data_5YP8 # _model_server_result.job_id FKi_-mm0Djf3WcclmHViAQ _model_server_result.datetime_utc '2024-11-05 04:11:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 5YP8 # _exptl.entry_id 5YP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YP8 _cell.length_a 28.981 _cell.length_b 43.948 _cell.length_c 66.596 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 8 A CYS 4 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 A SG CYS 11 A CYS 7 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc3 A SG CYS 22 A CYS 18 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A SG CYS 25 A CYS 21 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc5 A SG CYS 31 A CYS 27 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 A SG CYS 34 A CYS 30 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc7 A NE2 HIS 40 A HIS 36 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc8 A ND1 HIS 43 A HIS 39 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc9 B SG CYS 8 B CYS 4 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc10 B SG CYS 11 B CYS 7 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc11 B SG CYS 22 B CYS 18 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc12 B SG CYS 25 B CYS 21 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc13 B SG CYS 31 B CYS 27 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc14 B SG CYS 34 B CYS 30 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc15 B NE2 HIS 40 B HIS 36 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc16 B ND1 HIS 43 B HIS 39 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YP8 _atom_sites.fract_transf_matrix[1][1] 0.034505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 101 1 ZN ZN . D 2 ZN A 1 102 2 ZN ZN . E 2 ZN B 1 101 3 ZN ZN . F 2 ZN B 1 102 4 ZN ZN . G 3 HOH A 1 201 7 HOH HOH . G 3 HOH A 2 202 29 HOH HOH . G 3 HOH A 3 203 45 HOH HOH . G 3 HOH A 4 204 47 HOH HOH . G 3 HOH A 5 205 48 HOH HOH . G 3 HOH A 6 206 27 HOH HOH . G 3 HOH A 7 207 63 HOH HOH . G 3 HOH A 8 208 49 HOH HOH . G 3 HOH A 9 209 1 HOH HOH . G 3 HOH A 10 210 26 HOH HOH . G 3 HOH A 11 211 68 HOH HOH . G 3 HOH A 12 212 8 HOH HOH . G 3 HOH A 13 213 59 HOH HOH . G 3 HOH A 14 214 22 HOH HOH . G 3 HOH A 15 215 53 HOH HOH . G 3 HOH A 16 216 31 HOH HOH . G 3 HOH A 17 217 51 HOH HOH . G 3 HOH A 18 218 38 HOH HOH . G 3 HOH A 19 219 54 HOH HOH . G 3 HOH A 20 220 25 HOH HOH . G 3 HOH A 21 221 12 HOH HOH . G 3 HOH A 22 222 61 HOH HOH . G 3 HOH A 23 223 5 HOH HOH . G 3 HOH A 24 224 10 HOH HOH . G 3 HOH A 25 225 24 HOH HOH . G 3 HOH A 26 226 19 HOH HOH . G 3 HOH A 27 227 67 HOH HOH . G 3 HOH A 28 228 40 HOH HOH . G 3 HOH A 29 229 60 HOH HOH . G 3 HOH A 30 230 14 HOH HOH . G 3 HOH A 31 231 73 HOH HOH . G 3 HOH A 32 232 32 HOH HOH . G 3 HOH A 33 233 72 HOH HOH . G 3 HOH A 34 234 15 HOH HOH . G 3 HOH A 35 235 57 HOH HOH . G 3 HOH A 36 236 77 HOH HOH . G 3 HOH A 37 237 69 HOH HOH . G 3 HOH A 38 238 76 HOH HOH . G 3 HOH A 39 239 42 HOH HOH . G 3 HOH A 40 240 70 HOH HOH . H 3 HOH B 1 201 6 HOH HOH . H 3 HOH B 2 202 21 HOH HOH . H 3 HOH B 3 203 66 HOH HOH . H 3 HOH B 4 204 35 HOH HOH . H 3 HOH B 5 205 3 HOH HOH . H 3 HOH B 6 206 20 HOH HOH . H 3 HOH B 7 207 11 HOH HOH . H 3 HOH B 8 208 30 HOH HOH . H 3 HOH B 9 209 2 HOH HOH . H 3 HOH B 10 210 34 HOH HOH . H 3 HOH B 11 211 55 HOH HOH . H 3 HOH B 12 212 62 HOH HOH . H 3 HOH B 13 213 36 HOH HOH . H 3 HOH B 14 214 64 HOH HOH . H 3 HOH B 15 215 17 HOH HOH . H 3 HOH B 16 216 4 HOH HOH . H 3 HOH B 17 217 44 HOH HOH . H 3 HOH B 18 218 13 HOH HOH . H 3 HOH B 19 219 9 HOH HOH . H 3 HOH B 20 220 58 HOH HOH . H 3 HOH B 21 221 18 HOH HOH . H 3 HOH B 22 222 71 HOH HOH . H 3 HOH B 23 223 28 HOH HOH . H 3 HOH B 24 224 56 HOH HOH . H 3 HOH B 25 225 75 HOH HOH . H 3 HOH B 26 226 16 HOH HOH . H 3 HOH B 27 227 37 HOH HOH . H 3 HOH B 28 228 41 HOH HOH . H 3 HOH B 29 229 50 HOH HOH . H 3 HOH B 30 230 33 HOH HOH . H 3 HOH B 31 231 52 HOH HOH . H 3 HOH B 32 232 65 HOH HOH . H 3 HOH B 33 233 39 HOH HOH . H 3 HOH B 34 234 23 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.835 _atom_site.Cartn_y 9.553 _atom_site.Cartn_z 216.367 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #