data_5YRB
#
_model_server_result.job_id            a2o3lpDwfBvLBZgRlpQA-w 
_model_server_result.datetime_utc      '2024-11-13 06:30:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yrb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5YRB 
#
_exptl.entry_id    5YRB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YRB 
_cell.length_a            103.73 
_cell.length_b            103.73 
_cell.length_c            103.73 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YRB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K 1 1 
A,B,C,D,E,F,G,H,I,J,K 1 2 
A,B,C,D,E,F,G,H,I,J,K 1 3 
A,B,C,D,E,F,G,H,I,J,K 1 4 
A,B,C,D,E,F,G,H,I,J,K 1 5 
A,B,C,D,E,F,G,H,I,J,K 1 6 
A,B,C,D,E,F,G,H,I,J,K 1 7 
A,B,C,D,E,F,G,H,I,J,K 1 8 
A,B,C,D,E,F,G,H,I,J,K 1 9 
A,B,C,D,E,F,G,H,I,J,K 1 10 
A,B,C,D,E,F,G,H,I,J,K 1 11 
A,B,C,D,E,F,G,H,I,J,K 1 12 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 
7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 
8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 
9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 
11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 
12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 73 A CYS 73 1_555 A SG CYS 83 A CYS 83 9_555 ? ? ? ? B ? ? ? ? ? ? ? 2.295 ? 
disulf ? disulf2 A SG CYS 193 A CYS 193 1_555 A SG CYS 194 A CYS 194 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
_atom_sites.entry_id                     5YRB 
_atom_sites.fract_transf_matrix[1][1]    0.00964 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00964 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00964 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 301 2 EDO EDO . 
C 2 EDO A 1 302 4 EDO EDO . 
D 2 EDO A 1 303 5 EDO EDO . 
E 2 EDO A 1 304 8 EDO EDO . 
F 2 EDO A 1 305 9 EDO EDO . 
G 2 EDO A 1 306 12 EDO EDO . 
H 2 EDO A 1 307 13 EDO EDO . 
I 2 EDO A 1 308 15 EDO EDO . 
J 2 EDO A 1 309 16 EDO EDO . 
K 3 HOH A 1 401 120 HOH HOH . 
K 3 HOH A 2 402 74 HOH HOH . 
K 3 HOH A 3 403 127 HOH HOH . 
K 3 HOH A 4 404 22 HOH HOH . 
K 3 HOH A 5 405 72 HOH HOH . 
K 3 HOH A 6 406 17 HOH HOH . 
K 3 HOH A 7 407 129 HOH HOH . 
K 3 HOH A 8 408 55 HOH HOH . 
K 3 HOH A 9 409 64 HOH HOH . 
K 3 HOH A 10 410 7 HOH HOH . 
K 3 HOH A 11 411 50 HOH HOH . 
K 3 HOH A 12 412 81 HOH HOH . 
K 3 HOH A 13 413 61 HOH HOH . 
K 3 HOH A 14 414 11 HOH HOH . 
K 3 HOH A 15 415 48 HOH HOH . 
K 3 HOH A 16 416 77 HOH HOH . 
K 3 HOH A 17 417 118 HOH HOH . 
K 3 HOH A 18 418 53 HOH HOH . 
K 3 HOH A 19 419 10 HOH HOH . 
K 3 HOH A 20 420 5 HOH HOH . 
K 3 HOH A 21 421 63 HOH HOH . 
K 3 HOH A 22 422 36 HOH HOH . 
K 3 HOH A 23 423 8 HOH HOH . 
K 3 HOH A 24 424 78 HOH HOH . 
K 3 HOH A 25 425 33 HOH HOH . 
K 3 HOH A 26 426 12 HOH HOH . 
K 3 HOH A 27 427 20 HOH HOH . 
K 3 HOH A 28 428 82 HOH HOH . 
K 3 HOH A 29 429 18 HOH HOH . 
K 3 HOH A 30 430 42 HOH HOH . 
K 3 HOH A 31 431 13 HOH HOH . 
K 3 HOH A 32 432 51 HOH HOH . 
K 3 HOH A 33 433 25 HOH HOH . 
K 3 HOH A 34 434 47 HOH HOH . 
K 3 HOH A 35 435 9 HOH HOH . 
K 3 HOH A 36 436 4 HOH HOH . 
K 3 HOH A 37 437 112 HOH HOH . 
K 3 HOH A 38 438 31 HOH HOH . 
K 3 HOH A 39 439 23 HOH HOH . 
K 3 HOH A 40 440 37 HOH HOH . 
K 3 HOH A 41 441 75 HOH HOH . 
K 3 HOH A 42 442 56 HOH HOH . 
K 3 HOH A 43 443 38 HOH HOH . 
K 3 HOH A 44 444 21 HOH HOH . 
K 3 HOH A 45 445 89 HOH HOH . 
K 3 HOH A 46 446 30 HOH HOH . 
K 3 HOH A 47 447 49 HOH HOH . 
K 3 HOH A 48 448 24 HOH HOH . 
K 3 HOH A 49 449 130 HOH HOH . 
K 3 HOH A 50 450 67 HOH HOH . 
K 3 HOH A 51 451 2 HOH HOH . 
K 3 HOH A 52 452 43 HOH HOH . 
K 3 HOH A 53 453 73 HOH HOH . 
K 3 HOH A 54 454 41 HOH HOH . 
K 3 HOH A 55 455 70 HOH HOH . 
K 3 HOH A 56 456 59 HOH HOH . 
K 3 HOH A 57 457 34 HOH HOH . 
K 3 HOH A 58 458 1 HOH HOH . 
K 3 HOH A 59 459 40 HOH HOH . 
K 3 HOH A 60 460 85 HOH HOH . 
K 3 HOH A 61 461 29 HOH HOH . 
K 3 HOH A 62 462 90 HOH HOH . 
K 3 HOH A 63 463 60 HOH HOH . 
K 3 HOH A 64 464 99 HOH HOH . 
K 3 HOH A 65 465 79 HOH HOH . 
K 3 HOH A 66 466 83 HOH HOH . 
K 3 HOH A 67 467 71 HOH HOH . 
K 3 HOH A 68 468 3 HOH HOH . 
K 3 HOH A 69 469 44 HOH HOH . 
K 3 HOH A 70 470 80 HOH HOH . 
K 3 HOH A 71 471 65 HOH HOH . 
K 3 HOH A 72 472 26 HOH HOH . 
K 3 HOH A 73 473 66 HOH HOH . 
K 3 HOH A 74 474 84 HOH HOH . 
K 3 HOH A 75 475 45 HOH HOH . 
K 3 HOH A 76 476 52 HOH HOH . 
K 3 HOH A 77 477 14 HOH HOH . 
K 3 HOH A 78 478 27 HOH HOH . 
K 3 HOH A 79 479 54 HOH HOH . 
K 3 HOH A 80 480 16 HOH HOH . 
K 3 HOH A 81 481 6 HOH HOH . 
K 3 HOH A 82 482 35 HOH HOH . 
K 3 HOH A 83 483 91 HOH HOH . 
K 3 HOH A 84 484 15 HOH HOH . 
K 3 HOH A 85 485 19 HOH HOH . 
K 3 HOH A 86 486 68 HOH HOH . 
K 3 HOH A 87 487 76 HOH HOH . 
K 3 HOH A 88 488 32 HOH HOH . 
K 3 HOH A 89 489 62 HOH HOH . 
K 3 HOH A 90 490 69 HOH HOH . 
K 3 HOH A 91 491 121 HOH HOH . 
K 3 HOH A 92 492 58 HOH HOH . 
K 3 HOH A 93 493 57 HOH HOH . 
K 3 HOH A 94 494 39 HOH HOH . 
K 3 HOH A 95 495 92 HOH HOH . 
K 3 HOH A 96 496 87 HOH HOH . 
K 3 HOH A 97 497 128 HOH HOH . 
K 3 HOH A 98 498 103 HOH HOH . 
K 3 HOH A 99 499 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . B 2 -21.195 -10.346 -39.068 1 38.1 ? C1 EDO 301 A 1 
HETATM 2 O O1 EDO . . . B 2 -22.312 -10.341 -38.17 1 32.02 ? O1 EDO 301 A 1 
HETATM 3 C C2 EDO . . . B 2 -20.611 -11.753 -39.066 1 29.84 ? C2 EDO 301 A 1 
HETATM 4 O O2 EDO . . . B 2 -19.442 -11.925 -39.829 1 37.89 ? O2 EDO 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           4 
#