data_5YPW
#
_model_server_result.job_id            zgV6pxyuBGtJwhN2N7InOQ 
_model_server_result.datetime_utc      '2024-11-27 00:15:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ypw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":102}' 
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_entry.id    5YPW 
#
_exptl.entry_id    5YPW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              117.146 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            VALINE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.37 
_cell.angle_gamma         90 
_cell.entry_id            5YPW 
_cell.length_a            63.04 
_cell.length_b            74.67 
_cell.length_c            88.81 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5YPW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,Q,R 1 1 
C,D,K,L,S,T 2 1 
E,F,M,N,U,V 3 1 
G,H,O,P,W,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C5 H11 N O2' 
_chem_comp.formula_weight    117.146 
_chem_comp.id                VAL 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              VALINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA VAL sing 334 n n 
N H VAL sing 335 n n 
N H2 VAL sing 336 n n 
CA C VAL sing 337 n n 
CA CB VAL sing 338 n n 
CA HA VAL sing 339 n n 
C O VAL doub 340 n n 
C OXT VAL sing 341 n n 
CB CG1 VAL sing 342 n n 
CB CG2 VAL sing 343 n n 
CB HB VAL sing 344 n n 
CG1 HG11 VAL sing 345 n n 
CG1 HG12 VAL sing 346 n n 
CG1 HG13 VAL sing 347 n n 
CG2 HG21 VAL sing 348 n n 
CG2 HG22 VAL sing 349 n n 
CG2 HG23 VAL sing 350 n n 
OXT HXT VAL sing 351 n n 
#
_atom_sites.entry_id                     5YPW 
_atom_sites.fract_transf_matrix[1][1]    0.015863 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002618 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013392 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011412 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 VAL A 1 101 101 VAL VAL . 
J 2 VAL B 1 101 101 VAL VAL . 
K 2 VAL C 1 101 101 VAL VAL . 
L 2 VAL C 1 102 101 VAL VAL . 
M 2 VAL E 1 101 101 VAL VAL . 
N 2 VAL F 1 101 101 VAL VAL . 
O 2 VAL G 1 101 101 VAL VAL . 
P 2 VAL H 1 101 101 VAL VAL . 
Q 3 HOH A 1 201 45 HOH HOH . 
Q 3 HOH A 2 202 135 HOH HOH . 
Q 3 HOH A 3 203 28 HOH HOH . 
Q 3 HOH A 4 204 22 HOH HOH . 
Q 3 HOH A 5 205 175 HOH HOH . 
Q 3 HOH A 6 206 59 HOH HOH . 
Q 3 HOH A 7 207 73 HOH HOH . 
Q 3 HOH A 8 208 54 HOH HOH . 
Q 3 HOH A 9 209 8 HOH HOH . 
Q 3 HOH A 10 210 58 HOH HOH . 
Q 3 HOH A 11 211 94 HOH HOH . 
Q 3 HOH A 12 212 183 HOH HOH . 
Q 3 HOH A 13 213 182 HOH HOH . 
Q 3 HOH A 14 214 197 HOH HOH . 
R 3 HOH B 1 201 164 HOH HOH . 
R 3 HOH B 2 202 10 HOH HOH . 
R 3 HOH B 3 203 177 HOH HOH . 
R 3 HOH B 4 204 66 HOH HOH . 
R 3 HOH B 5 205 202 HOH HOH . 
R 3 HOH B 6 206 5 HOH HOH . 
R 3 HOH B 7 207 16 HOH HOH . 
R 3 HOH B 8 208 95 HOH HOH . 
R 3 HOH B 9 209 34 HOH HOH . 
R 3 HOH B 10 210 103 HOH HOH . 
R 3 HOH B 11 211 193 HOH HOH . 
R 3 HOH B 12 212 180 HOH HOH . 
S 3 HOH C 1 201 37 HOH HOH . 
S 3 HOH C 2 202 174 HOH HOH . 
S 3 HOH C 3 203 11 HOH HOH . 
S 3 HOH C 4 204 81 HOH HOH . 
S 3 HOH C 5 205 210 HOH HOH . 
S 3 HOH C 6 206 209 HOH HOH . 
S 3 HOH C 7 207 205 HOH HOH . 
S 3 HOH C 8 208 201 HOH HOH . 
T 3 HOH D 1 101 114 HOH HOH . 
U 3 HOH E 1 201 1 HOH HOH . 
U 3 HOH E 2 202 13 HOH HOH . 
U 3 HOH E 3 203 19 HOH HOH . 
U 3 HOH E 4 204 4 HOH HOH . 
U 3 HOH E 5 205 53 HOH HOH . 
U 3 HOH E 6 206 77 HOH HOH . 
U 3 HOH E 7 207 27 HOH HOH . 
U 3 HOH E 8 208 200 HOH HOH . 
U 3 HOH E 9 209 85 HOH HOH . 
U 3 HOH E 10 210 100 HOH HOH . 
U 3 HOH E 11 211 32 HOH HOH . 
U 3 HOH E 12 212 50 HOH HOH . 
U 3 HOH E 13 213 67 HOH HOH . 
U 3 HOH E 14 214 186 HOH HOH . 
U 3 HOH E 15 215 188 HOH HOH . 
U 3 HOH E 16 216 194 HOH HOH . 
U 3 HOH E 17 217 72 HOH HOH . 
V 3 HOH F 1 201 2 HOH HOH . 
V 3 HOH F 2 202 92 HOH HOH . 
V 3 HOH F 3 203 133 HOH HOH . 
V 3 HOH F 4 204 165 HOH HOH . 
V 3 HOH F 5 205 97 HOH HOH . 
V 3 HOH F 6 206 25 HOH HOH . 
V 3 HOH F 7 207 31 HOH HOH . 
V 3 HOH F 8 208 6 HOH HOH . 
V 3 HOH F 9 209 41 HOH HOH . 
V 3 HOH F 10 210 23 HOH HOH . 
V 3 HOH F 11 211 40 HOH HOH . 
V 3 HOH F 12 212 173 HOH HOH . 
V 3 HOH F 13 213 38 HOH HOH . 
V 3 HOH F 14 214 74 HOH HOH . 
V 3 HOH F 15 215 9 HOH HOH . 
V 3 HOH F 16 216 46 HOH HOH . 
V 3 HOH F 17 217 47 HOH HOH . 
V 3 HOH F 18 218 199 HOH HOH . 
V 3 HOH F 19 219 102 HOH HOH . 
W 3 HOH G 1 201 206 HOH HOH . 
W 3 HOH G 2 202 88 HOH HOH . 
W 3 HOH G 3 203 125 HOH HOH . 
W 3 HOH G 4 204 211 HOH HOH . 
W 3 HOH G 5 205 39 HOH HOH . 
W 3 HOH G 6 206 36 HOH HOH . 
W 3 HOH G 7 207 187 HOH HOH . 
X 3 HOH H 1 201 51 HOH HOH . 
X 3 HOH H 2 202 154 HOH HOH . 
X 3 HOH H 3 203 105 HOH HOH . 
X 3 HOH H 4 204 7 HOH HOH . 
X 3 HOH H 5 205 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N VAL . . . L 2 3.048 -0.181 -38.032 1 23.75 ? N VAL 102 C 1 
HETATM 2 C CA VAL . . . L 2 2.591 -0.44 -36.666 1 28.19 ? CA VAL 102 C 1 
HETATM 3 C C VAL . . . L 2 2.675 0.85 -35.846 1 31.52 ? C VAL 102 C 1 
HETATM 4 O O VAL . . . L 2 3.164 1.853 -36.373 1 31.02 ? O VAL 102 C 1 
HETATM 5 C CB VAL . . . L 2 3.404 -1.603 -36.011 1 28.43 ? CB VAL 102 C 1 
HETATM 6 C CG1 VAL . . . L 2 3.215 -2.897 -36.816 1 27.56 ? CG1 VAL 102 C 1 
HETATM 7 C CG2 VAL . . . L 2 4.886 -1.236 -35.888 1 19.58 ? CG2 VAL 102 C 1 
HETATM 8 O OXT VAL . . . L 2 2.272 0.94 -34.67 1 29.01 ? OXT VAL 102 C 1 
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_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
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