data_5YPP
#
_model_server_result.job_id            4PZ1LRh2E6XdeLgyTRXHGA 
_model_server_result.datetime_utc      '2024-11-06 00:30:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ypp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":101}' 
#
_entry.id    5YPP 
#
_exptl.entry_id    5YPP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.99 
_cell.angle_gamma         90 
_cell.entry_id            5YPP 
_cell.length_a            66.03 
_cell.length_b            80.62 
_cell.length_c            66.04 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YPP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,K,W,X 1 1 
C,D,L,M,N,O,P,Y,Z 2 1 
E,F,Q,R,S,T,U,V,AA,BA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 R N N 
? 3 U N N 
? 3 V N N 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 243 n n 
C1 C2 PEG sing 244 n n 
C1 H11 PEG sing 245 n n 
C1 H12 PEG sing 246 n n 
O1 HO1 PEG sing 247 n n 
C2 O2 PEG sing 248 n n 
C2 H21 PEG sing 249 n n 
C2 H22 PEG sing 250 n n 
O2 C3 PEG sing 251 n n 
C3 C4 PEG sing 252 n n 
C3 H31 PEG sing 253 n n 
C3 H32 PEG sing 254 n n 
C4 O4 PEG sing 255 n n 
C4 H41 PEG sing 256 n n 
C4 H42 PEG sing 257 n n 
O4 HO4 PEG sing 258 n n 
#
_atom_sites.entry_id                     5YPP 
_atom_sites.fract_transf_matrix[1][1]    0.015145 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00874 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012404 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017483 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 VAL A 1 101 101 VAL VAL . 
H 2 VAL A 1 102 101 VAL VAL . 
I 3 PEG A 1 103 3 PEG PEG . 
J 3 PEG B 1 101 1 PEG PEG . 
K 3 PEG B 1 102 2 PEG PEG . 
L 2 VAL C 1 101 101 VAL VAL . 
M 2 VAL C 1 102 101 VAL VAL . 
N 3 PEG C 1 103 4 PEG PEG . 
O 3 PEG C 1 104 5 PEG PEG . 
P 3 PEG D 1 101 6 PEG PEG . 
Q 2 VAL E 1 101 101 VAL VAL . 
R 3 PEG E 1 102 8 PEG PEG . 
S 2 VAL F 1 101 101 VAL VAL . 
T 4 ACT F 1 102 2 ACT ACT . 
U 3 PEG F 1 103 7 PEG PEG . 
V 3 PEG F 1 104 9 PEG PEG . 
W 5 HOH A 1 201 20 HOH HOH . 
W 5 HOH A 2 202 105 HOH HOH . 
W 5 HOH A 3 203 44 HOH HOH . 
W 5 HOH A 4 204 39 HOH HOH . 
W 5 HOH A 5 205 2 HOH HOH . 
W 5 HOH A 6 206 86 HOH HOH . 
W 5 HOH A 7 207 12 HOH HOH . 
W 5 HOH A 8 208 137 HOH HOH . 
W 5 HOH A 9 209 1 HOH HOH . 
W 5 HOH A 10 210 70 HOH HOH . 
W 5 HOH A 11 211 45 HOH HOH . 
W 5 HOH A 12 212 34 HOH HOH . 
W 5 HOH A 13 213 149 HOH HOH . 
W 5 HOH A 14 214 79 HOH HOH . 
W 5 HOH A 15 215 51 HOH HOH . 
W 5 HOH A 16 216 82 HOH HOH . 
W 5 HOH A 17 217 139 HOH HOH . 
W 5 HOH A 18 218 155 HOH HOH . 
W 5 HOH A 19 219 178 HOH HOH . 
W 5 HOH A 20 220 69 HOH HOH . 
W 5 HOH A 21 221 161 HOH HOH . 
W 5 HOH A 22 222 84 HOH HOH . 
W 5 HOH A 23 223 115 HOH HOH . 
W 5 HOH A 24 224 75 HOH HOH . 
W 5 HOH A 25 225 187 HOH HOH . 
X 5 HOH B 1 201 28 HOH HOH . 
X 5 HOH B 2 202 190 HOH HOH . 
X 5 HOH B 3 203 9 HOH HOH . 
X 5 HOH B 4 204 61 HOH HOH . 
X 5 HOH B 5 205 126 HOH HOH . 
X 5 HOH B 6 206 116 HOH HOH . 
X 5 HOH B 7 207 88 HOH HOH . 
X 5 HOH B 8 208 89 HOH HOH . 
X 5 HOH B 9 209 192 HOH HOH . 
X 5 HOH B 10 210 87 HOH HOH . 
X 5 HOH B 11 211 140 HOH HOH . 
X 5 HOH B 12 212 64 HOH HOH . 
X 5 HOH B 13 213 25 HOH HOH . 
X 5 HOH B 14 214 72 HOH HOH . 
X 5 HOH B 15 215 114 HOH HOH . 
X 5 HOH B 16 216 78 HOH HOH . 
X 5 HOH B 17 217 95 HOH HOH . 
X 5 HOH B 18 218 163 HOH HOH . 
Y 5 HOH C 1 201 173 HOH HOH . 
Y 5 HOH C 2 202 59 HOH HOH . 
Y 5 HOH C 3 203 16 HOH HOH . 
Y 5 HOH C 4 204 174 HOH HOH . 
Y 5 HOH C 5 205 30 HOH HOH . 
Y 5 HOH C 6 206 8 HOH HOH . 
Y 5 HOH C 7 207 62 HOH HOH . 
Y 5 HOH C 8 208 119 HOH HOH . 
Y 5 HOH C 9 209 191 HOH HOH . 
Y 5 HOH C 10 210 36 HOH HOH . 
Y 5 HOH C 11 211 179 HOH HOH . 
Y 5 HOH C 12 212 11 HOH HOH . 
Y 5 HOH C 13 213 134 HOH HOH . 
Y 5 HOH C 14 214 90 HOH HOH . 
Y 5 HOH C 15 215 145 HOH HOH . 
Y 5 HOH C 16 216 151 HOH HOH . 
Y 5 HOH C 17 217 167 HOH HOH . 
Y 5 HOH C 18 218 68 HOH HOH . 
Y 5 HOH C 19 219 185 HOH HOH . 
Z 5 HOH D 1 201 13 HOH HOH . 
Z 5 HOH D 2 202 29 HOH HOH . 
Z 5 HOH D 3 203 26 HOH HOH . 
Z 5 HOH D 4 204 7 HOH HOH . 
Z 5 HOH D 5 205 6 HOH HOH . 
Z 5 HOH D 6 206 98 HOH HOH . 
Z 5 HOH D 7 207 120 HOH HOH . 
Z 5 HOH D 8 208 176 HOH HOH . 
Z 5 HOH D 9 209 152 HOH HOH . 
Z 5 HOH D 10 210 15 HOH HOH . 
Z 5 HOH D 11 211 153 HOH HOH . 
Z 5 HOH D 12 212 100 HOH HOH . 
Z 5 HOH D 13 213 93 HOH HOH . 
Z 5 HOH D 14 214 47 HOH HOH . 
Z 5 HOH D 15 215 96 HOH HOH . 
Z 5 HOH D 16 216 175 HOH HOH . 
Z 5 HOH D 17 217 188 HOH HOH . 
Z 5 HOH D 18 218 102 HOH HOH . 
Z 5 HOH D 19 219 165 HOH HOH . 
Z 5 HOH D 20 220 50 HOH HOH . 
Z 5 HOH D 21 221 32 HOH HOH . 
Z 5 HOH D 22 222 97 HOH HOH . 
Z 5 HOH D 23 223 101 HOH HOH . 
Z 5 HOH D 24 224 124 HOH HOH . 
Z 5 HOH D 25 225 181 HOH HOH . 
AA 5 HOH E 1 201 3 HOH HOH . 
AA 5 HOH E 2 202 183 HOH HOH . 
AA 5 HOH E 3 203 122 HOH HOH . 
AA 5 HOH E 4 204 186 HOH HOH . 
AA 5 HOH E 5 205 4 HOH HOH . 
AA 5 HOH E 6 206 136 HOH HOH . 
AA 5 HOH E 7 207 18 HOH HOH . 
AA 5 HOH E 8 208 24 HOH HOH . 
AA 5 HOH E 9 209 10 HOH HOH . 
AA 5 HOH E 10 210 123 HOH HOH . 
AA 5 HOH E 11 211 55 HOH HOH . 
AA 5 HOH E 12 212 170 HOH HOH . 
AA 5 HOH E 13 213 76 HOH HOH . 
AA 5 HOH E 14 214 108 HOH HOH . 
AA 5 HOH E 15 215 27 HOH HOH . 
AA 5 HOH E 16 216 49 HOH HOH . 
AA 5 HOH E 17 217 112 HOH HOH . 
AA 5 HOH E 18 218 54 HOH HOH . 
AA 5 HOH E 19 219 157 HOH HOH . 
AA 5 HOH E 20 220 169 HOH HOH . 
AA 5 HOH E 21 221 158 HOH HOH . 
AA 5 HOH E 22 222 109 HOH HOH . 
AA 5 HOH E 23 223 182 HOH HOH . 
AA 5 HOH E 24 224 148 HOH HOH . 
AA 5 HOH E 25 225 110 HOH HOH . 
BA 5 HOH F 1 201 66 HOH HOH . 
BA 5 HOH F 2 202 177 HOH HOH . 
BA 5 HOH F 3 203 193 HOH HOH . 
BA 5 HOH F 4 204 104 HOH HOH . 
BA 5 HOH F 5 205 133 HOH HOH . 
BA 5 HOH F 6 206 130 HOH HOH . 
BA 5 HOH F 7 207 17 HOH HOH . 
BA 5 HOH F 8 208 14 HOH HOH . 
BA 5 HOH F 9 209 106 HOH HOH . 
BA 5 HOH F 10 210 146 HOH HOH . 
BA 5 HOH F 11 211 141 HOH HOH . 
BA 5 HOH F 12 212 189 HOH HOH . 
BA 5 HOH F 13 213 41 HOH HOH . 
BA 5 HOH F 14 214 168 HOH HOH . 
BA 5 HOH F 15 215 31 HOH HOH . 
BA 5 HOH F 16 216 71 HOH HOH . 
BA 5 HOH F 17 217 147 HOH HOH . 
BA 5 HOH F 18 218 156 HOH HOH . 
BA 5 HOH F 19 219 166 HOH HOH . 
BA 5 HOH F 20 220 142 HOH HOH . 
BA 5 HOH F 21 221 184 HOH HOH . 
BA 5 HOH F 22 222 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . P 3 -25.427 40.942 21.555 0.75 31.4 ? C1 PEG 101 D 1 
HETATM 2 O O1 PEG . . . P 3 -26.363 39.898 21.524 0.75 27.38 ? O1 PEG 101 D 1 
HETATM 3 C C2 PEG . . . P 3 -26.111 42.261 21.915 0.75 35.29 ? C2 PEG 101 D 1 
HETATM 4 O O2 PEG . . . P 3 -25.307 42.984 22.811 0.75 38.46 ? O2 PEG 101 D 1 
HETATM 5 C C3 PEG . . . P 3 -25.88 44.163 23.303 0.75 35.54 ? C3 PEG 101 D 1 
HETATM 6 C C4 PEG . . . P 3 -25.416 45.346 22.456 0.75 31.55 ? C4 PEG 101 D 1 
HETATM 7 O O4 PEG . . . P 3 -26.022 46.532 22.886 0.75 26.23 ? O4 PEG 101 D 1 
HETATM 8 H H11 PEG . . . P 3 -24.746 40.743 22.216 0.75 37.68 ? H11 PEG 101 D 1 
HETATM 9 H H12 PEG . . . P 3 -25.011 41.025 20.682 0.75 37.68 ? H12 PEG 101 D 1 
HETATM 10 H HO1 PEG . . . P 3 -25.969 39.16 21.675 0.75 32.86 ? HO1 PEG 101 D 1 
HETATM 11 H H21 PEG . . . P 3 -26.247 42.784 21.11 0.75 42.34 ? H21 PEG 101 D 1 
HETATM 12 H H22 PEG . . . P 3 -26.968 42.076 22.329 0.75 42.34 ? H22 PEG 101 D 1 
HETATM 13 H H31 PEG . . . P 3 -26.847 44.095 23.261 0.75 42.65 ? H31 PEG 101 D 1 
HETATM 14 H H32 PEG . . . P 3 -25.605 44.297 24.223 0.75 42.65 ? H32 PEG 101 D 1 
HETATM 15 H H41 PEG . . . P 3 -24.453 45.434 22.531 0.75 37.86 ? H41 PEG 101 D 1 
HETATM 16 H H42 PEG . . . P 3 -25.651 45.186 21.528 0.75 37.86 ? H42 PEG 101 D 1 
HETATM 17 H HO4 PEG . . . P 3 -25.734 47.183 22.42 0.75 31.48 ? HO4 PEG 101 D 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           17 
#