data_5YQR # _model_server_result.job_id NVZF6FX2M2p_GkqQMtXWHQ _model_server_result.datetime_utc '2024-11-08 04:32:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1301}' # _entry.id 5YQR # _exptl.entry_id 5YQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YQR _cell.length_a 59.543 _cell.length_b 60.103 _cell.length_c 105.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 5YQR _atom_sites.fract_transf_matrix[1][1] 0.016795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2PE A 1 1301 1 2PE 2PE . C 3 HOH A 1 1401 14 HOH HOH . C 3 HOH A 2 1402 15 HOH HOH . C 3 HOH A 3 1403 22 HOH HOH . C 3 HOH A 4 1404 32 HOH HOH . C 3 HOH A 5 1405 1 HOH HOH . C 3 HOH A 6 1406 8 HOH HOH . C 3 HOH A 7 1407 17 HOH HOH . C 3 HOH A 8 1408 13 HOH HOH . C 3 HOH A 9 1409 2 HOH HOH . C 3 HOH A 10 1410 3 HOH HOH . C 3 HOH A 11 1411 26 HOH HOH . C 3 HOH A 12 1412 24 HOH HOH . C 3 HOH A 13 1413 9 HOH HOH . C 3 HOH A 14 1414 5 HOH HOH . C 3 HOH A 15 1415 21 HOH HOH . C 3 HOH A 16 1416 7 HOH HOH . C 3 HOH A 17 1417 6 HOH HOH . C 3 HOH A 18 1418 10 HOH HOH . C 3 HOH A 19 1419 12 HOH HOH . C 3 HOH A 20 1420 30 HOH HOH . C 3 HOH A 21 1421 11 HOH HOH . C 3 HOH A 22 1422 18 HOH HOH . C 3 HOH A 23 1423 4 HOH HOH . C 3 HOH A 24 1424 27 HOH HOH . C 3 HOH A 25 1425 29 HOH HOH . C 3 HOH A 26 1426 28 HOH HOH . C 3 HOH A 27 1427 25 HOH HOH . C 3 HOH A 28 1428 20 HOH HOH . C 3 HOH A 29 1429 16 HOH HOH . C 3 HOH A 30 1430 23 HOH HOH . C 3 HOH A 31 1431 31 HOH HOH . C 3 HOH A 32 1432 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . B 2 11.179 70.81 60.807 1 78.05 ? O1 2PE 1301 A 1 HETATM 2 C C2 2PE . . . B 2 10.822 71.706 59.752 1 78.58 ? C2 2PE 1301 A 1 HETATM 3 C C3 2PE . . . B 2 9.308 71.926 59.762 1 77.15 ? C3 2PE 1301 A 1 HETATM 4 O O4 2PE . . . B 2 8.876 72.824 58.723 1 67.68 ? O4 2PE 1301 A 1 HETATM 5 C C5 2PE . . . B 2 7.872 72.044 58.082 1 71.43 ? C5 2PE 1301 A 1 HETATM 6 C C6 2PE . . . B 2 7.009 72.851 57.123 1 74.77 ? C6 2PE 1301 A 1 HETATM 7 O O7 2PE . . . B 2 6.083 71.907 56.531 1 73.2 ? O7 2PE 1301 A 1 HETATM 8 C C8 2PE . . . B 2 5.207 72.51 55.563 1 77.33 ? C8 2PE 1301 A 1 HETATM 9 C C9 2PE . . . B 2 5.973 73.486 54.649 1 72.88 ? C9 2PE 1301 A 1 HETATM 10 O O10 2PE . . . B 2 7.013 72.795 53.959 1 67.05 ? O10 2PE 1301 A 1 HETATM 11 C C11 2PE . . . B 2 6.737 72.685 52.552 1 73.64 ? C11 2PE 1301 A 1 HETATM 12 C C12 2PE . . . B 2 5.994 71.392 52.199 1 57.95 ? C12 2PE 1301 A 1 HETATM 13 O O13 2PE . . . B 2 6.787 70.28 52.597 1 59.06 ? O13 2PE 1301 A 1 HETATM 14 C C14 2PE . . . B 2 8.104 70.3 52.046 1 55.15 ? C14 2PE 1301 A 1 HETATM 15 C C15 2PE . . . B 2 8.865 69.167 52.707 1 52.17 ? C15 2PE 1301 A 1 HETATM 16 O O16 2PE . . . B 2 10.181 69.188 52.212 1 54.14 ? O16 2PE 1301 A 1 HETATM 17 C C17 2PE . . . B 2 10.744 67.878 52.293 1 48.43 ? C17 2PE 1301 A 1 HETATM 18 C C18 2PE . . . B 2 11.997 67.972 51.446 1 45.34 ? C18 2PE 1301 A 1 HETATM 19 O O19 2PE . . . B 2 11.575 68.371 50.134 1 41.23 ? O19 2PE 1301 A 1 HETATM 20 C C20 2PE . . . B 2 12.732 68.813 49.378 1 59.81 ? C20 2PE 1301 A 1 HETATM 21 C C21 2PE . . . B 2 13.331 67.669 48.519 1 62.48 ? C21 2PE 1301 A 1 HETATM 22 O O22 2PE . . . B 2 13.763 66.552 49.325 1 68.59 ? O22 2PE 1301 A 1 HETATM 23 C C23 2PE . . . B 2 13.817 65.38 48.495 1 70.9 ? C23 2PE 1301 A 1 HETATM 24 C C24 2PE . . . B 2 13.773 64.075 49.307 1 64.49 ? C24 2PE 1301 A 1 HETATM 25 O O25 2PE . . . B 2 13.824 62.99 48.355 1 71.7 ? O25 2PE 1301 A 1 HETATM 26 C C26 2PE . . . B 2 14.191 61.71 48.92 1 73.2 ? C26 2PE 1301 A 1 HETATM 27 C C27 2PE . . . B 2 12.963 60.989 49.488 1 69.62 ? C27 2PE 1301 A 1 HETATM 28 O O28 2PE . . . B 2 13.351 59.731 50.047 1 66.18 ? O28 2PE 1301 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #