data_5YR6
#
_model_server_result.job_id            4hVAQAfz1sEY5fqqeNDCKg 
_model_server_result.datetime_utc      '2024-11-30 16:49:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yr6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5YR6 
#
_exptl.entry_id    5YR6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.933 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COBALT (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.7 
_cell.angle_gamma         90 
_cell.entry_id            5YR6 
_cell.length_a            47.439 
_cell.length_b            77.325 
_cell.length_c            47.759 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YR6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASN 118 A ASN 207 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc2 A O VAL 120 A VAL 209 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc3 A OD1 ASP 140 A ASP 229 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc4 A OD2 ASP 140 A ASP 229 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc5 A OD2 ASP 151 A ASP 240 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc6 A OD1 ASP 151 A ASP 240 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc7 A NE2 HIS 214 A HIS 303 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc8 A OE1 GLU 247 A GLU 336 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc9 A O SER 274 A SER 363 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc10 A OE2 GLU 278 A GLU 367 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc11 A OE1 GLU 278 A GLU 367 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc12 B CO CO . A CO 401 1_555 F O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc13 C CO CO . A CO 402 1_555 F O HOH . A HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc14 C CO CO . A CO 402 1_555 F O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc15 D NA NA . A NA 403 1_555 F O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
#
_chem_comp.formula           'Co 2' 
_chem_comp.formula_weight    58.933 
_chem_comp.id                CO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COBALT (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YR6 
_atom_sites.fract_transf_matrix[1][1]    0.02108 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000625 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012932 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020948 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CO A 1 401 401 CO CO . 
C 2 CO A 1 402 402 CO CO . 
D 3 NA A 1 403 403 NA NA . 
E 4 TN4 A 1 410 410 TN4 TN9 . 
F 5 HOH A 1 411 411 HOH HOH . 
F 5 HOH A 2 412 412 HOH HOH . 
F 5 HOH A 3 413 413 HOH HOH . 
F 5 HOH A 4 414 414 HOH HOH . 
F 5 HOH A 5 415 415 HOH HOH . 
F 5 HOH A 6 416 416 HOH HOH . 
F 5 HOH A 7 417 417 HOH HOH . 
F 5 HOH A 8 418 418 HOH HOH . 
F 5 HOH A 9 419 419 HOH HOH . 
F 5 HOH A 10 420 420 HOH HOH . 
F 5 HOH A 11 421 421 HOH HOH . 
F 5 HOH A 12 422 422 HOH HOH . 
F 5 HOH A 13 423 423 HOH HOH . 
F 5 HOH A 14 424 424 HOH HOH . 
F 5 HOH A 15 425 425 HOH HOH . 
F 5 HOH A 16 426 426 HOH HOH . 
F 5 HOH A 17 427 427 HOH HOH . 
F 5 HOH A 18 428 428 HOH HOH . 
F 5 HOH A 19 429 429 HOH HOH . 
F 5 HOH A 20 430 430 HOH HOH . 
F 5 HOH A 21 431 431 HOH HOH . 
F 5 HOH A 22 432 432 HOH HOH . 
F 5 HOH A 23 433 433 HOH HOH . 
F 5 HOH A 24 434 434 HOH HOH . 
F 5 HOH A 25 435 435 HOH HOH . 
F 5 HOH A 26 436 436 HOH HOH . 
F 5 HOH A 27 437 437 HOH HOH . 
F 5 HOH A 28 438 438 HOH HOH . 
F 5 HOH A 29 439 439 HOH HOH . 
F 5 HOH A 30 440 440 HOH HOH . 
F 5 HOH A 31 441 441 HOH HOH . 
F 5 HOH A 32 442 442 HOH HOH . 
F 5 HOH A 33 443 443 HOH HOH . 
F 5 HOH A 34 444 444 HOH HOH . 
F 5 HOH A 35 445 445 HOH HOH . 
F 5 HOH A 36 446 446 HOH HOH . 
F 5 HOH A 37 447 447 HOH HOH . 
F 5 HOH A 38 448 448 HOH HOH . 
F 5 HOH A 39 449 449 HOH HOH . 
F 5 HOH A 40 450 450 HOH HOH . 
F 5 HOH A 41 451 451 HOH HOH . 
F 5 HOH A 42 452 452 HOH HOH . 
F 5 HOH A 43 453 453 HOH HOH . 
F 5 HOH A 44 454 454 HOH HOH . 
F 5 HOH A 45 455 455 HOH HOH . 
F 5 HOH A 46 456 456 HOH HOH . 
F 5 HOH A 47 457 457 HOH HOH . 
F 5 HOH A 48 458 458 HOH HOH . 
F 5 HOH A 49 459 459 HOH HOH . 
F 5 HOH A 50 460 460 HOH HOH . 
F 5 HOH A 51 461 461 HOH HOH . 
F 5 HOH A 52 462 462 HOH HOH . 
F 5 HOH A 53 463 463 HOH HOH . 
F 5 HOH A 54 464 464 HOH HOH . 
F 5 HOH A 55 465 465 HOH HOH . 
F 5 HOH A 56 466 466 HOH HOH . 
F 5 HOH A 57 467 467 HOH HOH . 
F 5 HOH A 58 468 468 HOH HOH . 
F 5 HOH A 59 469 469 HOH HOH . 
F 5 HOH A 60 470 470 HOH HOH . 
F 5 HOH A 61 471 471 HOH HOH . 
F 5 HOH A 62 472 472 HOH HOH . 
F 5 HOH A 63 473 473 HOH HOH . 
F 5 HOH A 64 474 474 HOH HOH . 
F 5 HOH A 65 475 475 HOH HOH . 
F 5 HOH A 66 476 476 HOH HOH . 
F 5 HOH A 67 477 477 HOH HOH . 
F 5 HOH A 68 478 478 HOH HOH . 
F 5 HOH A 69 479 479 HOH HOH . 
F 5 HOH A 70 480 480 HOH HOH . 
F 5 HOH A 71 481 481 HOH HOH . 
F 5 HOH A 72 482 482 HOH HOH . 
F 5 HOH A 73 483 483 HOH HOH . 
F 5 HOH A 74 484 484 HOH HOH . 
F 5 HOH A 75 485 485 HOH HOH . 
F 5 HOH A 76 486 486 HOH HOH . 
F 5 HOH A 77 487 487 HOH HOH . 
F 5 HOH A 78 488 488 HOH HOH . 
F 5 HOH A 79 489 489 HOH HOH . 
F 5 HOH A 80 490 490 HOH HOH . 
F 5 HOH A 81 491 491 HOH HOH . 
F 5 HOH A 82 492 492 HOH HOH . 
F 5 HOH A 83 493 493 HOH HOH . 
F 5 HOH A 84 494 494 HOH HOH . 
F 5 HOH A 85 495 495 HOH HOH . 
F 5 HOH A 86 496 496 HOH HOH . 
F 5 HOH A 87 497 497 HOH HOH . 
F 5 HOH A 88 498 498 HOH HOH . 
F 5 HOH A 89 499 499 HOH HOH . 
F 5 HOH A 90 500 500 HOH HOH . 
F 5 HOH A 91 501 501 HOH HOH . 
F 5 HOH A 92 502 502 HOH HOH . 
F 5 HOH A 93 503 503 HOH HOH . 
F 5 HOH A 94 504 504 HOH HOH . 
F 5 HOH A 95 505 505 HOH HOH . 
F 5 HOH A 96 506 506 HOH HOH . 
F 5 HOH A 97 507 507 HOH HOH . 
F 5 HOH A 98 508 508 HOH HOH . 
F 5 HOH A 99 509 509 HOH HOH . 
F 5 HOH A 100 510 510 HOH HOH . 
F 5 HOH A 101 511 511 HOH HOH . 
F 5 HOH A 102 512 512 HOH HOH . 
F 5 HOH A 103 513 513 HOH HOH . 
F 5 HOH A 104 514 514 HOH HOH . 
F 5 HOH A 105 515 515 HOH HOH . 
F 5 HOH A 106 516 516 HOH HOH . 
F 5 HOH A 107 517 517 HOH HOH . 
F 5 HOH A 108 518 518 HOH HOH . 
F 5 HOH A 109 519 519 HOH HOH . 
F 5 HOH A 110 520 520 HOH HOH . 
F 5 HOH A 111 521 521 HOH HOH . 
F 5 HOH A 112 522 522 HOH HOH . 
F 5 HOH A 113 523 523 HOH HOH . 
F 5 HOH A 114 524 524 HOH HOH . 
F 5 HOH A 115 525 525 HOH HOH . 
F 5 HOH A 116 526 526 HOH HOH . 
F 5 HOH A 117 527 527 HOH HOH . 
F 5 HOH A 118 528 528 HOH HOH . 
F 5 HOH A 119 529 529 HOH HOH . 
F 5 HOH A 120 530 530 HOH HOH . 
F 5 HOH A 121 531 531 HOH HOH . 
F 5 HOH A 122 532 532 HOH HOH . 
F 5 HOH A 123 533 533 HOH HOH . 
F 5 HOH A 124 534 534 HOH HOH . 
F 5 HOH A 125 535 535 HOH HOH . 
F 5 HOH A 126 536 536 HOH HOH . 
F 5 HOH A 127 537 537 HOH HOH . 
F 5 HOH A 128 538 538 HOH HOH . 
F 5 HOH A 129 539 539 HOH HOH . 
F 5 HOH A 130 540 540 HOH HOH . 
F 5 HOH A 131 541 541 HOH HOH . 
F 5 HOH A 132 542 542 HOH HOH . 
F 5 HOH A 133 543 543 HOH HOH . 
F 5 HOH A 134 544 544 HOH HOH . 
F 5 HOH A 135 545 545 HOH HOH . 
F 5 HOH A 136 546 546 HOH HOH . 
F 5 HOH A 137 547 547 HOH HOH . 
F 5 HOH A 138 548 548 HOH HOH . 
F 5 HOH A 139 549 549 HOH HOH . 
F 5 HOH A 140 550 550 HOH HOH . 
F 5 HOH A 141 551 551 HOH HOH . 
F 5 HOH A 142 552 552 HOH HOH . 
F 5 HOH A 143 553 553 HOH HOH . 
F 5 HOH A 144 554 554 HOH HOH . 
F 5 HOH A 145 555 555 HOH HOH . 
F 5 HOH A 146 556 556 HOH HOH . 
F 5 HOH A 147 557 557 HOH HOH . 
F 5 HOH A 148 558 558 HOH HOH . 
F 5 HOH A 149 559 559 HOH HOH . 
F 5 HOH A 150 560 560 HOH HOH . 
F 5 HOH A 151 561 561 HOH HOH . 
F 5 HOH A 152 562 562 HOH HOH . 
F 5 HOH A 153 563 563 HOH HOH . 
F 5 HOH A 154 564 564 HOH HOH . 
F 5 HOH A 155 565 565 HOH HOH . 
F 5 HOH A 156 566 566 HOH HOH . 
F 5 HOH A 157 567 567 HOH HOH . 
F 5 HOH A 158 568 568 HOH HOH . 
F 5 HOH A 159 569 569 HOH HOH . 
F 5 HOH A 160 570 570 HOH HOH . 
F 5 HOH A 161 571 571 HOH HOH . 
F 5 HOH A 162 572 572 HOH HOH . 
F 5 HOH A 163 573 573 HOH HOH . 
F 5 HOH A 164 574 574 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CO 
_atom_site.label_atom_id         CO 
_atom_site.label_comp_id         CO 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               22.208 
_atom_site.Cartn_y               0.601 
_atom_site.Cartn_z               11.721 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.71 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CO 
_atom_site.auth_comp_id          CO 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#