data_5YPN
#
_model_server_result.job_id            sXkABsOVNC2_4EA5bo58EA 
_model_server_result.datetime_utc      '2024-11-07 01:33:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ypn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":304}' 
#
_entry.id    5YPN 
#
_exptl.entry_id    5YPN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YPN 
_cell.length_a            68.73 
_cell.length_b            73.51 
_cell.length_c            76.53 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YPN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 92 A HIS 120 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc2 A ND1 HIS 94 A HIS 122 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc3 A OD1 ASP 96 A ASP 124 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc4 A OD2 ASP 96 A ASP 124 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc5 A NE2 HIS 161 A HIS 189 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc6 A SG CYS 180 A CYS 208 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc7 A NE2 HIS 222 A HIS 250 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc8 C ZN ZN . A ZN 301 1_555 E O71 LMP . A LMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc9 C ZN ZN . A ZN 301 1_555 E O72 LMP . A LMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc10 D ZN ZN . A ZN 302 1_555 E O72 LMP . A LMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc11 D ZN ZN . A ZN 302 1_555 E N4 LMP . A LMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc12 B NE2 HIS 92 B HIS 120 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc13 B ND1 HIS 94 B HIS 122 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc14 B OD2 ASP 96 B ASP 124 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc15 B NE2 HIS 161 B HIS 189 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc16 B SG CYS 180 B CYS 208 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc17 B NE2 HIS 222 B HIS 250 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc18 G ZN ZN . B ZN 301 1_555 I O72 LMP . B LMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc19 H ZN ZN . B ZN 302 1_555 I O32 LMP . B LMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc20 H ZN ZN . B ZN 302 1_555 I N4 LMP . B LMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 345 n n 
S O2 SO4 doub 346 n n 
S O3 SO4 sing 347 n n 
S O4 SO4 sing 348 n n 
#
_atom_sites.entry_id                     5YPN 
_atom_sites.fract_transf_matrix[1][1]    0.01455 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013604 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 301 301 ZN ZN . 
D 2 ZN A 1 302 302 ZN ZN . 
E 3 LMP A 1 303 303 LMP ME1 . 
F 4 SO4 A 1 304 1 SO4 SO4 . 
G 2 ZN B 1 301 301 ZN ZN . 
H 2 ZN B 1 302 302 ZN ZN . 
I 3 LMP B 1 303 303 LMP ME1 . 
J 4 SO4 B 1 304 2 SO4 SO4 . 
K 5 HOH A 1 401 169 HOH HOH . 
K 5 HOH A 2 402 67 HOH HOH . 
K 5 HOH A 3 403 138 HOH HOH . 
K 5 HOH A 4 404 18 HOH HOH . 
K 5 HOH A 5 405 72 HOH HOH . 
K 5 HOH A 6 406 119 HOH HOH . 
K 5 HOH A 7 407 105 HOH HOH . 
K 5 HOH A 8 408 163 HOH HOH . 
K 5 HOH A 9 409 54 HOH HOH . 
K 5 HOH A 10 410 64 HOH HOH . 
K 5 HOH A 11 411 1 HOH HOH . 
K 5 HOH A 12 412 97 HOH HOH . 
K 5 HOH A 13 413 32 HOH HOH . 
K 5 HOH A 14 414 68 HOH HOH . 
K 5 HOH A 15 415 44 HOH HOH . 
K 5 HOH A 16 416 6 HOH HOH . 
K 5 HOH A 17 417 49 HOH HOH . 
K 5 HOH A 18 418 2 HOH HOH . 
K 5 HOH A 19 419 78 HOH HOH . 
K 5 HOH A 20 420 70 HOH HOH . 
K 5 HOH A 21 421 14 HOH HOH . 
K 5 HOH A 22 422 7 HOH HOH . 
K 5 HOH A 23 423 21 HOH HOH . 
K 5 HOH A 24 424 152 HOH HOH . 
K 5 HOH A 25 425 71 HOH HOH . 
K 5 HOH A 26 426 98 HOH HOH . 
K 5 HOH A 27 427 94 HOH HOH . 
K 5 HOH A 28 428 147 HOH HOH . 
K 5 HOH A 29 429 36 HOH HOH . 
K 5 HOH A 30 430 50 HOH HOH . 
K 5 HOH A 31 431 59 HOH HOH . 
K 5 HOH A 32 432 172 HOH HOH . 
K 5 HOH A 33 433 26 HOH HOH . 
K 5 HOH A 34 434 61 HOH HOH . 
K 5 HOH A 35 435 19 HOH HOH . 
K 5 HOH A 36 436 112 HOH HOH . 
K 5 HOH A 37 437 4 HOH HOH . 
K 5 HOH A 38 438 22 HOH HOH . 
K 5 HOH A 39 439 85 HOH HOH . 
K 5 HOH A 40 440 133 HOH HOH . 
K 5 HOH A 41 441 143 HOH HOH . 
K 5 HOH A 42 442 176 HOH HOH . 
K 5 HOH A 43 443 56 HOH HOH . 
K 5 HOH A 44 444 134 HOH HOH . 
K 5 HOH A 45 445 121 HOH HOH . 
K 5 HOH A 46 446 99 HOH HOH . 
K 5 HOH A 47 447 140 HOH HOH . 
K 5 HOH A 48 448 11 HOH HOH . 
K 5 HOH A 49 449 27 HOH HOH . 
K 5 HOH A 50 450 157 HOH HOH . 
K 5 HOH A 51 451 86 HOH HOH . 
K 5 HOH A 52 452 118 HOH HOH . 
K 5 HOH A 53 453 37 HOH HOH . 
K 5 HOH A 54 454 135 HOH HOH . 
K 5 HOH A 55 455 35 HOH HOH . 
K 5 HOH A 56 456 130 HOH HOH . 
K 5 HOH A 57 457 132 HOH HOH . 
K 5 HOH A 58 458 58 HOH HOH . 
K 5 HOH A 59 459 103 HOH HOH . 
K 5 HOH A 60 460 164 HOH HOH . 
K 5 HOH A 61 461 84 HOH HOH . 
K 5 HOH A 62 462 24 HOH HOH . 
K 5 HOH A 63 463 125 HOH HOH . 
K 5 HOH A 64 464 23 HOH HOH . 
K 5 HOH A 65 465 106 HOH HOH . 
K 5 HOH A 66 466 29 HOH HOH . 
K 5 HOH A 67 467 10 HOH HOH . 
K 5 HOH A 68 468 51 HOH HOH . 
K 5 HOH A 69 469 107 HOH HOH . 
K 5 HOH A 70 470 30 HOH HOH . 
K 5 HOH A 71 471 122 HOH HOH . 
K 5 HOH A 72 472 92 HOH HOH . 
K 5 HOH A 73 473 175 HOH HOH . 
K 5 HOH A 74 474 46 HOH HOH . 
K 5 HOH A 75 475 123 HOH HOH . 
K 5 HOH A 76 476 34 HOH HOH . 
K 5 HOH A 77 477 155 HOH HOH . 
K 5 HOH A 78 478 159 HOH HOH . 
K 5 HOH A 79 479 168 HOH HOH . 
K 5 HOH A 80 480 114 HOH HOH . 
K 5 HOH A 81 481 77 HOH HOH . 
K 5 HOH A 82 482 158 HOH HOH . 
K 5 HOH A 83 483 160 HOH HOH . 
K 5 HOH A 84 484 173 HOH HOH . 
K 5 HOH A 85 485 166 HOH HOH . 
K 5 HOH A 86 486 142 HOH HOH . 
K 5 HOH A 87 487 144 HOH HOH . 
K 5 HOH A 88 488 167 HOH HOH . 
K 5 HOH A 89 489 60 HOH HOH . 
K 5 HOH A 90 490 128 HOH HOH . 
K 5 HOH A 91 491 174 HOH HOH . 
K 5 HOH A 92 492 126 HOH HOH . 
K 5 HOH A 93 493 146 HOH HOH . 
K 5 HOH A 94 494 162 HOH HOH . 
K 5 HOH A 95 495 151 HOH HOH . 
K 5 HOH A 96 496 150 HOH HOH . 
L 5 HOH B 1 401 156 HOH HOH . 
L 5 HOH B 2 402 47 HOH HOH . 
L 5 HOH B 3 403 33 HOH HOH . 
L 5 HOH B 4 404 141 HOH HOH . 
L 5 HOH B 5 405 91 HOH HOH . 
L 5 HOH B 6 406 109 HOH HOH . 
L 5 HOH B 7 407 52 HOH HOH . 
L 5 HOH B 8 408 65 HOH HOH . 
L 5 HOH B 9 409 79 HOH HOH . 
L 5 HOH B 10 410 131 HOH HOH . 
L 5 HOH B 11 411 117 HOH HOH . 
L 5 HOH B 12 412 110 HOH HOH . 
L 5 HOH B 13 413 82 HOH HOH . 
L 5 HOH B 14 414 43 HOH HOH . 
L 5 HOH B 15 415 66 HOH HOH . 
L 5 HOH B 16 416 136 HOH HOH . 
L 5 HOH B 17 417 129 HOH HOH . 
L 5 HOH B 18 418 53 HOH HOH . 
L 5 HOH B 19 419 73 HOH HOH . 
L 5 HOH B 20 420 45 HOH HOH . 
L 5 HOH B 21 421 16 HOH HOH . 
L 5 HOH B 22 422 20 HOH HOH . 
L 5 HOH B 23 423 13 HOH HOH . 
L 5 HOH B 24 424 17 HOH HOH . 
L 5 HOH B 25 425 41 HOH HOH . 
L 5 HOH B 26 426 75 HOH HOH . 
L 5 HOH B 27 427 115 HOH HOH . 
L 5 HOH B 28 428 81 HOH HOH . 
L 5 HOH B 29 429 137 HOH HOH . 
L 5 HOH B 30 430 116 HOH HOH . 
L 5 HOH B 31 431 9 HOH HOH . 
L 5 HOH B 32 432 93 HOH HOH . 
L 5 HOH B 33 433 15 HOH HOH . 
L 5 HOH B 34 434 39 HOH HOH . 
L 5 HOH B 35 435 127 HOH HOH . 
L 5 HOH B 36 436 3 HOH HOH . 
L 5 HOH B 37 437 101 HOH HOH . 
L 5 HOH B 38 438 100 HOH HOH . 
L 5 HOH B 39 439 102 HOH HOH . 
L 5 HOH B 40 440 74 HOH HOH . 
L 5 HOH B 41 441 149 HOH HOH . 
L 5 HOH B 42 442 139 HOH HOH . 
L 5 HOH B 43 443 95 HOH HOH . 
L 5 HOH B 44 444 12 HOH HOH . 
L 5 HOH B 45 445 31 HOH HOH . 
L 5 HOH B 46 446 113 HOH HOH . 
L 5 HOH B 47 447 145 HOH HOH . 
L 5 HOH B 48 448 42 HOH HOH . 
L 5 HOH B 49 449 38 HOH HOH . 
L 5 HOH B 50 450 62 HOH HOH . 
L 5 HOH B 51 451 28 HOH HOH . 
L 5 HOH B 52 452 124 HOH HOH . 
L 5 HOH B 53 453 88 HOH HOH . 
L 5 HOH B 54 454 80 HOH HOH . 
L 5 HOH B 55 455 120 HOH HOH . 
L 5 HOH B 56 456 25 HOH HOH . 
L 5 HOH B 57 457 165 HOH HOH . 
L 5 HOH B 58 458 170 HOH HOH . 
L 5 HOH B 59 459 153 HOH HOH . 
L 5 HOH B 60 460 5 HOH HOH . 
L 5 HOH B 61 461 148 HOH HOH . 
L 5 HOH B 62 462 55 HOH HOH . 
L 5 HOH B 63 463 108 HOH HOH . 
L 5 HOH B 64 464 76 HOH HOH . 
L 5 HOH B 65 465 57 HOH HOH . 
L 5 HOH B 66 466 87 HOH HOH . 
L 5 HOH B 67 467 83 HOH HOH . 
L 5 HOH B 68 468 69 HOH HOH . 
L 5 HOH B 69 469 8 HOH HOH . 
L 5 HOH B 70 470 161 HOH HOH . 
L 5 HOH B 71 471 96 HOH HOH . 
L 5 HOH B 72 472 111 HOH HOH . 
L 5 HOH B 73 473 104 HOH HOH . 
L 5 HOH B 74 474 89 HOH HOH . 
L 5 HOH B 75 475 90 HOH HOH . 
L 5 HOH B 76 476 40 HOH HOH . 
L 5 HOH B 77 477 171 HOH HOH . 
L 5 HOH B 78 478 154 HOH HOH . 
L 5 HOH B 79 479 63 HOH HOH . 
L 5 HOH B 80 480 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . J 4 -27.447 101.21 74.307 1 72.86 ? S SO4 304 B 1 
HETATM 2 O O1 SO4 . . . J 4 -27.145 101.091 72.884 1 73.25 ? O1 SO4 304 B 1 
HETATM 3 O O2 SO4 . . . J 4 -28.137 102.473 74.549 1 72.83 ? O2 SO4 304 B 1 
HETATM 4 O O3 SO4 . . . J 4 -26.205 101.173 75.073 1 72.61 ? O3 SO4 304 B 1 
HETATM 5 O O4 SO4 . . . J 4 -28.306 100.104 74.722 1 73.04 ? O4 SO4 304 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#