data_5YS3
#
_model_server_result.job_id            Qri2ltnHH2hBevordpa4SA 
_model_server_result.datetime_utc      '2024-12-26 14:55:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ys3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":212}' 
#
_entry.id    5YS3 
#
_exptl.entry_id    5YS3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YS3 
_cell.length_a            79.456 
_cell.length_b            79.456 
_cell.length_c            89.099 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YS3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        77 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 42' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 79.456 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 O N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
? 4 LA N N 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C20 78M sing 1 n n 
C20 C18 78M sing 2 n n 
C18 O19 78M sing 3 n n 
C18 C17 78M sing 4 n n 
C17 O2 78M sing 5 n n 
O2 C1 78M sing 6 n n 
C1 O1 78M doub 7 n n 
C1 C2 78M sing 8 n n 
C2 C3 78M sing 9 n n 
C3 C4 78M sing 10 n n 
C4 C5 78M sing 11 n n 
C5 C6 78M sing 12 n n 
C6 C7 78M sing 13 n n 
C7 C8 78M doub 14 z n 
C8 C9 78M sing 15 n n 
C9 C10 78M sing 16 n n 
C10 C11 78M sing 17 n n 
C11 C12 78M sing 18 n n 
C12 C13 78M sing 19 n n 
C15 C14 78M sing 20 n n 
C13 C14 78M sing 21 n n 
O21 H21 78M sing 22 n n 
C20 H201 78M sing 23 n n 
C20 H202 78M sing 24 n n 
C18 H18 78M sing 25 n n 
O19 H19 78M sing 26 n n 
C17 H171 78M sing 27 n n 
C17 H172 78M sing 28 n n 
C2 H21C 78M sing 29 n n 
C2 H22C 78M sing 30 n n 
C3 H31C 78M sing 31 n n 
C3 H32C 78M sing 32 n n 
C4 H41C 78M sing 33 n n 
C4 H42C 78M sing 34 n n 
C5 H51C 78M sing 35 n n 
C5 H52C 78M sing 36 n n 
C6 H61C 78M sing 37 n n 
C6 H62C 78M sing 38 n n 
C7 H7 78M sing 39 n n 
C8 H8 78M sing 40 n n 
C9 H91C 78M sing 41 n n 
C9 H92C 78M sing 42 n n 
C10 H101 78M sing 43 n n 
C10 H102 78M sing 44 n n 
C11 H111 78M sing 45 n n 
C11 H112 78M sing 46 n n 
C12 H121 78M sing 47 n n 
C12 H122 78M sing 48 n n 
C13 H131 78M sing 49 n n 
C13 H132 78M sing 50 n n 
C15 H151 78M sing 51 n n 
C15 H152 78M sing 52 n n 
C15 H153 78M sing 53 n n 
C14 H141 78M sing 54 n n 
C14 H142 78M sing 55 n n 
#
_atom_sites.entry_id                     5YS3 
_atom_sites.fract_transf_matrix[1][1]    0.012586 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012586 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011223 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ACT A 1 201 1 ACT ACT . 
E 2 ACT A 1 202 2 ACT ACT . 
F 2 ACT A 1 203 3 ACT ACT . 
G 2 ACT A 1 204 4 ACT ACT . 
H 2 ACT A 1 205 13 ACT ACT . 
I 2 ACT A 1 206 16 ACT ACT . 
J 3 PLM A 1 207 2 PLM FAT . 
K 3 PLM A 1 208 6 PLM FAT . 
L 3 PLM A 1 209 8 PLM FAT . 
M 3 PLM A 1 210 1 PLM FAT . 
N 4 78M A 1 211 1 78M 78M . 
O 4 78M A 1 212 5 78M 78M . 
P 2 ACT B 1 201 5 ACT ACT . 
Q 2 ACT B 1 202 6 ACT ACT . 
R 2 ACT B 1 203 7 ACT ACT . 
S 2 ACT B 1 204 8 ACT ACT . 
T 2 ACT B 1 205 14 ACT ACT . 
U 2 ACT B 1 206 18 ACT ACT . 
V 3 PLM B 1 207 4 PLM FAT . 
W 3 PLM B 1 208 5 PLM FAT . 
X 3 PLM B 1 209 7 PLM FAT . 
Y 3 PLM B 1 210 3 PLM FAT . 
Z 4 78M B 1 211 2 78M 78M . 
AA 4 78M B 1 212 3 78M 78M . 
BA 4 78M B 1 213 6 78M 78M . 
CA 4 78M B 1 214 7 78M 78M . 
DA 2 ACT C 1 201 9 ACT ACT . 
EA 2 ACT C 1 202 10 ACT ACT . 
FA 2 ACT C 1 203 11 ACT ACT . 
GA 2 ACT C 1 204 12 ACT ACT . 
HA 2 ACT C 1 205 15 ACT ACT . 
IA 2 ACT C 1 206 17 ACT ACT . 
JA 3 PLM C 1 207 9 PLM FAT . 
KA 3 PLM C 1 208 10 PLM FAT . 
LA 4 78M C 1 209 4 78M 78M . 
MA 5 HOH A 1 301 44 HOH HOH . 
MA 5 HOH A 2 302 62 HOH HOH . 
MA 5 HOH A 3 303 45 HOH HOH . 
MA 5 HOH A 4 304 17 HOH HOH . 
MA 5 HOH A 5 305 49 HOH HOH . 
MA 5 HOH A 6 306 34 HOH HOH . 
MA 5 HOH A 7 307 56 HOH HOH . 
MA 5 HOH A 8 308 28 HOH HOH . 
MA 5 HOH A 9 309 20 HOH HOH . 
MA 5 HOH A 10 310 102 HOH HOH . 
MA 5 HOH A 11 311 11 HOH HOH . 
MA 5 HOH A 12 312 91 HOH HOH . 
MA 5 HOH A 13 313 72 HOH HOH . 
MA 5 HOH A 14 314 9 HOH HOH . 
MA 5 HOH A 15 315 14 HOH HOH . 
MA 5 HOH A 16 316 27 HOH HOH . 
MA 5 HOH A 17 317 76 HOH HOH . 
MA 5 HOH A 18 318 1 HOH HOH . 
MA 5 HOH A 19 319 30 HOH HOH . 
MA 5 HOH A 20 320 67 HOH HOH . 
MA 5 HOH A 21 321 5 HOH HOH . 
MA 5 HOH A 22 322 50 HOH HOH . 
MA 5 HOH A 23 323 112 HOH HOH . 
MA 5 HOH A 24 324 40 HOH HOH . 
MA 5 HOH A 25 325 41 HOH HOH . 
MA 5 HOH A 26 326 31 HOH HOH . 
MA 5 HOH A 27 327 39 HOH HOH . 
MA 5 HOH A 28 328 63 HOH HOH . 
MA 5 HOH A 29 329 186 HOH HOH . 
MA 5 HOH A 30 330 144 HOH HOH . 
MA 5 HOH A 31 331 46 HOH HOH . 
MA 5 HOH A 32 332 64 HOH HOH . 
MA 5 HOH A 33 333 123 HOH HOH . 
MA 5 HOH A 34 334 99 HOH HOH . 
MA 5 HOH A 35 335 96 HOH HOH . 
MA 5 HOH A 36 336 122 HOH HOH . 
MA 5 HOH A 37 337 81 HOH HOH . 
MA 5 HOH A 38 338 131 HOH HOH . 
MA 5 HOH A 39 339 162 HOH HOH . 
MA 5 HOH A 40 340 93 HOH HOH . 
MA 5 HOH A 41 341 42 HOH HOH . 
MA 5 HOH A 42 342 90 HOH HOH . 
MA 5 HOH A 43 343 97 HOH HOH . 
MA 5 HOH A 44 344 207 HOH HOH . 
MA 5 HOH A 45 345 157 HOH HOH . 
MA 5 HOH A 46 346 159 HOH HOH . 
MA 5 HOH A 47 347 83 HOH HOH . 
MA 5 HOH A 48 348 88 HOH HOH . 
MA 5 HOH A 49 349 147 HOH HOH . 
MA 5 HOH A 50 350 85 HOH HOH . 
MA 5 HOH A 51 351 203 HOH HOH . 
MA 5 HOH A 52 352 194 HOH HOH . 
MA 5 HOH A 53 353 183 HOH HOH . 
MA 5 HOH A 54 354 184 HOH HOH . 
MA 5 HOH A 55 355 125 HOH HOH . 
MA 5 HOH A 56 356 86 HOH HOH . 
MA 5 HOH A 57 357 133 HOH HOH . 
MA 5 HOH A 58 358 138 HOH HOH . 
NA 5 HOH B 1 301 152 HOH HOH . 
NA 5 HOH B 2 302 52 HOH HOH . 
NA 5 HOH B 3 303 135 HOH HOH . 
NA 5 HOH B 4 304 79 HOH HOH . 
NA 5 HOH B 5 305 148 HOH HOH . 
NA 5 HOH B 6 306 22 HOH HOH . 
NA 5 HOH B 7 307 154 HOH HOH . 
NA 5 HOH B 8 308 53 HOH HOH . 
NA 5 HOH B 9 309 206 HOH HOH . 
NA 5 HOH B 10 310 25 HOH HOH . 
NA 5 HOH B 11 311 32 HOH HOH . 
NA 5 HOH B 12 312 59 HOH HOH . 
NA 5 HOH B 13 313 8 HOH HOH . 
NA 5 HOH B 14 314 70 HOH HOH . 
NA 5 HOH B 15 315 7 HOH HOH . 
NA 5 HOH B 16 316 4 HOH HOH . 
NA 5 HOH B 17 317 130 HOH HOH . 
NA 5 HOH B 18 318 114 HOH HOH . 
NA 5 HOH B 19 319 12 HOH HOH . 
NA 5 HOH B 20 320 2 HOH HOH . 
NA 5 HOH B 21 321 43 HOH HOH . 
NA 5 HOH B 22 322 57 HOH HOH . 
NA 5 HOH B 23 323 137 HOH HOH . 
NA 5 HOH B 24 324 35 HOH HOH . 
NA 5 HOH B 25 325 84 HOH HOH . 
NA 5 HOH B 26 326 6 HOH HOH . 
NA 5 HOH B 27 327 150 HOH HOH . 
NA 5 HOH B 28 328 129 HOH HOH . 
NA 5 HOH B 29 329 149 HOH HOH . 
NA 5 HOH B 30 330 89 HOH HOH . 
NA 5 HOH B 31 331 37 HOH HOH . 
NA 5 HOH B 32 332 161 HOH HOH . 
NA 5 HOH B 33 333 61 HOH HOH . 
NA 5 HOH B 34 334 71 HOH HOH . 
NA 5 HOH B 35 335 168 HOH HOH . 
NA 5 HOH B 36 336 15 HOH HOH . 
NA 5 HOH B 37 337 143 HOH HOH . 
NA 5 HOH B 38 338 187 HOH HOH . 
NA 5 HOH B 39 339 100 HOH HOH . 
NA 5 HOH B 40 340 196 HOH HOH . 
NA 5 HOH B 41 341 74 HOH HOH . 
NA 5 HOH B 42 342 126 HOH HOH . 
NA 5 HOH B 43 343 132 HOH HOH . 
NA 5 HOH B 44 344 103 HOH HOH . 
NA 5 HOH B 45 345 108 HOH HOH . 
NA 5 HOH B 46 346 146 HOH HOH . 
NA 5 HOH B 47 347 106 HOH HOH . 
NA 5 HOH B 48 348 80 HOH HOH . 
NA 5 HOH B 49 349 200 HOH HOH . 
NA 5 HOH B 50 350 195 HOH HOH . 
NA 5 HOH B 51 351 68 HOH HOH . 
NA 5 HOH B 52 352 124 HOH HOH . 
NA 5 HOH B 53 353 134 HOH HOH . 
OA 5 HOH C 1 301 127 HOH HOH . 
OA 5 HOH C 2 302 191 HOH HOH . 
OA 5 HOH C 3 303 77 HOH HOH . 
OA 5 HOH C 4 304 201 HOH HOH . 
OA 5 HOH C 5 305 82 HOH HOH . 
OA 5 HOH C 6 306 18 HOH HOH . 
OA 5 HOH C 7 307 66 HOH HOH . 
OA 5 HOH C 8 308 69 HOH HOH . 
OA 5 HOH C 9 309 26 HOH HOH . 
OA 5 HOH C 10 310 19 HOH HOH . 
OA 5 HOH C 11 311 151 HOH HOH . 
OA 5 HOH C 12 312 21 HOH HOH . 
OA 5 HOH C 13 313 48 HOH HOH . 
OA 5 HOH C 14 314 145 HOH HOH . 
OA 5 HOH C 15 315 47 HOH HOH . 
OA 5 HOH C 16 316 29 HOH HOH . 
OA 5 HOH C 17 317 13 HOH HOH . 
OA 5 HOH C 18 318 16 HOH HOH . 
OA 5 HOH C 19 319 38 HOH HOH . 
OA 5 HOH C 20 320 136 HOH HOH . 
OA 5 HOH C 21 321 73 HOH HOH . 
OA 5 HOH C 22 322 3 HOH HOH . 
OA 5 HOH C 23 323 58 HOH HOH . 
OA 5 HOH C 24 324 36 HOH HOH . 
OA 5 HOH C 25 325 10 HOH HOH . 
OA 5 HOH C 26 326 107 HOH HOH . 
OA 5 HOH C 27 327 180 HOH HOH . 
OA 5 HOH C 28 328 92 HOH HOH . 
OA 5 HOH C 29 329 110 HOH HOH . 
OA 5 HOH C 30 330 95 HOH HOH . 
OA 5 HOH C 31 331 23 HOH HOH . 
OA 5 HOH C 32 332 109 HOH HOH . 
OA 5 HOH C 33 333 118 HOH HOH . 
OA 5 HOH C 34 334 117 HOH HOH . 
OA 5 HOH C 35 335 179 HOH HOH . 
OA 5 HOH C 36 336 78 HOH HOH . 
OA 5 HOH C 37 337 139 HOH HOH . 
OA 5 HOH C 38 338 104 HOH HOH . 
OA 5 HOH C 39 339 121 HOH HOH . 
OA 5 HOH C 40 340 60 HOH HOH . 
OA 5 HOH C 41 341 142 HOH HOH . 
OA 5 HOH C 42 342 119 HOH HOH . 
OA 5 HOH C 43 343 208 HOH HOH . 
OA 5 HOH C 44 344 190 HOH HOH . 
OA 5 HOH C 45 345 98 HOH HOH . 
OA 5 HOH C 46 346 197 HOH HOH . 
OA 5 HOH C 47 347 202 HOH HOH . 
OA 5 HOH C 48 348 65 HOH HOH . 
OA 5 HOH C 49 349 113 HOH HOH . 
OA 5 HOH C 50 350 105 HOH HOH . 
OA 5 HOH C 51 351 189 HOH HOH . 
OA 5 HOH C 52 352 188 HOH HOH . 
OA 5 HOH C 53 353 198 HOH HOH . 
OA 5 HOH C 54 354 205 HOH HOH . 
OA 5 HOH C 55 355 199 HOH HOH . 
OA 5 HOH C 56 356 94 HOH HOH . 
OA 5 HOH C 57 357 140 HOH HOH . 
OA 5 HOH C 58 358 181 HOH HOH . 
OA 5 HOH C 59 359 101 HOH HOH . 
OA 5 HOH C 60 360 204 HOH HOH . 
OA 5 HOH C 61 361 54 HOH HOH . 
OA 5 HOH C 62 362 141 HOH HOH . 
OA 5 HOH C 63 363 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 78M . . . O 4 31.358 -6.499 25.813 1 44.6 ? O21 78M 212 A 1 
HETATM 2 C C20 78M . . . O 4 32.699 -6.873 25.485 1 53.26 ? C20 78M 212 A 1 
HETATM 3 C C18 78M . . . O 4 32.788 -7.017 23.984 1 48.35 ? C18 78M 212 A 1 
HETATM 4 O O19 78M . . . O 4 31.505 -7.176 23.506 1 51.92 ? O19 78M 212 A 1 
HETATM 5 C C17 78M . . . O 4 33.613 -8.255 23.617 1 43.77 ? C17 78M 212 A 1 
HETATM 6 O O2 78M . . . O 4 34.628 -7.901 22.655 1 56.37 ? O2 78M 212 A 1 
HETATM 7 C C1 78M . . . O 4 35.944 -8.247 23.113 1 47 ? C1 78M 212 A 1 
HETATM 8 O O1 78M . . . O 4 36.119 -8.431 24.294 1 56.21 ? O1 78M 212 A 1 
HETATM 9 C C2 78M . . . O 4 37.12 -8.381 22.14 1 45.59 ? C2 78M 212 A 1 
HETATM 10 C C3 78M . . . O 4 38.469 -8.264 22.839 1 47.35 ? C3 78M 212 A 1 
HETATM 11 C C4 78M . . . O 4 39.418 -7.274 22.135 1 53.14 ? C4 78M 212 A 1 
HETATM 12 C C5 78M . . . O 4 38.694 -6.082 21.519 1 51.82 ? C5 78M 212 A 1 
HETATM 13 C C6 78M . . . O 4 39.562 -5.325 20.515 1 55.15 ? C6 78M 212 A 1 
HETATM 14 C C7 78M . . . O 4 38.751 -4.797 19.325 1 53.8 ? C7 78M 212 A 1 
HETATM 15 C C8 78M . . . O 4 39.209 -5.385 17.971 1 46.51 ? C8 78M 212 A 1 
HETATM 16 C C9 78M . . . O 4 38.033 -5.511 17.006 1 42.04 ? C9 78M 212 A 1 
HETATM 17 C C10 78M . . . O 4 38.435 -5.558 15.495 1 43.74 ? C10 78M 212 A 1 
HETATM 18 C C11 78M . . . O 4 39.842 -6.137 15.267 1 42.91 ? C11 78M 212 A 1 
HETATM 19 C C12 78M . . . O 4 40.197 -6.182 13.761 1 42.24 ? C12 78M 212 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           19 
#