data_5YS3
#
_model_server_result.job_id            hbv2-j5Ljs0kZEhPkEGHEw 
_model_server_result.datetime_utc      '2024-12-26 14:55:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ys3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":208}' 
#
_entry.id    5YS3 
#
_exptl.entry_id    5YS3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              256.424 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALMITIC ACID' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YS3 
_cell.length_a            79.456 
_cell.length_b            79.456 
_cell.length_c            89.099 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YS3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        77 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 42' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 79.456 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 JA N N 
? 3 KA N N 
#
_chem_comp.formula           'C16 H32 O2' 
_chem_comp.formula_weight    256.424 
_chem_comp.id                PLM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PALMITIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PLM sing 321 n n 
C1 O2 PLM doub 322 n n 
C1 C2 PLM sing 323 n n 
O1 H PLM sing 324 n n 
C2 C3 PLM sing 325 n n 
C2 H21 PLM sing 326 n n 
C2 H22 PLM sing 327 n n 
C3 C4 PLM sing 328 n n 
C3 H31 PLM sing 329 n n 
C3 H32 PLM sing 330 n n 
C4 C5 PLM sing 331 n n 
C4 H41 PLM sing 332 n n 
C4 H42 PLM sing 333 n n 
C5 C6 PLM sing 334 n n 
C5 H51 PLM sing 335 n n 
C5 H52 PLM sing 336 n n 
C6 C7 PLM sing 337 n n 
C6 H61 PLM sing 338 n n 
C6 H62 PLM sing 339 n n 
C7 C8 PLM sing 340 n n 
C7 H71 PLM sing 341 n n 
C7 H72 PLM sing 342 n n 
C8 C9 PLM sing 343 n n 
C8 H81 PLM sing 344 n n 
C8 H82 PLM sing 345 n n 
C9 CA PLM sing 346 n n 
C9 H91 PLM sing 347 n n 
C9 H92 PLM sing 348 n n 
CA CB PLM sing 349 n n 
CA HA1 PLM sing 350 n n 
CA HA2 PLM sing 351 n n 
CB CC PLM sing 352 n n 
CB HB1 PLM sing 353 n n 
CB HB2 PLM sing 354 n n 
CC CD PLM sing 355 n n 
CC HC1 PLM sing 356 n n 
CC HC2 PLM sing 357 n n 
CD CE PLM sing 358 n n 
CD HD1 PLM sing 359 n n 
CD HD2 PLM sing 360 n n 
CE CF PLM sing 361 n n 
CE HE1 PLM sing 362 n n 
CE HE2 PLM sing 363 n n 
CF CG PLM sing 364 n n 
CF HF1 PLM sing 365 n n 
CF HF2 PLM sing 366 n n 
CG HG1 PLM sing 367 n n 
CG HG2 PLM sing 368 n n 
CG HG3 PLM sing 369 n n 
#
_atom_sites.entry_id                     5YS3 
_atom_sites.fract_transf_matrix[1][1]    0.012586 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012586 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011223 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ACT A 1 201 1 ACT ACT . 
E 2 ACT A 1 202 2 ACT ACT . 
F 2 ACT A 1 203 3 ACT ACT . 
G 2 ACT A 1 204 4 ACT ACT . 
H 2 ACT A 1 205 13 ACT ACT . 
I 2 ACT A 1 206 16 ACT ACT . 
J 3 PLM A 1 207 2 PLM FAT . 
K 3 PLM A 1 208 6 PLM FAT . 
L 3 PLM A 1 209 8 PLM FAT . 
M 3 PLM A 1 210 1 PLM FAT . 
N 4 78M A 1 211 1 78M 78M . 
O 4 78M A 1 212 5 78M 78M . 
P 2 ACT B 1 201 5 ACT ACT . 
Q 2 ACT B 1 202 6 ACT ACT . 
R 2 ACT B 1 203 7 ACT ACT . 
S 2 ACT B 1 204 8 ACT ACT . 
T 2 ACT B 1 205 14 ACT ACT . 
U 2 ACT B 1 206 18 ACT ACT . 
V 3 PLM B 1 207 4 PLM FAT . 
W 3 PLM B 1 208 5 PLM FAT . 
X 3 PLM B 1 209 7 PLM FAT . 
Y 3 PLM B 1 210 3 PLM FAT . 
Z 4 78M B 1 211 2 78M 78M . 
AA 4 78M B 1 212 3 78M 78M . 
BA 4 78M B 1 213 6 78M 78M . 
