data_5YOV # _model_server_result.job_id quweNuv4IJIRgUUp_FioWA _model_server_result.datetime_utc '2024-12-27 01:00:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5YOV # _exptl.entry_id 5YOV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.506 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{R})-4-cyclopentyl-~{N}-(2,4-dimethylphenyl)-1,3-dimethyl-2-oxidanylidene-3~{H}-quinoxaline-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YOV _cell.length_a 32.34 _cell.length_b 47.435 _cell.length_c 78.926 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YOV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H29 N3 O2' _chem_comp.formula_weight 391.506 _chem_comp.id 8XR _chem_comp.mon_nstd_flag . _chem_comp.name (3~{R})-4-cyclopentyl-~{N}-(2,4-dimethylphenyl)-1,3-dimethyl-2-oxidanylidene-3~{H}-quinoxaline-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C08 8XR sing 1 n n C15 C02 8XR sing 2 n n C15 N16 8XR sing 3 n n C15 O18 8XR doub 4 n n C17 N16 8XR sing 5 n n C17 C19 8XR doub 6 n y C17 C23 8XR sing 7 n y C20 C21 8XR doub 8 n y C20 C19 8XR sing 9 n y C21 C22 8XR sing 10 n y C21 C29 8XR sing 11 n n C22 C23 8XR doub 12 n y C24 C14 8XR sing 13 n n C24 C25 8XR sing 14 n n C26 C25 8XR sing 15 n n C26 C27 8XR sing 16 n n C28 C19 8XR sing 17 n n C01 C02 8XR doub 18 n y C01 C06 8XR sing 19 n y C02 C03 8XR sing 20 n y C03 C04 8XR doub 21 n y C04 C05 8XR sing 22 n y C04 N07 8XR sing 23 n n C05 C06 8XR doub 24 n y C05 N10 8XR sing 25 n n N07 C08 8XR sing 26 n n N07 C14 8XR sing 27 n n C09 N10 8XR sing 28 n n C09 O11 8XR doub 29 n n N10 C12 8XR sing 30 n n C14 C27 8XR sing 31 n n C13 H1 8XR sing 32 n n C13 H2 8XR sing 33 n n C13 H3 8XR sing 34 n n C20 H4 8XR sing 35 n n C22 H5 8XR sing 36 n n C24 H6 8XR sing 37 n n C24 H7 8XR sing 38 n n C26 H8 8XR sing 39 n n C26 H9 8XR sing 40 n n C28 H10 8XR sing 41 n n C28 H11 8XR sing 42 n n C28 H12 8XR sing 43 n n C01 H13 8XR sing 44 n n C03 H14 8XR sing 45 n n C06 H15 8XR sing 46 n n C12 H19 8XR sing 47 n n C12 H20 8XR sing 48 n n C12 H21 8XR sing 49 n n C14 H22 8XR sing 50 n n N16 H23 8XR sing 51 n n C23 H24 8XR sing 52 n n C25 H25 8XR sing 53 n n C25 H26 8XR sing 54 n n C27 H27 8XR sing 55 n n C27 H28 8XR sing 56 n n C29 H29 8XR sing 57 n n C29 H30 8XR sing 58 n n C29 H31 8XR sing 59 n n C08 C09 8XR sing 60 n n C08 H16 8XR sing 61 n n # _atom_sites.entry_id 5YOV _atom_sites.fract_transf_matrix[1][1] 0.030921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021081 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8XR A 1 201 1 8XR LIG . C 3 HOH A 1 301 23 HOH HOH . C 3 HOH A 2 302 136 HOH HOH . C 3 HOH A 3 303 2 HOH HOH . C 3 HOH A 4 304 1 HOH HOH . C 3 HOH A 5 305 7 HOH HOH . C 3 HOH A 6 306 116 HOH HOH . C 3 HOH A 7 307 101 HOH HOH . C 3 HOH A 8 308 40 HOH HOH . C 3 HOH A 9 309 132 HOH HOH . C 3 HOH A 10 310 68 HOH HOH . C 3 HOH A 11 311 117 HOH HOH . C 3 HOH A 12 312 67 HOH HOH . C 3 HOH A 13 313 147 HOH HOH . C 3 HOH A 14 314 74 HOH HOH . C 3 HOH A 15 315 4 HOH HOH . C 3 HOH A 16 316 43 HOH HOH . C 3 HOH A 17 317 39 HOH HOH . C 3 HOH A 18 318 105 HOH HOH . C 3 HOH A 19 319 87 HOH HOH . C 3 HOH A 20 320 112 HOH HOH . C 3 HOH A 21 321 65 HOH HOH . C 3 HOH A 22 322 13 HOH HOH . C 3 HOH A 23 323 26 HOH HOH . C 3 HOH A 24 324 134 HOH HOH . C 3 HOH A 25 325 81 HOH HOH . C 3 HOH A 26 326 14 HOH HOH . C 3 HOH A 27 327 21 HOH HOH . C 3 HOH A 28 328 3 HOH HOH . C 3 HOH A 29 329 31 HOH HOH . C 3 HOH A 30 330 100 HOH HOH . C 3 HOH A 31 331 107 HOH HOH . C 3 HOH A 32 332 144 HOH HOH . C 3 HOH A 33 333 95 HOH HOH . C 3 HOH A 34 334 55 HOH HOH . C 3 HOH A 35 335 47 HOH HOH . C 3 HOH A 36 336 9 HOH HOH . C 3 HOH A 37 337 108 HOH HOH . C 3 HOH A 38 338 17 HOH HOH . C 3 HOH A 39 339 91 HOH HOH . C 3 HOH A 40 340 56 HOH HOH . C 3 HOH A 41 341 71 HOH HOH . C 3 HOH A 42 342 53 HOH HOH . C 3 HOH A 43 343 92 HOH HOH . C 3 HOH A 44 344 18 HOH HOH . C 3 HOH A 45 345 20 HOH HOH . C 3 HOH A 46 346 85 HOH HOH . C 3 HOH A 47 347 10 HOH HOH . C 3 HOH A 48 348 46 HOH HOH . C 3 HOH A 49 349 34 HOH HOH . C 3 HOH A 50 350 36 HOH HOH . C 3 HOH A 51 351 139 HOH HOH . C 3 HOH A 52 352 61 HOH HOH . C 3 HOH A 53 353 58 HOH HOH . C 3 HOH A 54 354 70 HOH HOH . C 3 HOH A 55 355 30 HOH HOH . C 3 HOH A 56 356 19 HOH HOH . C 3 HOH A 57 357 25 HOH HOH . C 3 HOH A 58 358 35 HOH HOH . C 3 HOH A 59 359 62 HOH HOH . C 3 HOH A 60 360 8 HOH HOH . C 3 HOH A 61 361 37 HOH HOH . C 3 HOH A 62 362 44 HOH HOH . C 3 HOH A 63 363 140 HOH HOH . C 3 HOH A 64 364 148 HOH HOH . C 3 HOH A 65 365 141 HOH HOH . C 3 HOH A 66 366 89 HOH HOH . C 3 HOH A 67 367 123 HOH HOH . C 3 HOH A 68 368 42 HOH HOH . C 3 HOH A 69 369 49 HOH HOH . C 3 HOH A 70 370 45 HOH HOH . C 3 HOH A 71 371 93 HOH HOH . C 3 HOH A 72 372 97 HOH HOH . C 3 HOH A 73 373 6 HOH HOH . C 3 HOH A 74 374 77 HOH HOH . C 3 HOH A 75 375 126 HOH HOH . C 3 HOH A 76 376 109 HOH HOH . C 3 HOH A 77 377 48 HOH HOH . C 3 HOH A 78 378 96 HOH HOH . C 3 HOH A 79 379 24 HOH HOH . C 3 HOH A 80 380 41 HOH HOH . C 3 HOH A 81 381 28 HOH HOH . C 3 HOH A 82 382 11 HOH HOH . C 3 HOH A 83 383 94 HOH HOH . C 3 HOH A 84 384 129 HOH HOH . C 3 HOH A 85 385 73 HOH HOH . C 3 HOH A 86 386 131 HOH HOH . C 3 HOH A 87 387 90 HOH HOH . C 3 HOH A 88 388 106 HOH HOH . C 3 HOH A 89 389 38 HOH HOH . C 3 HOH A 90 390 15 HOH HOH . C 3 HOH A 91 391 79 HOH HOH . C 3 HOH A 92 392 128 HOH HOH . C 3 HOH A 93 393 5 HOH HOH . C 3 HOH A 94 394 22 HOH HOH . C 3 HOH A 95 395 27 HOH HOH . C 3 HOH A 96 396 124 HOH HOH . C 3 HOH A 97 397 32 HOH HOH . C 3 HOH A 98 398 113 HOH HOH . C 3 HOH A 99 399 135 HOH HOH . C 3 HOH A 100 400 130 HOH HOH . C 3 HOH A 101 401 66 HOH HOH . C 3 HOH A 102 402 102 HOH HOH . C 3 HOH A 103 403 16 HOH HOH . C 3 HOH A 104 404 86 HOH HOH . C 3 HOH A 105 405 33 HOH HOH . C 3 HOH A 106 406 54 HOH HOH . C 3 HOH A 107 407 59 HOH HOH . C 3 HOH A 108 408 88 HOH HOH . C 3 HOH A 109 409 12 HOH HOH . C 3 HOH A 110 410 29 HOH HOH . C 3 HOH A 111 411 122 HOH HOH . C 3 HOH A 112 412 104 HOH HOH . C 3 HOH A 113 413 64 HOH HOH . C 3 HOH A 114 414 84 HOH HOH . C 3 HOH A 115 415 111 HOH HOH . C 3 HOH A 116 416 50 HOH HOH . C 3 HOH A 117 417 72 HOH HOH . C 3 HOH A 118 418 80 HOH HOH . C 3 HOH A 119 419 149 HOH HOH . C 3 HOH A 120 420 51 HOH HOH . C 3 HOH A 121 421 52 HOH HOH . C 3 HOH A 122 422 125 HOH HOH . C 3 HOH A 123 423 133 HOH HOH . C 3 HOH A 124 424 103 HOH HOH . C 3 HOH A 125 425 63 HOH HOH . C 3 HOH A 126 426 137 HOH HOH . C 3 HOH A 127 427 60 HOH HOH . C 3 HOH A 128 428 121 HOH HOH . C 3 HOH A 129 429 69 HOH HOH . C 3 HOH A 130 430 143 HOH HOH . C 3 HOH A 131 431 75 HOH HOH . C 3 HOH A 132 432 78 HOH HOH . C 3 HOH A 133 433 142 HOH HOH . C 3 HOH A 134 434 118 HOH HOH . C 3 HOH A 135 435 82 HOH HOH . C 3 HOH A 136 436 114 HOH HOH . C 3 HOH A 137 437 120 HOH HOH . C 3 HOH A 138 438 83 HOH HOH . C 3 HOH A 139 439 99 HOH HOH . C 3 HOH A 140 440 145 HOH HOH . C 3 HOH A 141 441 138 HOH HOH . C 3 HOH A 142 442 127 HOH HOH . C 3 HOH A 143 443 57 HOH HOH . C 3 HOH A 144 444 110 HOH HOH . C 3 HOH A 145 445 115 HOH HOH . C 3 HOH A 146 446 146 HOH HOH . C 3 HOH A 147 447 151 HOH HOH . C 3 HOH A 148 448 98 HOH HOH . C 3 HOH A 149 449 119 HOH HOH . C 3 HOH A 150 450 150 HOH HOH . C 3 HOH A 151 451 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 8XR . . . B 2 -19.971 -8.094 79.809 1 28.53 ? C13 8XR 201 A 1 HETATM 2 C C15 8XR . . . B 2 -26.067 -8.214 79.369 1 38.53 ? C15 8XR 201 A 1 HETATM 3 C C17 8XR . . . B 2 -26.02 -7.954 76.958 1 43.16 ? C17 8XR 201 A 1 HETATM 4 C C20 8XR . . . B 2 -24.92 -8.147 74.597 1 44.39 ? C20 8XR 201 A 1 HETATM 5 C C21 8XR . . . B 2 -24.798 -6.657 74.514 1 39.79 ? C21 8XR 201 A 1 HETATM 6 C C22 8XR . . . B 2 -25.298 -5.83 75.646 1 45.4 ? C22 8XR 201 A 1 HETATM 7 C C24 8XR . . . B 2 -22.037 -7.875 76.251 1 30.16 ? C24 8XR 201 A 1 HETATM 8 C C26 8XR . . . B 2 -20.027 -8.072 75.162 1 33.73 ? C26 8XR 201 A 1 HETATM 9 C C28 8XR . . . B 2 -25.592 -10.303 75.901 1 40.76 ? C28 8XR 201 A 1 HETATM 10 C C01 8XR . . . B 2 -24.931 -6.41 80.652 1 32.96 ? C01 8XR 201 A 1 HETATM 11 C C02 8XR . . . B 2 -24.893 -7.377 79.53 1 32.19 ? C02 8XR 201 A 1 HETATM 12 C C03 8XR . . . B 2 -23.735 -7.69 78.705 1 33.22 ? C03 8XR 201 A 1 HETATM 13 C C04 8XR . . . B 2 -22.509 -6.847 78.979 1 26.67 ? C04 8XR 201 A 1 HETATM 14 C C05 8XR . . . B 2 -22.546 -5.879 80.028 1 28.1 ? C05 8XR 201 A 1 HETATM 15 C C06 8XR . . . B 2 -23.758 -5.618 80.895 1 29.26 ? C06 8XR 201 A 1 HETATM 16 N N07 8XR . . . B 2 -21.244 -7.085 78.2 1 31.38 ? N07 8XR 201 A 1 HETATM 17 C C08 8XR . . . B 2 -20.243 -6.927 78.764 1 25.12 ? C08 8XR 201 A 1 HETATM 18 C C09 8XR . . . B 2 -20.195 -5.385 79.695 1 12.47 ? C09 8XR 201 A 1 HETATM 19 N N10 8XR . . . B 2 -21.319 -5.056 80.221 1 18.84 ? N10 8XR 201 A 1 HETATM 20 O O11 8XR . . . B 2 -19.222 -4.806 79.8 1 19.46 ? O11 8XR 201 A 1 HETATM 21 C C12 8XR . . . B 2 -21.476 -3.921 80.994 1 21.9 ? C12 8XR 201 A 1 HETATM 22 C C14 8XR . . . B 2 -21.333 -8.229 77.261 1 33.48 ? C14 8XR 201 A 1 HETATM 23 N N16 8XR . . . B 2 -26.587 -8.535 78.111 1 48.74 ? N16 8XR 201 A 1 HETATM 24 O O18 8XR . . . B 2 -26.402 -8.667 80.436 1 41.51 ? O18 8XR 201 A 1 HETATM 25 C C19 8XR . . . B 2 -25.5 -8.804 75.831 1 43.52 ? C19 8XR 201 A 1 HETATM 26 C C23 8XR . . . B 2 -25.865 -6.479 76.832 1 46.07 ? C23 8XR 201 A 1 HETATM 27 C C25 8XR . . . B 2 -20.893 -7.099 75.394 1 36.62 ? C25 8XR 201 A 1 HETATM 28 C C27 8XR . . . B 2 -19.967 -8.698 76.561 1 34.48 ? C27 8XR 201 A 1 HETATM 29 C C29 8XR . . . B 2 -24.23 -6.002 73.283 1 43.31 ? C29 8XR 201 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 29 #