data_5YP6 # _model_server_result.job_id C0qSNqX0VTAeHku3aPs0TA _model_server_result.datetime_utc '2024-11-14 13:41:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5YP6 # _exptl.entry_id 5YP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 528.586 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[3'-cyano-4'-(2-methylpropyl)-2-(trifluoromethyl)biphenyl-4-yl]-2-[4-(ethylsulfonyl)phenyl]acetamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YP6 _cell.length_a 62.201 _cell.length_b 62.201 _cell.length_c 154.822 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H27 F3 N2 O3 S' _chem_comp.formula_weight 528.586 _chem_comp.id 4CX _chem_comp.mon_nstd_flag . _chem_comp.name "N-[3'-cyano-4'-(2-methylpropyl)-2-(trifluoromethyl)biphenyl-4-yl]-2-[4-(ethylsulfonyl)phenyl]acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C23 4CX trip 1 n n F2 C26 4CX sing 2 n n C23 C21 4CX sing 3 n n F1 C26 4CX sing 4 n n O2 S 4CX doub 5 n n C26 F3 4CX sing 6 n n C26 C24 4CX sing 7 n n C1 C2 4CX sing 8 n n C21 C22 4CX doub 9 n y C21 C16 4CX sing 10 n y C17 C16 4CX sing 11 n n C17 C18 4CX sing 12 n n C22 C13 4CX sing 13 n y C2 S 4CX sing 14 n n C16 C15 4CX doub 15 n y S O1 4CX doub 16 n n S C3 4CX sing 17 n n C20 C18 4CX sing 18 n n C24 C25 4CX doub 19 n y C24 C12 4CX sing 20 n y C13 C12 4CX sing 21 n n C13 C14 4CX doub 22 n y C18 C19 4CX sing 23 n n C15 C14 4CX sing 24 n y C28 C3 4CX doub 25 n y C28 C27 4CX sing 26 n y C25 C9 4CX sing 27 n y C12 C11 4CX doub 28 n y C3 C4 4CX sing 29 n y C27 C6 4CX doub 30 n y C9 N1 4CX sing 31 n n C9 C10 4CX doub 32 n y C11 C10 4CX sing 33 n y C4 C5 4CX doub 34 n y N1 C8 4CX sing 35 n n C6 C5 4CX sing 36 n y C6 C7 4CX sing 37 n n C8 O3 4CX doub 38 n n C8 C7 4CX sing 39 n n N1 H1 4CX sing 40 n n C4 H2 4CX sing 41 n n C5 H3 4CX sing 42 n n C7 H4 4CX sing 43 n n C7 H5 4CX sing 44 n n C10 H6 4CX sing 45 n n C15 H7 4CX sing 46 n n C17 H8 4CX sing 47 n n C17 H9 4CX sing 48 n n C20 H10 4CX sing 49 n n C20 H11 4CX sing 50 n n C20 H12 4CX sing 51 n n C22 H13 4CX sing 52 n n C28 H14 4CX sing 53 n n C18 H15 4CX sing 54 n n C19 H16 4CX sing 55 n n C19 H17 4CX sing 56 n n C19 H18 4CX sing 57 n n C14 H19 4CX sing 58 n n C25 H20 4CX sing 59 n n C11 H21 4CX sing 60 n n C27 H22 4CX sing 61 n n C2 H23 4CX sing 62 n n C2 H24 4CX sing 63 n n C1 H25 4CX sing 64 n n C1 H26 4CX sing 65 n n C1 H27 4CX sing 66 n n # _atom_sites.entry_id 5YP6 _atom_sites.fract_transf_matrix[1][1] 0.016077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4CX A 1 601 1 4CX LIG . D 4 HOH A 1 701 22 HOH HOH . D 4 HOH A 2 702 47 HOH HOH . D 4 HOH A 3 703 100 HOH HOH . D 4 HOH A 4 704 61 HOH HOH . D 4 HOH A 5 705 45 HOH HOH . D 4 HOH A 6 706 56 HOH HOH . D 4 HOH A 7 707 76 HOH HOH . D 4 HOH A 8 708 63 HOH HOH . D 4 HOH A 9 709 70 HOH HOH . D 4 HOH A 10 710 34 HOH HOH . D 4 HOH A 11 711 18 HOH HOH . D 4 HOH A 12 712 9 HOH HOH . D 4 HOH A 13 713 28 HOH HOH . D 4 HOH A 14 714 37 HOH HOH . D 4 HOH A 15 715 23 HOH HOH . D 4 HOH A 16 716 26 HOH HOH . D 4 HOH A 17 717 62 HOH HOH . D 4 HOH A 18 718 16 HOH HOH . D 4 HOH A 19 719 57 HOH HOH . D 4 HOH A 20 720 79 HOH HOH . D 4 HOH A 21 721 38 HOH HOH . D 4 HOH A 22 722 35 HOH HOH . D 4 HOH A 23 723 19 HOH HOH . D 4 HOH A 24 724 85 HOH HOH . D 4 HOH A 25 725 40 HOH HOH . D 4 HOH A 26 726 86 HOH HOH . D 4 HOH A 27 727 50 HOH HOH . D 4 HOH A 28 728 49 HOH HOH . D 4 HOH A 29 729 97 HOH HOH . D 4 HOH A 30 730 83 HOH HOH . D 4 HOH A 31 731 6 HOH HOH . D 4 HOH A 32 732 91 HOH HOH . D 4 HOH A 33 733 39 HOH HOH . D 4 HOH A 34 734 84 HOH HOH . D 4 HOH A 35 735 60 HOH HOH . D 4 HOH A 36 736 17 HOH HOH . D 4 HOH A 37 737 27 HOH HOH . D 4 HOH A 38 738 1 HOH HOH . D 4 HOH A 39 739 55 HOH HOH . D 4 HOH A 40 740 12 HOH HOH . D 4 HOH A 41 741 54 HOH HOH . D 4 HOH A 42 742 29 HOH HOH . D 4 HOH A 43 743 66 HOH HOH . D 4 HOH A 44 744 24 HOH HOH . D 4 HOH A 45 745 10 HOH HOH . D 4 HOH A 46 746 48 HOH HOH . D 4 HOH A 47 747 32 HOH HOH . D 4 HOH A 48 748 15 HOH HOH . D 4 HOH A 49 749 72 HOH HOH . D 4 HOH A 50 750 93 HOH HOH . D 4 HOH A 51 751 2 HOH HOH . D 4 HOH A 52 752 51 HOH HOH . D 4 HOH A 53 753 67 HOH HOH . D 4 HOH A 54 754 31 HOH HOH . D 4 HOH A 55 755 87 HOH HOH . D 4 HOH A 56 756 94 HOH HOH . D 4 HOH A 57 757 77 HOH HOH . D 4 HOH A 58 758 99 HOH HOH . D 4 HOH A 59 759 65 HOH HOH . D 4 HOH A 60 760 14 HOH HOH . D 4 HOH A 61 761 59 HOH HOH . D 4 HOH A 62 762 80 HOH HOH . D 4 HOH A 63 763 30 HOH HOH . D 4 HOH A 64 764 89 HOH HOH . D 4 HOH A 65 765 46 HOH HOH . D 4 HOH A 66 766 71 HOH HOH . D 4 HOH A 67 767 33 HOH HOH . D 4 HOH A 68 768 8 HOH HOH . D 4 HOH A 69 769 21 HOH HOH . D 4 HOH A 70 770 53 HOH HOH . D 4 HOH A 71 771 92 HOH HOH . D 4 HOH A 72 772 11 HOH HOH . D 4 HOH A 73 773 3 HOH HOH . D 4 HOH A 74 774 20 HOH HOH . D 4 HOH A 75 775 88 HOH HOH . D 4 HOH A 76 776 68 HOH HOH . D 4 HOH A 77 777 25 HOH HOH . D 4 HOH A 78 778 41 HOH HOH . D 4 HOH A 79 779 7 HOH HOH . D 4 HOH A 80 780 64 HOH HOH . D 4 HOH A 81 781 4 HOH HOH . D 4 HOH A 82 782 58 HOH HOH . D 4 HOH A 83 783 81 HOH HOH . D 4 HOH A 84 784 90 HOH HOH . D 4 HOH A 85 785 13 HOH HOH . D 4 HOH A 86 786 5 HOH HOH . D 4 HOH A 87 787 43 HOH HOH . D 4 HOH A 88 788 42 HOH HOH . D 4 HOH A 89 789 78 HOH HOH . D 4 HOH A 90 790 69 HOH HOH . D 4 HOH A 91 791 96 HOH HOH . D 4 HOH A 92 792 82 HOH HOH . D 4 HOH A 93 793 74 HOH HOH . D 4 HOH A 94 794 73 HOH HOH . D 4 HOH A 95 795 75 HOH HOH . D 4 HOH A 96 796 36 HOH HOH . D 4 HOH A 97 797 95 HOH HOH . D 4 HOH A 98 798 44 HOH HOH . D 4 HOH A 99 799 98 HOH HOH . D 4 HOH A 100 800 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 4CX . . . C 3 27.264 -3.382 -12.305 1 26.35 ? N1 4CX 601 A 1 HETATM 2 C C4 4CX . . . C 3 24.984 1.673 -12.338 1 25.65 ? C4 4CX 601 A 1 HETATM 3 C C5 4CX . . . C 3 25.56 0.715 -11.509 1 25.75 ? C5 4CX 601 A 1 HETATM 4 C C6 4CX . . . C 3 26.476 -0.194 -12.035 1 25.76 ? C6 4CX 601 A 1 HETATM 5 C C7 4CX . . . C 3 27.107 -1.264 -11.145 1 26.07 ? C7 4CX 601 A 1 HETATM 6 C C8 4CX . . . C 3 26.473 -2.606 -11.553 1 25.99 ? C8 4CX 601 A 1 HETATM 7 C C10 4CX . . . C 3 26.031 -5.446 -12.143 1 26.46 ? C10 4CX 601 A 1 HETATM 8 C C13 4CX . . . C 3 25.966 -8.374 -14.369 1 25.88 ? C13 4CX 601 A 1 HETATM 9 C C15 4CX . . . C 3 26.37 -10.751 -14.222 1 26.35 ? C15 4CX 601 A 1 HETATM 10 C C17 4CX . . . C 3 25.111 -12.463 -15.524 1 27.3 ? C17 4CX 601 A 1 HETATM 11 C C20 4CX . . . C 3 24.241 -14.651 -14.59 1 28.43 ? C20 4CX 601 A 1 HETATM 12 C C21 4CX . . . C 3 24.669 -9.927 -15.693 1 26.36 ? C21 4CX 601 A 1 HETATM 13 C C22 4CX . . . C 3 24.957 -8.611 -15.303 1 26.34 ? C22 4CX 601 A 1 HETATM 14 C C24 4CX . . . C 3 27.222 -6.259 -14.555 1 26.44 ? C24 4CX 601 A 1 HETATM 15 C C26 4CX . . . C 3 27.888 -6.657 -15.885 1 26.87 ? C26 4CX 601 A 1 HETATM 16 C C28 4CX . . . C 3 26.227 0.804 -14.217 1 25.69 ? C28 4CX 601 A 1 HETATM 17 C C18 4CX . . . C 3 24.371 -13.146 -14.362 1 27.88 ? C18 4CX 601 A 1 HETATM 18 C C19 4CX . . . C 3 23.001 -12.508 -14.113 1 27.41 ? C19 4CX 601 A 1 HETATM 19 C C16 4CX . . . C 3 25.375 -11.001 -15.159 1 26.33 ? C16 4CX 601 A 1 HETATM 20 C C23 4CX . . . C 3 23.648 -10.22 -16.652 1 26.5 ? C23 4CX 601 A 1 HETATM 21 N N2 4CX . . . C 3 22.823 -10.394 -17.421 1 26.48 ? N2 4CX 601 A 1 HETATM 22 C C14 4CX . . . C 3 26.664 -9.45 -13.828 1 26.13 ? C14 4CX 601 A 1 HETATM 23 C C12 4CX . . . C 3 26.31 -7.101 -13.909 1 26.39 ? C12 4CX 601 A 1 HETATM 24 C C25 4CX . . . C 3 27.507 -5.013 -13.985 1 26.49 ? C25 4CX 601 A 1 HETATM 25 F F2 4CX . . . C 3 26.955 -6.751 -16.832 1 27.03 ? F2 4CX 601 A 1 HETATM 26 F F3 4CX . . . C 3 28.51 -7.822 -15.753 1 26.88 ? F3 4CX 601 A 1 HETATM 27 F F1 4CX . . . C 3 28.766 -5.731 -16.264 1 27.61 ? F1 4CX 601 A 1 HETATM 28 C C11 4CX . . . C 3 25.735 -6.687 -12.704 1 26.31 ? C11 4CX 601 A 1 HETATM 29 C C9 4CX . . . C 3 26.92 -4.589 -12.792 1 26.43 ? C9 4CX 601 A 1 HETATM 30 O O3 4CX . . . C 3 25.321 -2.876 -11.218 1 25.07 ? O3 4CX 601 A 1 HETATM 31 C C27 4CX . . . C 3 26.803 -0.153 -13.386 1 25.77 ? C27 4CX 601 A 1 HETATM 32 C C3 4CX . . . C 3 25.323 1.722 -13.691 1 25.65 ? C3 4CX 601 A 1 HETATM 33 S S 4CX . . . C 3 24.583 2.914 -14.735 1 25.64 ? S 4CX 601 A 1 HETATM 34 O O1 4CX . . . C 3 24.416 4.212 -13.997 1 25.34 ? O1 4CX 601 A 1 HETATM 35 O O2 4CX . . . C 3 25.417 3.125 -15.971 1 25.12 ? O2 4CX 601 A 1 HETATM 36 C C2 4CX . . . C 3 22.939 2.275 -15.222 1 25.53 ? C2 4CX 601 A 1 HETATM 37 C C1 4CX . . . C 3 23.047 0.848 -15.763 1 25.04 ? C1 4CX 601 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #