data_5YQN # _model_server_result.job_id jRa67-ZfvYDkVde1rxCK0g _model_server_result.datetime_utc '2025-01-10 16:41:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5YQN # _exptl.entry_id 5YQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.18 _cell.angle_gamma 90 _cell.entry_id 5YQN _cell.length_a 35.864 _cell.length_b 73.51 _cell.length_c 55.573 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 145 A CYS 195 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 A SG CYS 150 A CYS 200 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 A SG CYS 171 A CYS 221 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc4 A SG CYS 174 A CYS 224 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YQN _atom_sites.fract_transf_matrix[1][1] 0.027883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002528 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 3 L55 A 1 402 1 L55 L55 . D 4 PEG A 1 403 2 PEG LIG . E 5 HOH A 1 501 323 HOH HOH . E 5 HOH A 2 502 32 HOH HOH . E 5 HOH A 3 503 271 HOH HOH . E 5 HOH A 4 504 244 HOH HOH . E 5 HOH A 5 505 101 HOH HOH . E 5 HOH A 6 506 184 HOH HOH . E 5 HOH A 7 507 84 HOH HOH . E 5 HOH A 8 508 193 HOH HOH . E 5 HOH A 9 509 2 HOH HOH . E 5 HOH A 10 510 273 HOH HOH . E 5 HOH A 11 511 145 HOH HOH . E 5 HOH A 12 512 213 HOH HOH . E 5 HOH A 13 513 1 HOH HOH . E 5 HOH A 14 514 218 HOH HOH . E 5 HOH A 15 515 304 HOH HOH . E 5 HOH A 16 516 43 HOH HOH . E 5 HOH A 17 517 297 HOH HOH . E 5 HOH A 18 518 87 HOH HOH . E 5 HOH A 19 519 48 HOH HOH . E 5 HOH A 20 520 115 HOH HOH . E 5 HOH A 21 521 175 HOH HOH . E 5 HOH A 22 522 299 HOH HOH . E 5 HOH A 23 523 246 HOH HOH . E 5 HOH A 24 524 23 HOH HOH . E 5 HOH A 25 525 300 HOH HOH . E 5 HOH A 26 526 247 HOH HOH . E 5 HOH A 27 527 170 HOH HOH . E 5 HOH A 28 528 318 HOH HOH . E 5 HOH A 29 529 242 HOH HOH . E 5 HOH A 30 530 45 HOH HOH . E 5 HOH A 31 531 180 HOH HOH . E 5 HOH A 32 532 124 HOH HOH . E 5 HOH A 33 533 28 HOH HOH . E 5 HOH A 34 534 40 HOH HOH . E 5 HOH A 35 535 108 HOH HOH . E 5 HOH A 36 536 164 HOH HOH . E 5 HOH A 37 537 20 HOH HOH . E 5 HOH A 38 538 181 HOH HOH . E 5 HOH A 39 539 253 HOH HOH . E 5 HOH A 40 540 30 HOH HOH . E 5 HOH A 41 541 156 HOH HOH . E 5 HOH A 42 542 194 HOH HOH . E 5 HOH A 43 543 226 HOH HOH . E 5 HOH A 44 544 121 HOH HOH . E 5 HOH A 45 545 263 HOH HOH . E 5 HOH A 46 546 110 HOH HOH . E 5 HOH A 47 547 77 HOH HOH . E 5 HOH A 48 548 90 HOH HOH . E 5 HOH A 49 549 272 HOH HOH . E 5 HOH A 50 550 291 HOH HOH . E 5 HOH A 51 551 73 HOH HOH . E 5 HOH A 52 552 204 HOH HOH . E 5 HOH A 53 553 9 HOH HOH . E 5 HOH A 54 554 19 HOH HOH . E 5 HOH A 55 555 11 HOH HOH . E 5 HOH A 56 556 34 HOH HOH . E 5 HOH A 57 557 56 HOH HOH . E 5 HOH A 58 558 199 HOH HOH . E 5 HOH A 59 559 39 HOH HOH . E 5 HOH A 60 560 187 HOH HOH . E 5 HOH A 61 561 53 HOH HOH . E 5 HOH A 62 562 68 HOH HOH . E 5 HOH A 63 563 205 HOH HOH . E 5 HOH A 64 564 42 HOH HOH . E 5 HOH A 65 565 245 HOH HOH . E 5 HOH A 66 566 92 HOH HOH . E 5 HOH A 67 567 16 HOH HOH . E 5 HOH A 68 568 33 HOH HOH . E 5 HOH A 69 569 176 HOH HOH . E 5 HOH A 70 570 59 HOH HOH . E 5 HOH A 71 571 208 HOH HOH . E 5 HOH A 72 572 294 HOH HOH . E 5 HOH A 73 573 71 HOH HOH . E 5 HOH A 74 574 220 HOH HOH . E 5 HOH A 75 575 15 HOH HOH . E 5 HOH A 76 576 319 HOH HOH . E 5 HOH A 77 577 49 HOH HOH . E 5 HOH A 78 578 160 HOH HOH . E 5 HOH A 79 579 233 HOH HOH . E 5 HOH A 80 580 7 HOH HOH . E 5 HOH A 81 581 310 HOH HOH . E 5 HOH A 82 582 21 HOH HOH . E 5 HOH A 83 583 13 HOH HOH . E 5 HOH A 84 584 259 HOH HOH . E 5 HOH A 85 585 17 HOH HOH . E 5 HOH A 86 586 212 HOH HOH . E 5 HOH A 87 587 37 HOH HOH . E 5 HOH A 88 588 103 HOH HOH . E 5 HOH A 89 589 79 HOH HOH . E 5 HOH A 90 590 54 HOH HOH . E 5 HOH A 91 591 139 HOH HOH . E 5 HOH A 92 592 171 HOH HOH . E 5 HOH A 93 593 122 HOH HOH . E 5 HOH A 94 594 86 HOH HOH . E 5 HOH A 95 595 93 HOH HOH . E 5 HOH A 96 596 232 HOH HOH . E 5 HOH A 97 597 25 HOH HOH . E 5 HOH A 98 598 104 HOH HOH . E 5 HOH A 99 599 27 HOH HOH . E 5 HOH A 100 600 29 HOH HOH . E 5 HOH A 101 601 137 HOH HOH . E 5 HOH A 102 602 83 HOH HOH . E 5 HOH A 103 603 57 HOH HOH . E 5 HOH A 104 604 22 HOH HOH . E 5 HOH A 105 605 135 HOH HOH . E 5 HOH A 106 606 3 HOH HOH . E 5 HOH A 107 607 61 HOH HOH . E 5 HOH A 108 608 230 HOH HOH . E 5 HOH A 109 609 177 HOH HOH . E 5 HOH A 110 610 74 HOH HOH . E 5 HOH A 111 611 114 HOH HOH . E 5 HOH A 112 612 146 HOH HOH . E 5 HOH A 113 613 12 HOH HOH . E 5 HOH A 114 614 98 HOH HOH . E 5 HOH A 115 615 154 HOH HOH . E 5 HOH A 116 616 14 HOH HOH . E 5 HOH A 117 617 50 HOH HOH . E 5 HOH A 118 618 100 HOH HOH . E 5 HOH A 119 619 38 HOH HOH . E 5 HOH A 120 620 140 HOH HOH . E 5 HOH A 121 621 4 HOH HOH . E 5 HOH A 122 622 24 HOH HOH . E 5 HOH A 123 623 255 HOH HOH . E 5 HOH A 124 624 35 HOH HOH . E 5 HOH A 125 625 31 HOH HOH . E 5 HOH A 126 626 133 HOH HOH . E 5 HOH A 127 627 5 HOH HOH . E 5 HOH A 128 628 173 HOH HOH . E 5 HOH A 129 629 91 HOH HOH . E 5 HOH A 130 630 113 HOH HOH . E 5 HOH A 131 631 211 HOH HOH . E 5 HOH A 132 632 134 HOH HOH . E 5 HOH A 133 633 322 HOH HOH . E 5 HOH A 134 634 88 HOH HOH . E 5 HOH A 135 635 191 HOH HOH . E 5 HOH A 136 636 260 HOH HOH . E 5 HOH A 137 637 161 HOH HOH . E 5 HOH A 138 638 249 HOH HOH . E 5 HOH A 139 639 70 HOH HOH . E 5 HOH A 140 640 238 HOH HOH . E 5 HOH A 141 641 158 HOH HOH . E 5 HOH A 142 642 202 HOH HOH . E 5 HOH A 143 643 174 HOH HOH . E 5 HOH A 144 644 64 HOH HOH . E 5 HOH A 145 645 308 HOH HOH . E 5 HOH A 146 646 275 HOH HOH . E 5 HOH A 147 647 209 HOH HOH . E 5 HOH A 148 648 85 HOH HOH . E 5 HOH A 149 649 125 HOH HOH . E 5 HOH A 150 650 6 HOH HOH . E 5 HOH A 151 651 231 HOH HOH . E 5 HOH A 152 652 126 HOH HOH . E 5 HOH A 153 653 36 HOH HOH . E 5 HOH A 154 654 138 HOH HOH . E 5 HOH A 155 655 52 HOH HOH . E 5 HOH A 156 656 106 HOH HOH . E 5 HOH A 157 657 289 HOH HOH . E 5 HOH A 158 658 95 HOH HOH . E 5 HOH A 159 659 105 HOH HOH . E 5 HOH A 160 660 286 HOH HOH . E 5 HOH A 161 661 72 HOH HOH . E 5 HOH A 162 662 189 HOH HOH . E 5 HOH A 163 663 248 HOH HOH . E 5 HOH A 164 664 149 HOH HOH . E 5 HOH A 165 665 80 HOH HOH . E 5 HOH A 166 666 117 HOH HOH . E 5 HOH A 167 667 307 HOH HOH . E 5 HOH A 168 668 258 HOH HOH . E 5 HOH A 169 669 55 HOH HOH . E 5 HOH A 170 670 26 HOH HOH . E 5 HOH A 171 671 241 HOH HOH . E 5 HOH A 172 672 221 HOH HOH . E 5 HOH A 173 673 228 HOH HOH . E 5 HOH A 174 674 107 HOH HOH . E 5 HOH A 175 675 185 HOH HOH . E 5 HOH A 176 676 8 HOH HOH . E 5 HOH A 177 677 66 HOH HOH . E 5 HOH A 178 678 143 HOH HOH . E 5 HOH A 179 679 102 HOH HOH . E 5 HOH A 180 680 94 HOH HOH . E 5 HOH A 181 681 67 HOH HOH . E 5 HOH A 182 682 254 HOH HOH . E 5 HOH A 183 683 18 HOH HOH . E 5 HOH A 184 684 111 HOH HOH . E 5 HOH A 185 685 236 HOH HOH . E 5 HOH A 186 686 69 HOH HOH . E 5 HOH A 187 687 10 HOH HOH . E 5 HOH A 188 688 268 HOH HOH . E 5 HOH A 189 689 265 HOH HOH . E 5 HOH A 190 690 47 HOH HOH . E 5 HOH A 191 691 62 HOH HOH . E 5 HOH A 192 692 250 HOH HOH . E 5 HOH A 193 693 237 HOH HOH . E 5 HOH A 194 694 130 HOH HOH . E 5 HOH A 195 695 229 HOH HOH . E 5 HOH A 196 696 316 HOH HOH . E 5 HOH A 197 697 239 HOH HOH . E 5 HOH A 198 698 147 HOH HOH . E 5 HOH A 199 699 142 HOH HOH . E 5 HOH A 200 700 315 HOH HOH . E 5 HOH A 201 701 41 HOH HOH . E 5 HOH A 202 702 235 HOH HOH . E 5 HOH A 203 703 227 HOH HOH . E 5 HOH A 204 704 166 HOH HOH . E 5 HOH A 205 705 210 HOH HOH . E 5 HOH A 206 706 58 HOH HOH . E 5 HOH A 207 707 223 HOH HOH . E 5 HOH A 208 708 283 HOH HOH . E 5 HOH A 209 709 155 HOH HOH . E 5 HOH A 210 710 298 HOH HOH . E 5 HOH A 211 711 151 HOH HOH . E 5 HOH A 212 712 217 HOH HOH . E 5 HOH A 213 713 97 HOH HOH . E 5 HOH A 214 714 129 HOH HOH . E 5 HOH A 215 715 282 HOH HOH . E 5 HOH A 216 716 60 HOH HOH . E 5 HOH A 217 717 109 HOH HOH . E 5 HOH A 218 718 116 HOH HOH . E 5 HOH A 219 719 314 HOH HOH . E 5 HOH A 220 720 163 HOH HOH . E 5 HOH A 221 721 222 HOH HOH . E 5 HOH A 222 722 309 HOH HOH . E 5 HOH A 223 723 128 HOH HOH . E 5 HOH A 224 724 312 HOH HOH . E 5 HOH A 225 725 168 HOH HOH . E 5 HOH A 226 726 320 HOH HOH . E 5 HOH A 227 727 306 HOH HOH . E 5 HOH A 228 728 243 HOH HOH . E 5 HOH A 229 729 99 HOH HOH . E 5 HOH A 230 730 157 HOH HOH . E 5 HOH A 231 731 303 HOH HOH . E 5 HOH A 232 732 150 HOH HOH . E 5 HOH A 233 733 118 HOH HOH . E 5 HOH A 234 734 44 HOH HOH . E 5 HOH A 235 735 274 HOH HOH . E 5 HOH A 236 736 290 HOH HOH . E 5 HOH A 237 737 123 HOH HOH . E 5 HOH A 238 738 317 HOH HOH . E 5 HOH A 239 739 301 HOH HOH . E 5 HOH A 240 740 295 HOH HOH . E 5 HOH A 241 741 51 HOH HOH . E 5 HOH A 242 742 266 HOH HOH . E 5 HOH A 243 743 195 HOH HOH . E 5 HOH A 244 744 183 HOH HOH . E 5 HOH A 245 745 256 HOH HOH . E 5 HOH A 246 746 264 HOH HOH . E 5 HOH A 247 747 76 HOH HOH . E 5 HOH A 248 748 198 HOH HOH . E 5 HOH A 249 749 82 HOH HOH . E 5 HOH A 250 750 251 HOH HOH . E 5 HOH A 251 751 278 HOH HOH . E 5 HOH A 252 752 112 HOH HOH . E 5 HOH A 253 753 281 HOH HOH . E 5 HOH A 254 754 165 HOH HOH . E 5 HOH A 255 755 172 HOH HOH . E 5 HOH A 256 756 132 HOH HOH . E 5 HOH A 257 757 276 HOH HOH . E 5 HOH A 258 758 203 HOH HOH . E 5 HOH A 259 759 252 HOH HOH . E 5 HOH A 260 760 63 HOH HOH . E 5 HOH A 261 761 152 HOH HOH . E 5 HOH A 262 762 269 HOH HOH . E 5 HOH A 263 763 321 HOH HOH . E 5 HOH A 264 764 240 HOH HOH . E 5 HOH A 265 765 89 HOH HOH . E 5 HOH A 266 766 159 HOH HOH . E 5 HOH A 267 767 311 HOH HOH . E 5 HOH A 268 768 313 HOH HOH . E 5 HOH A 269 769 119 HOH HOH . E 5 HOH A 270 770 179 HOH HOH . E 5 HOH A 271 771 292 HOH HOH . E 5 HOH A 272 772 192 HOH HOH . E 5 HOH A 273 773 196 HOH HOH . E 5 HOH A 274 774 162 HOH HOH . E 5 HOH A 275 775 224 HOH HOH . E 5 HOH A 276 776 277 HOH HOH . E 5 HOH A 277 777 96 HOH HOH . E 5 HOH A 278 778 141 HOH HOH . E 5 HOH A 279 779 302 HOH HOH . E 5 HOH A 280 780 127 HOH HOH . E 5 HOH A 281 781 207 HOH HOH . E 5 HOH A 282 782 182 HOH HOH . E 5 HOH A 283 783 287 HOH HOH . E 5 HOH A 284 784 257 HOH HOH . E 5 HOH A 285 785 270 HOH HOH . E 5 HOH A 286 786 188 HOH HOH . E 5 HOH A 287 787 186 HOH HOH . E 5 HOH A 288 788 206 HOH HOH . E 5 HOH A 289 789 153 HOH HOH . E 5 HOH A 290 790 136 HOH HOH . E 5 HOH A 291 791 144 HOH HOH . E 5 HOH A 292 792 197 HOH HOH . E 5 HOH A 293 793 200 HOH HOH . E 5 HOH A 294 794 201 HOH HOH . E 5 HOH A 295 795 190 HOH HOH . E 5 HOH A 296 796 178 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.049 _atom_site.Cartn_y -2.86 _atom_site.Cartn_z -34.372 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #