data_5YPJ
#
_model_server_result.job_id            zqS0njmFZ1obq5FixkB5nA 
_model_server_result.datetime_utc      '2024-10-19 21:43:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ypj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5YPJ 
#
_exptl.entry_id    5YPJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.933 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COBALT (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95 
_cell.angle_gamma         90 
_cell.entry_id            5YPJ 
_cell.length_a            49.285 
_cell.length_b            48.536 
_cell.length_c            56.353 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YPJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASN 143 A ASN 109 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? 
metalc ? metalc2 A O VAL 145 A VAL 111 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc3 A OD1 ASP 165 A ASP 131 1_555 C CO CO . A CO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc4 A OD2 ASP 165 A ASP 131 1_555 C CO CO . A CO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc5 A OD2 ASP 176 A ASP 142 1_555 B CO CO . A CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc6 A OD1 ASP 176 A ASP 142 1_555 C CO CO . A CO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc7 A NE2 HIS 239 A HIS 205 1_555 B CO CO . A CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc8 A OE2 GLU 272 A GLU 238 1_555 B CO CO . A CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc9 A O THR 299 A THR 265 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc10 A OE1 GLU 303 A GLU 269 1_555 B CO CO . A CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc11 A OE2 GLU 303 A GLU 269 1_555 C CO CO . A CO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc12 B CO CO . A CO 301 1_555 F O HOH . A HOH 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc13 C CO CO . A CO 302 1_555 F O HOH . A HOH 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc14 C CO CO . A CO 302 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc15 E NA NA . A NA 304 1_555 F O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? 
#
_chem_comp.formula           'Co 2' 
_chem_comp.formula_weight    58.933 
_chem_comp.id                CO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COBALT (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YPJ 
_atom_sites.fract_transf_matrix[1][1]    0.02029 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001774 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020603 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017813 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CO A 1 301 301 CO CO . 
C 2 CO A 1 302 302 CO CO . 
D 3 CL A 1 303 311 CL CL . 
E 4 NA A 1 304 321 NA NA . 
F 5 HOH A 1 401 473 HOH HOH . 
F 5 HOH A 2 402 476 HOH HOH . 
F 5 HOH A 3 403 410 HOH HOH . 
F 5 HOH A 4 404 429 HOH HOH . 
F 5 HOH A 5 405 400 HOH HOH . 
F 5 HOH A 6 406 422 HOH HOH . 
F 5 HOH A 7 407 475 HOH HOH . 
F 5 HOH A 8 408 428 HOH HOH . 
F 5 HOH A 9 409 332 HOH HOH . 
F 5 HOH A 10 410 345 HOH HOH . 
F 5 HOH A 11 411 341 HOH HOH . 
F 5 HOH A 12 412 432 HOH HOH . 
F 5 HOH A 13 413 353 HOH HOH . 
F 5 HOH A 14 414 461 HOH HOH . 
F 5 HOH A 15 415 450 HOH HOH . 
F 5 HOH A 16 416 331 HOH HOH . 
F 5 HOH A 17 417 411 HOH HOH . 
F 5 HOH A 18 418 451 HOH HOH . 
F 5 HOH A 19 419 354 HOH HOH . 
F 5 HOH A 20 420 458 HOH HOH . 
F 5 HOH A 21 421 386 HOH HOH . 
F 5 HOH A 22 422 407 HOH HOH . 
F 5 HOH A 23 423 351 HOH HOH . 
F 5 HOH A 24 424 361 HOH HOH . 
F 5 HOH A 25 425 399 HOH HOH . 
F 5 HOH A 26 426 463 HOH HOH . 
F 5 HOH A 27 427 377 HOH HOH . 
F 5 HOH A 28 428 453 HOH HOH . 
F 5 HOH A 29 429 404 HOH HOH . 
F 5 HOH A 30 430 338 HOH HOH . 
F 5 HOH A 31 431 380 HOH HOH . 
F 5 HOH A 32 432 383 HOH HOH . 
F 5 HOH A 33 433 385 HOH HOH . 
F 5 HOH A 34 434 363 HOH HOH . 
F 5 HOH A 35 435 420 HOH HOH . 
F 5 HOH A 36 436 417 HOH HOH . 
F 5 HOH A 37 437 347 HOH HOH . 
F 5 HOH A 38 438 395 HOH HOH . 
F 5 HOH A 39 439 447 HOH HOH . 
F 5 HOH A 40 440 423 HOH HOH . 
F 5 HOH A 41 441 427 HOH HOH . 
F 5 HOH A 42 442 448 HOH HOH . 
F 5 HOH A 43 443 365 HOH HOH . 
F 5 HOH A 44 444 424 HOH HOH . 
F 5 HOH A 45 445 408 HOH HOH . 
F 5 HOH A 46 446 340 HOH HOH . 
F 5 HOH A 47 447 455 HOH HOH . 
F 5 HOH A 48 448 414 HOH HOH . 
F 5 HOH A 49 449 441 HOH HOH . 
F 5 HOH A 50 450 435 HOH HOH . 
F 5 HOH A 51 451 462 HOH HOH . 
F 5 HOH A 52 452 387 HOH HOH . 
F 5 HOH A 53 453 378 HOH HOH . 
F 5 HOH A 54 454 430 HOH HOH . 
F 5 HOH A 55 455 373 HOH HOH . 
F 5 HOH A 56 456 358 HOH HOH . 
F 5 HOH A 57 457 445 HOH HOH . 
F 5 HOH A 58 458 452 HOH HOH . 
F 5 HOH A 59 459 440 HOH HOH . 
F 5 HOH A 60 460 337 HOH HOH . 
F 5 HOH A 61 461 350 HOH HOH . 
F 5 HOH A 62 462 449 HOH HOH . 
F 5 HOH A 63 463 370 HOH HOH . 
F 5 HOH A 64 464 372 HOH HOH . 
F 5 HOH A 65 465 418 HOH HOH . 
F 5 HOH A 66 466 466 HOH HOH . 
F 5 HOH A 67 467 364 HOH HOH . 
F 5 HOH A 68 468 346 HOH HOH . 
F 5 HOH A 69 469 381 HOH HOH . 
F 5 HOH A 70 470 359 HOH HOH . 
F 5 HOH A 71 471 335 HOH HOH . 
F 5 HOH A 72 472 416 HOH HOH . 
F 5 HOH A 73 473 425 HOH HOH . 
F 5 HOH A 74 474 459 HOH HOH . 
F 5 HOH A 75 475 388 HOH HOH . 
F 5 HOH A 76 476 433 HOH HOH . 
F 5 HOH A 77 477 379 HOH HOH . 
F 5 HOH A 78 478 464 HOH HOH . 
F 5 HOH A 79 479 391 HOH HOH . 
F 5 HOH A 80 480 396 HOH HOH . 
F 5 HOH A 81 481 382 HOH HOH . 
F 5 HOH A 82 482 348 HOH HOH . 
F 5 HOH A 83 483 376 HOH HOH . 
F 5 HOH A 84 484 369 HOH HOH . 
F 5 HOH A 85 485 339 HOH HOH . 
F 5 HOH A 86 486 362 HOH HOH . 
F 5 HOH A 87 487 384 HOH HOH . 
F 5 HOH A 88 488 442 HOH HOH . 
F 5 HOH A 89 489 349 HOH HOH . 
F 5 HOH A 90 490 334 HOH HOH . 
F 5 HOH A 91 491 393 HOH HOH . 
F 5 HOH A 92 492 415 HOH HOH . 
F 5 HOH A 93 493 460 HOH HOH . 
F 5 HOH A 94 494 389 HOH HOH . 
F 5 HOH A 95 495 398 HOH HOH . 
F 5 HOH A 96 496 403 HOH HOH . 
F 5 HOH A 97 497 333 HOH HOH . 
F 5 HOH A 98 498 401 HOH HOH . 
F 5 HOH A 99 499 344 HOH HOH . 
F 5 HOH A 100 500 444 HOH HOH . 
F 5 HOH A 101 501 413 HOH HOH . 
F 5 HOH A 102 502 342 HOH HOH . 
F 5 HOH A 103 503 468 HOH HOH . 
F 5 HOH A 104 504 366 HOH HOH . 
F 5 HOH A 105 505 402 HOH HOH . 
F 5 HOH A 106 506 472 HOH HOH . 
F 5 HOH A 107 507 419 HOH HOH . 
F 5 HOH A 108 508 371 HOH HOH . 
F 5 HOH A 109 509 443 HOH HOH . 
F 5 HOH A 110 510 355 HOH HOH . 
F 5 HOH A 111 511 397 HOH HOH . 
F 5 HOH A 112 512 421 HOH HOH . 
F 5 HOH A 113 513 375 HOH HOH . 
F 5 HOH A 114 514 352 HOH HOH . 
F 5 HOH A 115 515 446 HOH HOH . 
F 5 HOH A 116 516 336 HOH HOH . 
F 5 HOH A 117 517 467 HOH HOH . 
F 5 HOH A 118 518 390 HOH HOH . 
F 5 HOH A 119 519 474 HOH HOH . 
F 5 HOH A 120 520 367 HOH HOH . 
F 5 HOH A 121 521 357 HOH HOH . 
F 5 HOH A 122 522 426 HOH HOH . 
F 5 HOH A 123 523 360 HOH HOH . 
F 5 HOH A 124 524 437 HOH HOH . 
F 5 HOH A 125 525 434 HOH HOH . 
F 5 HOH A 126 526 343 HOH HOH . 
F 5 HOH A 127 527 356 HOH HOH . 
F 5 HOH A 128 528 412 HOH HOH . 
F 5 HOH A 129 529 465 HOH HOH . 
F 5 HOH A 130 530 457 HOH HOH . 
F 5 HOH A 131 531 471 HOH HOH . 
F 5 HOH A 132 532 431 HOH HOH . 
F 5 HOH A 133 533 469 HOH HOH . 
F 5 HOH A 134 534 394 HOH HOH . 
F 5 HOH A 135 535 406 HOH HOH . 
F 5 HOH A 136 536 392 HOH HOH . 
F 5 HOH A 137 537 477 HOH HOH . 
F 5 HOH A 138 538 368 HOH HOH . 
F 5 HOH A 139 539 454 HOH HOH . 
F 5 HOH A 140 540 438 HOH HOH . 
F 5 HOH A 141 541 374 HOH HOH . 
F 5 HOH A 142 542 456 HOH HOH . 
F 5 HOH A 143 543 436 HOH HOH . 
F 5 HOH A 144 544 470 HOH HOH . 
F 5 HOH A 145 545 405 HOH HOH . 
F 5 HOH A 146 546 439 HOH HOH . 
F 5 HOH A 147 547 409 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CO 
_atom_site.label_atom_id         CO 
_atom_site.label_comp_id         CO 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               16.499 
_atom_site.Cartn_y               0.529 
_atom_site.Cartn_z               11.22 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20.75 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CO 
_atom_site.auth_comp_id          CO 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           361 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#