data_5YPA # _model_server_result.job_id tBNNPpHY2BSTQ-gb31oQaw _model_server_result.datetime_utc '2024-12-26 19:18:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ypa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 5YPA # _exptl.entry_id 5YPA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YPA _cell.length_a 29.085 _cell.length_b 43.822 _cell.length_c 67.219 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YPA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 8 A CYS 4 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 A SG CYS 11 A CYS 7 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 A SG CYS 22 A CYS 18 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc4 A SG CYS 25 A CYS 21 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc5 A SG CYS 31 A CYS 27 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 A SG CYS 34 A CYS 30 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc7 A NE2 HIS 40 A HIS 36 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc8 A ND1 HIS 43 A HIS 39 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc9 B SG CYS 8 B CYS 4 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc10 B SG CYS 11 B CYS 7 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc11 B SG CYS 22 B CYS 18 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc12 B SG CYS 25 B CYS 21 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc13 B SG CYS 31 B CYS 27 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc14 B SG CYS 34 B CYS 30 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc15 B NE2 HIS 40 B HIS 36 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc16 B ND1 HIS 43 B HIS 39 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YPA _atom_sites.fract_transf_matrix[1][1] 0.034382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 101 1 ZN ZN . D 2 ZN A 1 102 2 ZN ZN . E 2 ZN B 1 101 3 ZN ZN . F 2 ZN B 1 102 4 ZN ZN . G 3 HOH A 1 201 6 HOH HOH . G 3 HOH A 2 202 5 HOH HOH . G 3 HOH A 3 203 17 HOH HOH . G 3 HOH A 4 204 20 HOH HOH . G 3 HOH A 5 205 14 HOH HOH . G 3 HOH A 6 206 2 HOH HOH . G 3 HOH A 7 207 24 HOH HOH . G 3 HOH A 8 208 9 HOH HOH . G 3 HOH A 9 209 25 HOH HOH . G 3 HOH A 10 210 18 HOH HOH . G 3 HOH A 11 211 26 HOH HOH . G 3 HOH A 12 212 22 HOH HOH . G 3 HOH A 13 213 15 HOH HOH . G 3 HOH A 14 214 11 HOH HOH . H 3 HOH B 1 201 13 HOH HOH . H 3 HOH B 2 202 16 HOH HOH . H 3 HOH B 3 203 7 HOH HOH . H 3 HOH B 4 204 1 HOH HOH . H 3 HOH B 5 205 19 HOH HOH . H 3 HOH B 6 206 21 HOH HOH . H 3 HOH B 7 207 3 HOH HOH . H 3 HOH B 8 208 4 HOH HOH . H 3 HOH B 9 209 12 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -12.629 _atom_site.Cartn_y 3.69 _atom_site.Cartn_z -3.541 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #