data_5YP7 # _model_server_result.job_id LtZWUTRwUUBeFlUkDndBRg _model_server_result.datetime_utc '2024-11-05 06:47:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yp7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5YP7 # _exptl.entry_id 5YP7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YP7 _cell.length_a 34.749 _cell.length_b 43.345 _cell.length_c 54.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YP7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 3 A CYS 128 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A SG CYS 6 A CYS 131 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc3 A SG CYS 17 A CYS 142 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc4 A SG CYS 20 A CYS 145 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc5 A SG CYS 26 A CYS 151 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 A SG CYS 29 A CYS 154 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc7 A NE2 HIS 35 A HIS 160 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc8 A ND1 HIS 38 A HIS 163 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc9 B SG CYS 3 D CYS 128 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc10 B SG CYS 6 D CYS 131 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc11 B SG CYS 17 D CYS 142 1_555 F ZN ZN . D ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc12 B SG CYS 20 D CYS 145 1_555 F ZN ZN . D ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc13 B SG CYS 26 D CYS 151 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc14 B SG CYS 29 D CYS 154 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc15 B NE2 HIS 35 D HIS 160 1_555 F ZN ZN . D ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc16 B ND1 HIS 38 D HIS 163 1_555 F ZN ZN . D ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YP7 _atom_sites.fract_transf_matrix[1][1] 0.028778 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 1 ZN ZN . D 2 ZN A 1 202 2 ZN ZN . E 2 ZN D 1 201 3 ZN ZN . F 2 ZN D 1 202 4 ZN ZN . G 3 HOH A 1 301 21 HOH HOH . G 3 HOH A 2 302 47 HOH HOH . G 3 HOH A 3 303 45 HOH HOH . G 3 HOH A 4 304 61 HOH HOH . G 3 HOH A 5 305 81 HOH HOH . G 3 HOH A 6 306 3 HOH HOH . G 3 HOH A 7 307 8 HOH HOH . G 3 HOH A 8 308 52 HOH HOH . G 3 HOH A 9 309 10 HOH HOH . G 3 HOH A 10 310 73 HOH HOH . G 3 HOH A 11 311 9 HOH HOH . G 3 HOH A 12 312 34 HOH HOH . G 3 HOH A 13 313 46 HOH HOH . G 3 HOH A 14 314 26 HOH HOH . G 3 HOH A 15 315 41 HOH HOH . G 3 HOH A 16 316 75 HOH HOH . G 3 HOH A 17 317 19 HOH HOH . G 3 HOH A 18 318 77 HOH HOH . G 3 HOH A 19 319 36 HOH HOH . G 3 HOH A 20 320 60 HOH HOH . G 3 HOH A 21 321 49 HOH HOH . G 3 HOH A 22 322 27 HOH HOH . G 3 HOH A 23 323 35 HOH HOH . G 3 HOH A 24 324 84 HOH HOH . G 3 HOH A 25 325 72 HOH HOH . G 3 HOH A 26 326 25 HOH HOH . G 3 HOH A 27 327 62 HOH HOH . G 3 HOH A 28 328 74 HOH HOH . G 3 HOH A 29 329 79 HOH HOH . G 3 HOH A 30 330 54 HOH HOH . G 3 HOH A 31 331 23 HOH HOH . G 3 HOH A 32 332 17 HOH HOH . G 3 HOH A 33 333 76 HOH HOH . G 3 HOH A 34 334 56 HOH HOH . G 3 HOH A 35 335 51 HOH HOH . G 3 HOH A 36 336 78 HOH HOH . G 3 HOH A 37 337 83 HOH HOH . G 3 HOH A 38 338 18 HOH HOH . G 3 HOH A 39 339 20 HOH HOH . G 3 HOH A 40 340 50 HOH HOH . G 3 HOH A 41 341 39 HOH HOH . H 3 HOH D 1 301 2 HOH HOH . H 3 HOH D 2 302 66 HOH HOH . H 3 HOH D 3 303 22 HOH HOH . H 3 HOH D 4 304 44 HOH HOH . H 3 HOH D 5 305 67 HOH HOH . H 3 HOH D 6 306 57 HOH HOH . H 3 HOH D 7 307 1 HOH HOH . H 3 HOH D 8 308 4 HOH HOH . H 3 HOH D 9 309 71 HOH HOH . H 3 HOH D 10 310 11 HOH HOH . H 3 HOH D 11 311 43 HOH HOH . H 3 HOH D 12 312 16 HOH HOH . H 3 HOH D 13 313 48 HOH HOH . H 3 HOH D 14 314 14 HOH HOH . H 3 HOH D 15 315 6 HOH HOH . H 3 HOH D 16 316 5 HOH HOH . H 3 HOH D 17 317 24 HOH HOH . H 3 HOH D 18 318 37 HOH HOH . H 3 HOH D 19 319 64 HOH HOH . H 3 HOH D 20 320 70 HOH HOH . H 3 HOH D 21 321 29 HOH HOH . H 3 HOH D 22 322 82 HOH HOH . H 3 HOH D 23 323 59 HOH HOH . H 3 HOH D 24 324 55 HOH HOH . H 3 HOH D 25 325 40 HOH HOH . H 3 HOH D 26 326 7 HOH HOH . H 3 HOH D 27 327 15 HOH HOH . H 3 HOH D 28 328 12 HOH HOH . H 3 HOH D 29 329 13 HOH HOH . H 3 HOH D 30 330 28 HOH HOH . H 3 HOH D 31 331 30 HOH HOH . H 3 HOH D 32 332 31 HOH HOH . H 3 HOH D 33 333 58 HOH HOH . H 3 HOH D 34 334 38 HOH HOH . H 3 HOH D 35 335 65 HOH HOH . H 3 HOH D 36 336 63 HOH HOH . H 3 HOH D 37 337 80 HOH HOH . H 3 HOH D 38 338 53 HOH HOH . H 3 HOH D 39 339 42 HOH HOH . H 3 HOH D 40 340 68 HOH HOH . H 3 HOH D 41 341 85 HOH HOH . H 3 HOH D 42 342 33 HOH HOH . H 3 HOH D 43 343 32 HOH HOH . H 3 HOH D 44 344 69 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 141.164 _atom_site.Cartn_y 158.434 _atom_site.Cartn_z 234.125 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #