data_5YPY # _model_server_result.job_id uTovYV0pxOBmtTL7BQOqIw _model_server_result.datetime_utc '2024-11-06 03:06:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ypy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 5YPY # _exptl.entry_id 5YPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.146 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description VALINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.58 _cell.angle_gamma 90 _cell.entry_id 5YPY _cell.length_a 110.519 _cell.length_b 74.51 _cell.length_c 63.27 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id VAL _chem_comp.mon_nstd_flag y _chem_comp.name VALINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA VAL sing 334 n n N H VAL sing 335 n n N H2 VAL sing 336 n n CA C VAL sing 337 n n CA CB VAL sing 338 n n CA HA VAL sing 339 n n C O VAL doub 340 n n C OXT VAL sing 341 n n CB CG1 VAL sing 342 n n CB CG2 VAL sing 343 n n CB HB VAL sing 344 n n CG1 HG11 VAL sing 345 n n CG1 HG12 VAL sing 346 n n CG1 HG13 VAL sing 347 n n CG2 HG21 VAL sing 348 n n CG2 HG22 VAL sing 349 n n CG2 HG23 VAL sing 350 n n OXT HXT VAL sing 351 n n # _atom_sites.entry_id 5YPY _atom_sites.fract_transf_matrix[1][1] 0.009048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001204 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 VAL A 1 101 101 VAL VAL . F 2 VAL B 1 101 101 VAL VAL . G 2 VAL C 1 101 101 VAL VAL . H 2 VAL D 1 101 101 VAL VAL . I 3 HOH A 1 201 89 HOH HOH . I 3 HOH A 2 202 22 HOH HOH . I 3 HOH A 3 203 70 HOH HOH . I 3 HOH A 4 204 53 HOH HOH . I 3 HOH A 5 205 101 HOH HOH . I 3 HOH A 6 206 16 HOH HOH . I 3 HOH A 7 207 45 HOH HOH . I 3 HOH A 8 208 11 HOH HOH . I 3 HOH A 9 209 55 HOH HOH . I 3 HOH A 10 210 100 HOH HOH . I 3 HOH A 11 211 41 HOH HOH . I 3 HOH A 12 212 5 HOH HOH . I 3 HOH A 13 213 19 HOH HOH . I 3 HOH A 14 214 64 HOH HOH . I 3 HOH A 15 215 30 HOH HOH . I 3 HOH A 16 216 2 HOH HOH . I 3 HOH A 17 217 24 HOH HOH . I 3 HOH A 18 218 25 HOH HOH . I 3 HOH A 19 219 114 HOH HOH . I 3 HOH A 20 220 116 HOH HOH . I 3 HOH A 21 221 109 HOH HOH . J 3 HOH B 1 201 99 HOH HOH . J 3 HOH B 2 202 48 HOH HOH . J 3 HOH B 3 203 42 HOH HOH . J 3 HOH B 4 204 27 HOH HOH . J 3 HOH B 5 205 26 HOH HOH . J 3 HOH B 6 206 6 HOH HOH . J 3 HOH B 7 207 63 HOH HOH . J 3 HOH B 8 208 60 HOH HOH . J 3 HOH B 9 209 14 HOH HOH . J 3 HOH B 10 210 43 HOH HOH . J 3 HOH B 11 211 51 HOH HOH . J 3 HOH B 12 212 102 HOH HOH . J 3 HOH B 13 213 3 HOH HOH . J 3 HOH B 14 214 90 HOH HOH . J 3 HOH B 15 215 10 HOH HOH . J 3 HOH B 16 216 39 HOH HOH . J 3 HOH B 17 217 67 HOH HOH . J 3 HOH B 18 218 112 HOH HOH . J 3 HOH B 19 219 86 HOH HOH . J 3 HOH B 20 220 104 HOH HOH . J 3 HOH B 21 221 111 HOH HOH . J 3 HOH B 22 222 103 HOH HOH . K 3 HOH C 1 201 15 HOH HOH . K 3 HOH C 2 202 4 HOH HOH . K 3 HOH C 3 203 13 HOH HOH . K 3 HOH C 4 204 1 HOH HOH . K 3 HOH C 5 205 85 HOH HOH . K 3 HOH C 6 206 105 HOH HOH . K 3 HOH C 7 207 59 HOH HOH . K 3 HOH C 8 208 113 HOH HOH . L 3 HOH D 1 201 92 HOH HOH . L 3 HOH D 2 202 21 HOH HOH . L 3 HOH D 3 203 36 HOH HOH . L 3 HOH D 4 204 9 HOH HOH . L 3 HOH D 5 205 20 HOH HOH . L 3 HOH D 6 206 8 HOH HOH . L 3 HOH D 7 207 28 HOH HOH . L 3 HOH D 8 208 12 HOH HOH . L 3 HOH D 9 209 52 HOH HOH . L 3 HOH D 10 210 47 HOH HOH . L 3 HOH D 11 211 96 HOH HOH . L 3 HOH D 12 212 78 HOH HOH . L 3 HOH D 13 213 106 HOH HOH . L 3 HOH D 14 214 93 HOH HOH . L 3 HOH D 15 215 95 HOH HOH . L 3 HOH D 16 216 97 HOH HOH . L 3 HOH D 17 217 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N VAL . . . E 2 -16.576 19.171 29.721 1 45.23 ? N VAL 101 A 1 HETATM 2 C CA VAL . . . E 2 -17.238 19.03 31.022 1 46.97 ? CA VAL 101 A 1 HETATM 3 C C VAL . . . E 2 -17.513 17.547 31.31 1 45.63 ? C VAL 101 A 1 HETATM 4 O O VAL . . . E 2 -17.205 16.702 30.438 1 41.38 ? O VAL 101 A 1 HETATM 5 C CB VAL . . . E 2 -18.534 19.849 31.072 1 40.98 ? CB VAL 101 A 1 HETATM 6 C CG1 VAL . . . E 2 -18.237 21.358 30.83 1 39.77 ? CG1 VAL 101 A 1 HETATM 7 C CG2 VAL . . . E 2 -19.537 19.335 30.05 1 35.89 ? CG2 VAL 101 A 1 HETATM 8 O OXT VAL . . . E 2 -18.057 17.18 32.375 1 41.18 ? OXT VAL 101 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #