HOH A 139 439 37 HOH HOH . 
F 5 HOH A 140 440 66 HOH HOH . 
F 5 HOH A 141 441 96 HOH HOH . 
F 5 HOH A 142 442 89 HOH HOH . 
F 5 HOH A 143 443 79 HOH HOH . 
F 5 HOH A 144 444 110 HOH HOH . 
F 5 HOH A 145 445 115 HOH HOH . 
F 5 HOH A 146 446 95 HOH HOH . 
F 5 HOH A 147 447 156 HOH HOH . 
F 5 HOH A 148 448 68 HOH HOH . 
F 5 HOH A 149 449 136 HOH HOH . 
F 5 HOH A 150 450 86 HOH HOH . 
F 5 HOH A 151 451 70 HOH HOH . 
F 5 HOH A 152 452 121 HOH HOH . 
F 5 HOH A 153 453 132 HOH HOH . 
F 5 HOH A 154 454 102 HOH HOH . 
F 5 HOH A 155 455 52 HOH HOH . 
F 5 HOH A 156 456 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 38.783 0.621 -7.377 1 60.12 ? C1 GOL 202 A 1 
HETATM 2 O O1 GOL . . . C 3 38.266 -0.66 -7.127 1 67.44 ? O1 GOL 202 A 1 
HETATM 3 C C2 GOL . . . C 3 38.2 1.544 -6.312 1 47.37 ? C2 GOL 202 A 1 
HETATM 4 O O2 GOL . . . C 3 39.083 2.512 -5.752 1 21.49 ? O2 GOL 202 A 1 
HETATM 5 C C3 GOL . . . C 3 36.998 2.236 -6.897 1 28.18 ? C3 GOL 202 A 1 
HETATM 6 O O3 GOL . . . C 3 35.886 1.672 -6.267 1 17.83 ? O3 GOL 202 A 1 
HETATM 7 H H11 GOL . . . C 3 38.493 0.959 -8.372 1 72.14 ? H11 GOL 202 A 1 
HETATM 8 H H12 GOL . . . C 3 39.871 0.609 -7.314 1 72.14 ? H12 GOL 202 A 1 
HETATM 9 H HO1 GOL . . . C 3 38.563 -1.275 -7.829 1 80.92 ? HO1 GOL 202 A 1 
HETATM 10 H H2 GOL . . . C 3 37.84 0.908 -5.503 1 56.84 ? H2 GOL 202 A 1 
HETATM 11 H HO2 GOL . . . C 3 39.365 3.14 -6.45 1 25.78 ? HO2 GOL 202 A 1 
HETATM 12 H H31 GOL . . . C 3 37.044 3.308 -6.704 1 33.82 ? H31 GOL 202 A 1 
HETATM 13 H H32 GOL . . . C 3 36.951 2.073 -7.974 1 33.82 ? H32 GOL 202 A 1 
HETATM 14 H HO3 GOL . . . C 3 35.135 1.642 -6.895 1 21.4 ? HO3 GOL 202 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#