data_5YP8
#
_model_server_result.job_id            IidMZ6CoVnU9mvpBT-j2OA 
_model_server_result.datetime_utc      '2024-11-24 08:03:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
#
_entry.id    5YP8 
#
_exptl.entry_id    5YP8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YP8 
_cell.length_a            28.981 
_cell.length_b            43.948 
_cell.length_c            66.596 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 8 A CYS 4 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc2 A SG CYS 11 A CYS 7 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc3 A SG CYS 22 A CYS 18 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc4 A SG CYS 25 A CYS 21 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc5 A SG CYS 31 A CYS 27 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc6 A SG CYS 34 A CYS 30 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc7 A NE2 HIS 40 A HIS 36 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc8 A ND1 HIS 43 A HIS 39 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc9 B SG CYS 8 B CYS 4 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc10 B SG CYS 11 B CYS 7 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc11 B SG CYS 22 B CYS 18 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc12 B SG CYS 25 B CYS 21 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc13 B SG CYS 31 B CYS 27 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc14 B SG CYS 34 B CYS 30 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc15 B NE2 HIS 40 B HIS 36 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc16 B ND1 HIS 43 B HIS 39 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YP8 
_atom_sites.fract_transf_matrix[1][1]    0.034505 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022754 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015016 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 101 1 ZN ZN . 
D 2 ZN A 1 102 2 ZN ZN . 
E 2 ZN B 1 101 3 ZN ZN . 
F 2 ZN B 1 102 4 ZN ZN . 
G 3 HOH A 1 201 7 HOH HOH . 
G 3 HOH A 2 202 29 HOH HOH . 
G 3 HOH A 3 203 45 HOH HOH . 
G 3 HOH A 4 204 47 HOH HOH . 
G 3 HOH A 5 205 48 HOH HOH . 
G 3 HOH A 6 206 27 HOH HOH . 
G 3 HOH A 7 207 63 HOH HOH . 
G 3 HOH A 8 208 49 HOH HOH . 
G 3 HOH A 9 209 1 HOH HOH . 
G 3 HOH A 10 210 26 HOH HOH . 
G 3 HOH A 11 211 68 HOH HOH . 
G 3 HOH A 12 212 8 HOH HOH . 
G 3 HOH A 13 213 59 HOH HOH . 
G 3 HOH A 14 214 22 HOH HOH . 
G 3 HOH A 15 215 53 HOH HOH . 
G 3 HOH A 16 216 31 HOH HOH . 
G 3 HOH A 17 217 51 HOH HOH . 
G 3 HOH A 18 218 38 HOH HOH . 
G 3 HOH A 19 219 54 HOH HOH . 
G 3 HOH A 20 220 25 HOH HOH . 
G 3 HOH A 21 221 12 HOH HOH . 
G 3 HOH A 22 222 61 HOH HOH . 
G 3 HOH A 23 223 5 HOH HOH . 
G 3 HOH A 24 224 10 HOH HOH . 
G 3 HOH A 25 225 24 HOH HOH . 
G 3 HOH A 26 226 19 HOH HOH . 
G 3 HOH A 27 227 67 HOH HOH . 
G 3 HOH A 28 228 40 HOH HOH . 
G 3 HOH A 29 229 60 HOH HOH . 
G 3 HOH A 30 230 14 HOH HOH . 
G 3 HOH A 31 231 73 HOH HOH . 
G 3 HOH A 32 232 32 HOH HOH . 
G 3 HOH A 33 233 72 HOH HOH . 
G 3 HOH A 34 234 15 HOH HOH . 
G 3 HOH A 35 235 57 HOH HOH . 
G 3 HOH A 36 236 77 HOH HOH . 
G 3 HOH A 37 237 69 HOH HOH . 
G 3 HOH A 38 238 76 HOH HOH . 
G 3 HOH A 39 239 42 HOH HOH . 
G 3 HOH A 40 240 70 HOH HOH . 
H 3 HOH B 1 201 6 HOH HOH . 
H 3 HOH B 2 202 21 HOH HOH . 
H 3 HOH B 3 203 66 HOH HOH . 
H 3 HOH B 4 204 35 HOH HOH . 
H 3 HOH B 5 205 3 HOH HOH . 
H 3 HOH B 6 206 20 HOH HOH . 
H 3 HOH B 7 207 11 HOH HOH . 
H 3 HOH B 8 208 30 HOH HOH . 
H 3 HOH B 9 209 2 HOH HOH . 
H 3 HOH B 10 210 34 HOH HOH . 
H 3 HOH B 11 211 55 HOH HOH . 
H 3 HOH B 12 212 62 HOH HOH . 
H 3 HOH B 13 213 36 HOH HOH . 
H 3 HOH B 14 214 64 HOH HOH . 
H 3 HOH B 15 215 17 HOH HOH . 
H 3 HOH B 16 216 4 HOH HOH . 
H 3 HOH B 17 217 44 HOH HOH . 
H 3 HOH B 18 218 13 HOH HOH . 
H 3 HOH B 19 219 9 HOH HOH . 
H 3 HOH B 20 220 58 HOH HOH . 
H 3 HOH B 21 221 18 HOH HOH . 
H 3 HOH B 22 222 71 HOH HOH . 
H 3 HOH B 23 223 28 HOH HOH . 
H 3 HOH B 24 224 56 HOH HOH . 
H 3 HOH B 25 225 75 HOH HOH . 
H 3 HOH B 26 226 16 HOH HOH . 
H 3 HOH B 27 227 37 HOH HOH . 
H 3 HOH B 28 228 41 HOH HOH . 
H 3 HOH B 29 229 50 HOH HOH . 
H 3 HOH B 30 230 33 HOH HOH . 
H 3 HOH B 31 231 52 HOH HOH . 
H 3 HOH B 32 232 65 HOH HOH . 
H 3 HOH B 33 233 39 HOH HOH . 
H 3 HOH B 34 234 23 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               12.298 
_atom_site.Cartn_y               -3.837 
_atom_site.Cartn_z               196.199 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        25.75 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           102 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#