CA 4 78M B 1 214 7 78M 78M . 
DA 2 ACT C 1 201 9 ACT ACT . 
EA 2 ACT C 1 202 10 ACT ACT . 
FA 2 ACT C 1 203 11 ACT ACT . 
GA 2 ACT C 1 204 12 ACT ACT . 
HA 2 ACT C 1 205 15 ACT ACT . 
IA 2 ACT C 1 206 17 ACT ACT . 
JA 3 PLM C 1 207 9 PLM FAT . 
KA 3 PLM C 1 208 10 PLM FAT . 
LA 4 78M C 1 209 4 78M 78M . 
MA 5 HOH A 1 301 44 HOH HOH . 
MA 5 HOH A 2 302 62 HOH HOH . 
MA 5 HOH A 3 303 45 HOH HOH . 
MA 5 HOH A 4 304 17 HOH HOH . 
MA 5 HOH A 5 305 49 HOH HOH . 
MA 5 HOH A 6 306 34 HOH HOH . 
MA 5 HOH A 7 307 56 HOH HOH . 
MA 5 HOH A 8 308 28 HOH HOH . 
MA 5 HOH A 9 309 20 HOH HOH . 
MA 5 HOH A 10 310 102 HOH HOH . 
MA 5 HOH A 11 311 11 HOH HOH . 
MA 5 HOH A 12 312 91 HOH HOH . 
MA 5 HOH A 13 313 72 HOH HOH . 
MA 5 HOH A 14 314 9 HOH HOH . 
MA 5 HOH A 15 315 14 HOH HOH . 
MA 5 HOH A 16 316 27 HOH HOH . 
MA 5 HOH A 17 317 76 HOH HOH . 
MA 5 HOH A 18 318 1 HOH HOH . 
MA 5 HOH A 19 319 30 HOH HOH . 
MA 5 HOH A 20 320 67 HOH HOH . 
MA 5 HOH A 21 321 5 HOH HOH . 
MA 5 HOH A 22 322 50 HOH HOH . 
MA 5 HOH A 23 323 112 HOH HOH . 
MA 5 HOH A 24 324 40 HOH HOH . 
MA 5 HOH A 25 325 41 HOH HOH . 
MA 5 HOH A 26 326 31 HOH HOH . 
MA 5 HOH A 27 327 39 HOH HOH . 
MA 5 HOH A 28 328 63 HOH HOH . 
MA 5 HOH A 29 329 186 HOH HOH . 
MA 5 HOH A 30 330 144 HOH HOH . 
MA 5 HOH A 31 331 46 HOH HOH . 
MA 5 HOH A 32 332 64 HOH HOH . 
MA 5 HOH A 33 333 123 HOH HOH . 
MA 5 HOH A 34 334 99 HOH HOH . 
MA 5 HOH A 35 335 96 HOH HOH . 
MA 5 HOH A 36 336 122 HOH HOH . 
MA 5 HOH A 37 337 81 HOH HOH . 
MA 5 HOH A 38 338 131 HOH HOH . 
MA 5 HOH A 39 339 162 HOH HOH . 
MA 5 HOH A 40 340 93 HOH HOH . 
MA 5 HOH A 41 341 42 HOH HOH . 
MA 5 HOH A 42 342 90 HOH HOH . 
MA 5 HOH A 43 343 97 HOH HOH . 
MA 5 HOH A 44 344 207 HOH HOH . 
MA 5 HOH A 45 345 157 HOH HOH . 
MA 5 HOH A 46 346 159 HOH HOH . 
MA 5 HOH A 47 347 83 HOH HOH . 
MA 5 HOH A 48 348 88 HOH HOH . 
MA 5 HOH A 49 349 147 HOH HOH . 
MA 5 HOH A 50 350 85 HOH HOH . 
MA 5 HOH A 51 351 203 HOH HOH . 
MA 5 HOH A 52 352 194 HOH HOH . 
MA 5 HOH A 53 353 183 HOH HOH . 
MA 5 HOH A 54 354 184 HOH HOH . 
MA 5 HOH A 55 355 125 HOH HOH . 
MA 5 HOH A 56 356 86 HOH HOH . 
MA 5 HOH A 57 357 133 HOH HOH . 
MA 5 HOH A 58 358 138 HOH HOH . 
NA 5 HOH B 1 301 152 HOH HOH . 
NA 5 HOH B 2 302 52 HOH HOH . 
NA 5 HOH B 3 303 135 HOH HOH . 
NA 5 HOH B 4 304 79 HOH HOH . 
NA 5 HOH B 5 305 148 HOH HOH . 
NA 5 HOH B 6 306 22 HOH HOH . 
NA 5 HOH B 7 307 154 HOH HOH . 
NA 5 HOH B 8 308 53 HOH HOH . 
NA 5 HOH B 9 309 206 HOH HOH . 
NA 5 HOH B 10 310 25 HOH HOH . 
NA 5 HOH B 11 311 32 HOH HOH . 
NA 5 HOH B 12 312 59 HOH HOH . 
NA 5 HOH B 13 313 8 HOH HOH . 
NA 5 HOH B 14 314 70 HOH HOH . 
NA 5 HOH B 15 315 7 HOH HOH . 
NA 5 HOH B 16 316 4 HOH HOH . 
NA 5 HOH B 17 317 130 HOH HOH . 
NA 5 HOH B 18 318 114 HOH HOH . 
NA 5 HOH B 19 319 12 HOH HOH . 
NA 5 HOH B 20 320 2 HOH HOH . 
NA 5 HOH B 21 321 43 HOH HOH . 
NA 5 HOH B 22 322 57 HOH HOH . 
NA 5 HOH B 23 323 137 HOH HOH . 
NA 5 HOH B 24 324 35 HOH HOH . 
NA 5 HOH B 25 325 84 HOH HOH . 
NA 5 HOH B 26 326 6 HOH HOH . 
NA 5 HOH B 27 327 150 HOH HOH . 
NA 5 HOH B 28 328 129 HOH HOH . 
NA 5 HOH B 29 329 149 HOH HOH . 
NA 5 HOH B 30 330 89 HOH HOH . 
NA 5 HOH B 31 331 37 HOH HOH . 
NA 5 HOH B 32 332 161 HOH HOH . 
NA 5 HOH B 33 333 61 HOH HOH . 
NA 5 HOH B 34 334 71 HOH HOH . 
NA 5 HOH B 35 335 168 HOH HOH . 
NA 5 HOH B 36 336 15 HOH HOH . 
NA 5 HOH B 37 337 143 HOH HOH . 
NA 5 HOH B 38 338 187 HOH HOH . 
NA 5 HOH B 39 339 100 HOH HOH . 
NA 5 HOH B 40 340 196 HOH HOH . 
NA 5 HOH B 41 341 74 HOH HOH . 
NA 5 HOH B 42 342 126 HOH HOH . 
NA 5 HOH B 43 343 132 HOH HOH . 
NA 5 HOH B 44 344 103 HOH HOH . 
NA 5 HOH B 45 345 108 HOH HOH . 
NA 5 HOH B 46 346 146 HOH HOH . 
NA 5 HOH B 47 347 106 HOH HOH . 
NA 5 HOH B 48 348 80 HOH HOH . 
NA 5 HOH B 49 349 200 HOH HOH . 
NA 5 HOH B 50 350 195 HOH HOH . 
NA 5 HOH B 51 351 68 HOH HOH . 
NA 5 HOH B 52 352 124 HOH HOH . 
NA 5 HOH B 53 353 134 HOH HOH . 
OA 5 HOH C 1 301 127 HOH HOH . 
OA 5 HOH C 2 302 191 HOH HOH . 
OA 5 HOH C 3 303 77 HOH HOH . 
OA 5 HOH C 4 304 201 HOH HOH . 
OA 5 HOH C 5 305 82 HOH HOH . 
OA 5 HOH C 6 306 18 HOH HOH . 
OA 5 HOH C 7 307 66 HOH HOH . 
OA 5 HOH C 8 308 69 HOH HOH . 
OA 5 HOH C 9 309 26 HOH HOH . 
OA 5 HOH C 10 310 19 HOH HOH . 
OA 5 HOH C 11 311 151 HOH HOH . 
OA 5 HOH C 12 312 21 HOH HOH . 
OA 5 HOH C 13 313 48 HOH HOH . 
OA 5 HOH C 14 314 145 HOH HOH . 
OA 5 HOH C 15 315 47 HOH HOH . 
OA 5 HOH C 16 316 29 HOH HOH . 
OA 5 HOH C 17 317 13 HOH HOH . 
OA 5 HOH C 18 318 16 HOH HOH . 
OA 5 HOH C 19 319 38 HOH HOH . 
OA 5 HOH C 20 320 136 HOH HOH . 
OA 5 HOH C 21 321 73 HOH HOH . 
OA 5 HOH C 22 322 3 HOH HOH . 
OA 5 HOH C 23 323 58 HOH HOH . 
OA 5 HOH C 24 324 36 HOH HOH . 
OA 5 HOH C 25 325 10 HOH HOH . 
OA 5 HOH C 26 326 107 HOH HOH . 
OA 5 HOH C 27 327 180 HOH HOH . 
OA 5 HOH C 28 328 92 HOH HOH . 
OA 5 HOH C 29 329 110 HOH HOH . 
OA 5 HOH C 30 330 95 HOH HOH . 
OA 5 HOH C 31 331 23 HOH HOH . 
OA 5 HOH C 32 332 109 HOH HOH . 
OA 5 HOH C 33 333 118 HOH HOH . 
OA 5 HOH C 34 334 117 HOH HOH . 
OA 5 HOH C 35 335 179 HOH HOH . 
OA 5 HOH C 36 336 78 HOH HOH . 
OA 5 HOH C 37 337 139 HOH HOH . 
OA 5 HOH C 38 338 104 HOH HOH . 
OA 5 HOH C 39 339 121 HOH HOH . 
OA 5 HOH C 40 340 60 HOH HOH . 
OA 5 HOH C 41 341 142 HOH HOH . 
OA 5 HOH C 42 342 119 HOH HOH . 
OA 5 HOH C 43 343 208 HOH HOH . 
OA 5 HOH C 44 344 190 HOH HOH . 
OA 5 HOH C 45 345 98 HOH HOH . 
OA 5 HOH C 46 346 197 HOH HOH . 
OA 5 HOH C 47 347 202 HOH HOH . 
OA 5 HOH C 48 348 65 HOH HOH . 
OA 5 HOH C 49 349 113 HOH HOH . 
OA 5 HOH C 50 350 105 HOH HOH . 
OA 5 HOH C 51 351 189 HOH HOH . 
OA 5 HOH C 52 352 188 HOH HOH . 
OA 5 HOH C 53 353 198 HOH HOH . 
OA 5 HOH C 54 354 205 HOH HOH . 
OA 5 HOH C 55 355 199 HOH HOH . 
OA 5 HOH C 56 356 94 HOH HOH . 
OA 5 HOH C 57 357 140 HOH HOH . 
OA 5 HOH C 58 358 181 HOH HOH . 
OA 5 HOH C 59 359 101 HOH HOH . 
OA 5 HOH C 60 360 204 HOH HOH . 
OA 5 HOH C 61 361 54 HOH HOH . 
OA 5 HOH C 62 362 141 HOH HOH . 
OA 5 HOH C 63 363 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLM . . . KA 3 26.319 31.57 34.879 1 29.34 ? C1 PLM 208 C 1 
HETATM 2 C C2 PLM . . . KA 3 25.527 30.932 33.734 1 34.37 ? C2 PLM 208 C 1 
HETATM 3 C C3 PLM . . . KA 3 25.937 31.492 32.373 1 33.06 ? C3 PLM 208 C 1 
HETATM 4 C C4 PLM . . . KA 3 24.877 31.315 31.286 1 37.11 ? C4 PLM 208 C 1 
HETATM 5 C C5 PLM . . . KA 3 25.133 32.278 30.119 1 40.86 ? C5 PLM 208 C 1 
HETATM 6 C C6 PLM . . . KA 3 24.427 31.896 28.815 1 42.67 ? C6 PLM 208 C 1 
HETATM 7 C C7 PLM . . . KA 3 24.486 33.018 27.772 1 39.32 ? C7 PLM 208 C 1 
HETATM 8 C C8 PLM . . . KA 3 23.104 33.402 27.23 1 43.43 ? C8 PLM 208 C 1 
HETATM 9 C C9 PLM . . . KA 3 23.082 33.464 25.701 1 42.32 ? C9 PLM 208 C 1 
HETATM 10 C CA PLM . . . KA 3 22.335 34.666 25.113 1 44.51 ? CA PLM 208 C 1 
HETATM 11 C CB PLM . . . KA 3 22.509 34.706 23.592 1 44.25 ? CB PLM 208 C 1 
HETATM 12 C CC PLM . . . KA 3 22.009 35.983 22.92 1 43.93 ? CC PLM 208 C 1 
HETATM 13 C CD PLM . . . KA 3 22.339 35.986 21.427 1 48.03 ? CD PLM 208 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           13 
#