data_5YSI # _model_server_result.job_id hYoFN-L2PPH63x50g9Adjg _model_server_result.datetime_utc '2024-10-19 13:19:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ysi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5YSI # _exptl.entry_id 5YSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.125 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YSI _cell.length_a 37.867 _cell.length_b 75.698 _cell.length_c 84.682 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 31 A ALA 784 1_555 A N MSE 32 A MSE 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 32 A MSE 785 1_555 A N ILE 33 A ILE 786 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C LYS 59 A LYS 812 1_555 A N MSE 60 A MSE 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 60 A MSE 813 1_555 A N SER 61 A SER 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C GLU 86 A GLU 839 1_555 A N MSE 87 A MSE 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 87 A MSE 840 1_555 A N LEU 88 A LEU 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C6 H6 N2 O' _chem_comp.formula_weight 122.125 _chem_comp.id NCA _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NCA doub 224 n y N1 C6 NCA sing 225 n y C2 C3 NCA sing 226 n y C2 H2 NCA sing 227 n n C3 C4 NCA doub 228 n y C3 C7 NCA sing 229 n n C4 C5 NCA sing 230 n y C4 H4 NCA sing 231 n n C5 C6 NCA doub 232 n y C5 H5 NCA sing 233 n n C6 H6 NCA sing 234 n n C7 O7 NCA doub 235 n n C7 N7 NCA sing 236 n n N7 HN71 NCA sing 237 n n N7 HN72 NCA sing 238 n n # _atom_sites.entry_id 5YSI _atom_sites.fract_transf_matrix[1][1] 0.026408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NCA A 1 1001 1 NCA NCA . C 3 HOH A 1 1101 36 HOH HOH . C 3 HOH A 2 1102 20 HOH HOH . C 3 HOH A 3 1103 7 HOH HOH . C 3 HOH A 4 1104 29 HOH HOH . C 3 HOH A 5 1105 14 HOH HOH . C 3 HOH A 6 1106 16 HOH HOH . C 3 HOH A 7 1107 27 HOH HOH . C 3 HOH A 8 1108 22 HOH HOH . C 3 HOH A 9 1109 15 HOH HOH . C 3 HOH A 10 1110 12 HOH HOH . C 3 HOH A 11 1111 2 HOH HOH . C 3 HOH A 12 1112 13 HOH HOH . C 3 HOH A 13 1113 9 HOH HOH . C 3 HOH A 14 1114 1 HOH HOH . C 3 HOH A 15 1115 4 HOH HOH . C 3 HOH A 16 1116 11 HOH HOH . C 3 HOH A 17 1117 8 HOH HOH . C 3 HOH A 18 1118 5 HOH HOH . C 3 HOH A 19 1119 3 HOH HOH . C 3 HOH A 20 1120 18 HOH HOH . C 3 HOH A 21 1121 10 HOH HOH . C 3 HOH A 22 1122 6 HOH HOH . C 3 HOH A 23 1123 26 HOH HOH . C 3 HOH A 24 1124 23 HOH HOH . C 3 HOH A 25 1125 21 HOH HOH . C 3 HOH A 26 1126 19 HOH HOH . C 3 HOH A 27 1127 17 HOH HOH . C 3 HOH A 28 1128 35 HOH HOH . C 3 HOH A 29 1129 39 HOH HOH . C 3 HOH A 30 1130 38 HOH HOH . C 3 HOH A 31 1131 28 HOH HOH . C 3 HOH A 32 1132 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NCA . . . B 2 18.688 13.867 54.681 1 30.94 ? N1 NCA 1001 A 1 HETATM 2 C C2 NCA . . . B 2 18.361 14.52 55.817 1 31.35 ? C2 NCA 1001 A 1 HETATM 3 C C3 NCA . . . B 2 19.004 14.171 56.993 1 31.67 ? C3 NCA 1001 A 1 HETATM 4 C C4 NCA . . . B 2 19.954 13.212 57.02 1 35.58 ? C4 NCA 1001 A 1 HETATM 5 C C5 NCA . . . B 2 20.296 12.569 55.881 1 22.12 ? C5 NCA 1001 A 1 HETATM 6 C C6 NCA . . . B 2 19.629 12.907 54.704 1 29.79 ? C6 NCA 1001 A 1 HETATM 7 C C7 NCA . . . B 2 18.698 14.881 58.297 1 28.48 ? C7 NCA 1001 A 1 HETATM 8 O O7 NCA . . . B 2 19.021 14.351 59.304 1 44.25 ? O7 NCA 1001 A 1 HETATM 9 N N7 NCA . . . B 2 18.091 16.2 58.332 1 38.24 ? N7 NCA 1001 A 1 HETATM 10 H H2 NCA . . . B 2 17.709 15.183 55.811 1 37.62 ? H2 NCA 1001 A 1 HETATM 11 H H4 NCA . . . B 2 20.385 13.006 57.818 1 42.7 ? H4 NCA 1001 A 1 HETATM 12 H H5 NCA . . . B 2 20.939 11.897 55.887 1 26.54 ? H5 NCA 1001 A 1 HETATM 13 H H6 NCA . . . B 2 19.846 12.465 53.915 1 35.75 ? H6 NCA 1001 A 1 HETATM 14 H HN71 NCA . . . B 2 17.935 16.581 59.086 1 45.89 ? HN71 NCA 1001 A 1 HETATM 15 H HN72 NCA . . . B 2 17.866 16.589 57.599 1 45.89 ? HN72 NCA 1001 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #