data_5YS5 # _model_server_result.job_id VDKp2KWZUB3BwqNI-USllg _model_server_result.datetime_utc '2024-10-19 20:15:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ys5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":705}' # _entry.id 5YS5 # _exptl.entry_id 5YS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.91 _cell.angle_gamma 90 _cell.entry_id 5YS5 _cell.length_a 62.568 _cell.length_b 50.632 _cell.length_c 66.623 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 103 A HIS 103 1_555 C CU CU . A CU 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc2 A OE1 GLU 110 A GLU 110 1_555 G CU CU . A CU 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 A OD1 ASP 132 A ASP 132 1_555 E CU CU . A CU 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc4 A OD2 ASP 132 A ASP 132 1_555 E CU CU . A CU 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc5 A NE2 HIS 141 A HIS 141 1_555 C CU CU . A CU 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 A NE2 HIS 143 A HIS 143 1_555 D CU CU . A CU 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc7 A NE2 HIS 145 A HIS 145 1_555 H CU CU . A CU 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc8 A NE2 HIS 314 A HIS 314 1_555 F CU CU . A CU 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc9 A NE2 HIS 406 A HIS 406 1_555 H CU CU . A CU 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc10 A ND1 HIS 443 A HIS 443 1_555 B CU CU . A CU 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc11 A NE2 HIS 448 A HIS 448 1_555 D CU CU . A CU 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc12 A NE2 HIS 488 A HIS 488 1_555 E CU CU . A CU 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc13 A NE2 HIS 494 A HIS 494 1_555 G CU CU . A CU 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc14 A NE2 HIS 499 A HIS 499 1_555 D CU CU . A CU 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc15 A SG CYS 500 A CYS 500 1_555 B CU CU . A CU 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc16 A NE2 HIS 501 A HIS 501 1_555 C CU CU . A CU 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc17 A ND1 HIS 505 A HIS 505 1_555 B CU CU . A CU 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc18 C CU CU . A CU 702 1_555 I O HOH . A HOH 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc19 D CU CU . A CU 703 1_555 I O HOH . A HOH 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc20 E CU CU . A CU 704 1_555 I O HOH . A HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc21 F CU CU . A CU 705 1_555 I O HOH . A HOH 873 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc22 F CU CU . A CU 705 1_555 I O HOH . A HOH 895 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc23 H CU CU . A CU 707 1_555 I O HOH . A HOH 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YS5 _atom_sites.fract_transf_matrix[1][1] 0.015983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001093 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 701 701 CU CU . C 2 CU A 1 702 702 CU CU . D 2 CU A 1 703 703 CU CU . E 2 CU A 1 704 704 CU CU . F 2 CU A 1 705 705 CU CU . G 2 CU A 1 706 706 CU CU . H 2 CU A 1 707 707 CU CU . I 3 HOH A 1 801 120 HOH HOH . I 3 HOH A 2 802 20 HOH HOH . I 3 HOH A 3 803 34 HOH HOH . I 3 HOH A 4 804 800 HOH HOH . I 3 HOH A 5 805 44 HOH HOH . I 3 HOH A 6 806 71 HOH HOH . I 3 HOH A 7 807 55 HOH HOH . I 3 HOH A 8 808 9 HOH HOH . I 3 HOH A 9 809 37 HOH HOH . I 3 HOH A 10 810 63 HOH HOH . I 3 HOH A 11 811 130 HOH HOH . I 3 HOH A 12 812 66 HOH HOH . I 3 HOH A 13 813 131 HOH HOH . I 3 HOH A 14 814 56 HOH HOH . I 3 HOH A 15 815 27 HOH HOH . I 3 HOH A 16 816 123 HOH HOH . I 3 HOH A 17 817 11 HOH HOH . I 3 HOH A 18 818 32 HOH HOH . I 3 HOH A 19 819 38 HOH HOH . I 3 HOH A 20 820 58 HOH HOH . I 3 HOH A 21 821 4 HOH HOH . I 3 HOH A 22 822 62 HOH HOH . I 3 HOH A 23 823 49 HOH HOH . I 3 HOH A 24 824 108 HOH HOH . I 3 HOH A 25 825 13 HOH HOH . I 3 HOH A 26 826 86 HOH HOH . I 3 HOH A 27 827 51 HOH HOH . I 3 HOH A 28 828 7 HOH HOH . I 3 HOH A 29 829 35 HOH HOH . I 3 HOH A 30 830 19 HOH HOH . I 3 HOH A 31 831 85 HOH HOH . I 3 HOH A 32 832 126 HOH HOH . I 3 HOH A 33 833 10 HOH HOH . I 3 HOH A 34 834 47 HOH HOH . I 3 HOH A 35 835 2 HOH HOH . I 3 HOH A 36 836 8 HOH HOH . I 3 HOH A 37 837 3 HOH HOH . I 3 HOH A 38 838 14 HOH HOH . I 3 HOH A 39 839 30 HOH HOH . I 3 HOH A 40 840 29 HOH HOH . I 3 HOH A 41 841 16 HOH HOH . I 3 HOH A 42 842 33 HOH HOH . I 3 HOH A 43 843 6 HOH HOH . I 3 HOH A 44 844 802 HOH HOH . I 3 HOH A 45 845 89 HOH HOH . I 3 HOH A 46 846 1 HOH HOH . I 3 HOH A 47 847 25 HOH HOH . I 3 HOH A 48 848 110 HOH HOH . I 3 HOH A 49 849 39 HOH HOH . I 3 HOH A 50 850 96 HOH HOH . I 3 HOH A 51 851 127 HOH HOH . I 3 HOH A 52 852 50 HOH HOH . I 3 HOH A 53 853 21 HOH HOH . I 3 HOH A 54 854 53 HOH HOH . I 3 HOH A 55 855 77 HOH HOH . I 3 HOH A 56 856 99 HOH HOH . I 3 HOH A 57 857 90 HOH HOH . I 3 HOH A 58 858 81 HOH HOH . I 3 HOH A 59 859 42 HOH HOH . I 3 HOH A 60 860 68 HOH HOH . I 3 HOH A 61 861 23 HOH HOH . I 3 HOH A 62 862 60 HOH HOH . I 3 HOH A 63 863 28 HOH HOH . I 3 HOH A 64 864 91 HOH HOH . I 3 HOH A 65 865 70 HOH HOH . I 3 HOH A 66 866 12 HOH HOH . I 3 HOH A 67 867 5 HOH HOH . I 3 HOH A 68 868 36 HOH HOH . I 3 HOH A 69 869 43 HOH HOH . I 3 HOH A 70 870 97 HOH HOH . I 3 HOH A 71 871 129 HOH HOH . I 3 HOH A 72 872 40 HOH HOH . I 3 HOH A 73 873 801 HOH HOH . I 3 HOH A 74 874 80 HOH HOH . I 3 HOH A 75 875 133 HOH HOH . I 3 HOH A 76 876 46 HOH HOH . I 3 HOH A 77 877 18 HOH HOH . I 3 HOH A 78 878 41 HOH HOH . I 3 HOH A 79 879 64 HOH HOH . I 3 HOH A 80 880 111 HOH HOH . I 3 HOH A 81 881 15 HOH HOH . I 3 HOH A 82 882 84 HOH HOH . I 3 HOH A 83 883 48 HOH HOH . I 3 HOH A 84 884 75 HOH HOH . I 3 HOH A 85 885 78 HOH HOH . I 3 HOH A 86 886 100 HOH HOH . I 3 HOH A 87 887 54 HOH HOH . I 3 HOH A 88 888 73 HOH HOH . I 3 HOH A 89 889 24 HOH HOH . I 3 HOH A 90 890 52 HOH HOH . I 3 HOH A 91 891 83 HOH HOH . I 3 HOH A 92 892 22 HOH HOH . I 3 HOH A 93 893 82 HOH HOH . I 3 HOH A 94 894 76 HOH HOH . I 3 HOH A 95 895 803 HOH HOH . I 3 HOH A 96 896 107 HOH HOH . I 3 HOH A 97 897 26 HOH HOH . I 3 HOH A 98 898 61 HOH HOH . I 3 HOH A 99 899 59 HOH HOH . I 3 HOH A 100 900 106 HOH HOH . I 3 HOH A 101 901 101 HOH HOH . I 3 HOH A 102 902 69 HOH HOH . I 3 HOH A 103 903 88 HOH HOH . I 3 HOH A 104 904 128 HOH HOH . I 3 HOH A 105 905 17 HOH HOH . I 3 HOH A 106 906 67 HOH HOH . I 3 HOH A 107 907 114 HOH HOH . I 3 HOH A 108 908 109 HOH HOH . I 3 HOH A 109 909 95 HOH HOH . I 3 HOH A 110 910 65 HOH HOH . I 3 HOH A 111 911 57 HOH HOH . I 3 HOH A 112 912 124 HOH HOH . I 3 HOH A 113 913 87 HOH HOH . I 3 HOH A 114 914 45 HOH HOH . I 3 HOH A 115 915 113 HOH HOH . I 3 HOH A 116 916 116 HOH HOH . I 3 HOH A 117 917 132 HOH HOH . I 3 HOH A 118 918 98 HOH HOH . I 3 HOH A 119 919 118 HOH HOH . I 3 HOH A 120 920 94 HOH HOH . I 3 HOH A 121 921 122 HOH HOH . I 3 HOH A 122 922 121 HOH HOH . I 3 HOH A 123 923 93 HOH HOH . I 3 HOH A 124 924 117 HOH HOH . I 3 HOH A 125 925 79 HOH HOH . I 3 HOH A 126 926 102 HOH HOH . I 3 HOH A 127 927 119 HOH HOH . I 3 HOH A 128 928 103 HOH HOH . I 3 HOH A 129 929 72 HOH HOH . I 3 HOH A 130 930 125 HOH HOH . I 3 HOH A 131 931 112 HOH HOH . I 3 HOH A 132 932 104 HOH HOH . I 3 HOH A 133 933 115 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.53 _atom_site.Cartn_y 6.226 _atom_site.Cartn_z 1.187 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 705 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #