data_5YPH
#
_model_server_result.job_id            VZATHijR949G5RvJ7mJ4KA 
_model_server_result.datetime_utc      '2025-07-31 07:54:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yph 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":102}' 
#
_entry.id    5YPH 
#
_exptl.entry_id    5YPH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.61 
_cell.angle_gamma         90 
_cell.entry_id            5YPH 
_cell.length_a            33.658 
_cell.length_b            33.381 
_cell.length_c            35.019 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YPH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 8 A CYS 4 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc2 A SG CYS 11 A CYS 7 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc3 A SG CYS 22 A CYS 18 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 A SG CYS 25 A CYS 21 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc5 A SG CYS 31 A CYS 27 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc6 A SG CYS 34 A CYS 30 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc7 A NE2 HIS 40 A HIS 36 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc8 A ND1 HIS 43 A HIS 39 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc9 B SG CYS 8 B CYS 4 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc10 B SG CYS 11 B CYS 7 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc11 B SG CYS 22 B CYS 18 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc12 B SG CYS 25 B CYS 21 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc13 B SG CYS 31 B CYS 27 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc14 B SG CYS 34 B CYS 30 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc15 B NE2 HIS 40 B HIS 36 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc16 B ND1 HIS 43 B HIS 39 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YPH 
_atom_sites.fract_transf_matrix[1][1]    0.029711 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007195 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029957 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029381 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 101 1 ZN ZN . 
D 2 ZN A 1 102 2 ZN ZN . 
E 2 ZN B 1 101 3 ZN ZN . 
F 2 ZN B 1 102 4 ZN ZN . 
G 3 HOH A 1 201 55 HOH HOH . 
G 3 HOH A 2 202 53 HOH HOH . 
G 3 HOH A 3 203 74 HOH HOH . 
G 3 HOH A 4 204 63 HOH HOH . 
G 3 HOH A 5 205 4 HOH HOH . 
G 3 HOH A 6 206 17 HOH HOH . 
G 3 HOH A 7 207 56 HOH HOH . 
G 3 HOH A 8 208 33 HOH HOH . 
G 3 HOH A 9 209 36 HOH HOH . 
G 3 HOH A 10 210 59 HOH HOH . 
G 3 HOH A 11 211 12 HOH HOH . 
G 3 HOH A 12 212 117 HOH HOH . 
G 3 HOH A 13 213 48 HOH HOH . 
G 3 HOH A 14 214 54 HOH HOH . 
G 3 HOH A 15 215 95 HOH HOH . 
G 3 HOH A 16 216 5 HOH HOH . 
G 3 HOH A 17 217 44 HOH HOH . 
G 3 HOH A 18 218 38 HOH HOH . 
G 3 HOH A 19 219 40 HOH HOH . 
G 3 HOH A 20 220 19 HOH HOH . 
G 3 HOH A 21 221 29 HOH HOH . 
G 3 HOH A 22 222 62 HOH HOH . 
G 3 HOH A 23 223 3 HOH HOH . 
G 3 HOH A 24 224 23 HOH HOH . 
G 3 HOH A 25 225 41 HOH HOH . 
G 3 HOH A 26 226 21 HOH HOH . 
G 3 HOH A 27 227 30 HOH HOH . 
G 3 HOH A 28 228 85 HOH HOH . 
G 3 HOH A 29 229 14 HOH HOH . 
G 3 HOH A 30 230 97 HOH HOH . 
G 3 HOH A 31 231 109 HOH HOH . 
G 3 HOH A 32 232 20 HOH HOH . 
G 3 HOH A 33 233 39 HOH HOH . 
G 3 HOH A 34 234 71 HOH HOH . 
G 3 HOH A 35 235 76 HOH HOH . 
G 3 HOH A 36 236 73 HOH HOH . 
G 3 HOH A 37 237 69 HOH HOH . 
G 3 HOH A 38 238 122 HOH HOH . 
G 3 HOH A 39 239 35 HOH HOH . 
G 3 HOH A 40 240 15 HOH HOH . 
G 3 HOH A 41 241 31 HOH HOH . 
G 3 HOH A 42 242 7 HOH HOH . 
G 3 HOH A 43 243 115 HOH HOH . 
G 3 HOH A 44 244 42 HOH HOH . 
G 3 HOH A 45 245 26 HOH HOH . 
G 3 HOH A 46 246 51 HOH HOH . 
G 3 HOH A 47 247 107 HOH HOH . 
G 3 HOH A 48 248 52 HOH HOH . 
G 3 HOH A 49 249 112 HOH HOH . 
G 3 HOH A 50 250 66 HOH HOH . 
G 3 HOH A 51 251 28 HOH HOH . 
G 3 HOH A 52 252 22 HOH HOH . 
G 3 HOH A 53 253 78 HOH HOH . 
G 3 HOH A 54 254 127 HOH HOH . 
G 3 HOH A 55 255 92 HOH HOH . 
G 3 HOH A 56 256 80 HOH HOH . 
G 3 HOH A 57 257 60 HOH HOH . 
G 3 HOH A 58 258 47 HOH HOH . 
G 3 HOH A 59 259 70 HOH HOH . 
G 3 HOH A 60 260 123 HOH HOH . 
G 3 HOH A 61 261 119 HOH HOH . 
G 3 HOH A 62 262 108 HOH HOH . 
G 3 HOH A 63 263 91 HOH HOH . 
G 3 HOH A 64 264 125 HOH HOH . 
G 3 HOH A 65 265 93 HOH HOH . 
G 3 HOH A 66 266 83 HOH HOH . 
H 3 HOH B 1 201 104 HOH HOH . 
H 3 HOH B 2 202 75 HOH HOH . 
H 3 HOH B 3 203 45 HOH HOH . 
H 3 HOH B 4 204 11 HOH HOH . 
H 3 HOH B 5 205 96 HOH HOH . 
H 3 HOH B 6 206 18 HOH HOH . 
H 3 HOH B 7 207 67 HOH HOH . 
H 3 HOH B 8 208 9 HOH HOH . 
H 3 HOH B 9 209 46 HOH HOH . 
H 3 HOH B 10 210 32 HOH HOH . 
H 3 HOH B 11 211 8 HOH HOH . 
H 3 HOH B 12 212 34 HOH HOH . 
H 3 HOH B 13 213 6 HOH HOH . 
H 3 HOH B 14 214 13 HOH HOH . 
H 3 HOH B 15 215 72 HOH HOH . 
H 3 HOH B 16 216 43 HOH HOH . 
H 3 HOH B 17 217 10 HOH HOH . 
H 3 HOH B 18 218 1 HOH HOH . 
H 3 HOH B 19 219 84 HOH HOH . 
H 3 HOH B 20 220 50 HOH HOH . 
H 3 HOH B 21 221 113 HOH HOH . 
H 3 HOH B 22 222 58 HOH HOH . 
H 3 HOH B 23 223 82 HOH HOH . 
H 3 HOH B 24 224 103 HOH HOH . 
H 3 HOH B 25 225 61 HOH HOH . 
H 3 HOH B 26 226 49 HOH HOH . 
H 3 HOH B 27 227 87 HOH HOH . 
H 3 HOH B 28 228 106 HOH HOH . 
H 3 HOH B 29 229 16 HOH HOH . 
H 3 HOH B 30 230 65 HOH HOH . 
H 3 HOH B 31 231 121 HOH HOH . 
H 3 HOH B 32 232 2 HOH HOH . 
H 3 HOH B 33 233 25 HOH HOH . 
H 3 HOH B 34 234 100 HOH HOH . 
H 3 HOH B 35 235 27 HOH HOH . 
H 3 HOH B 36 236 86 HOH HOH . 
H 3 HOH B 37 237 57 HOH HOH . 
H 3 HOH B 38 238 79 HOH HOH . 
H 3 HOH B 39 239 110 HOH HOH . 
H 3 HOH B 40 240 89 HOH HOH . 
H 3 HOH B 41 241 124 HOH HOH . 
H 3 HOH B 42 242 129 HOH HOH . 
H 3 HOH B 43 243 99 HOH HOH . 
H 3 HOH B 44 244 114 HOH HOH . 
H 3 HOH B 45 245 105 HOH HOH . 
H 3 HOH B 46 246 68 HOH HOH . 
H 3 HOH B 47 247 77 HOH HOH . 
H 3 HOH B 48 248 64 HOH HOH . 
H 3 HOH B 49 249 118 HOH HOH . 
H 3 HOH B 50 250 88 HOH HOH . 
H 3 HOH B 51 251 98 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -2.414 
_atom_site.Cartn_y               -0.441 
_atom_site.Cartn_z               -4.38 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        12.48 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           102 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#