data_5YSP
#
_model_server_result.job_id            1MQwv7Nz73GzGnPTYa3B0g 
_model_server_result.datetime_utc      '2024-12-01 11:12:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ysp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    5YSP 
#
_exptl.entry_id    5YSP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.05 
_cell.angle_gamma         90 
_cell.entry_id            5YSP 
_cell.length_a            46.673 
_cell.length_b            63.009 
_cell.length_c            89.884 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YSP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H 1 1 
B,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D O2 MDN . A MDN 302 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc2 D O8 MDN . A MDN 302 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc3 E MG MG . A MG 303 1_555 H O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc4 E MG MG . A MG 303 1_555 H O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc5 E MG MG . A MG 303 1_555 H O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
metalc ? metalc6 E MG MG . A MG 303 1_555 H O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                INS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MYO-INOSITOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 INS sing 173 n n 
C1 C6 INS sing 174 n n 
C1 O1 INS sing 175 n n 
C1 H1 INS sing 176 n n 
C2 C3 INS sing 177 n n 
C2 O2 INS sing 178 n n 
C2 H2 INS sing 179 n n 
C3 C4 INS sing 180 n n 
C3 O3 INS sing 181 n n 
C3 H3 INS sing 182 n n 
C4 C5 INS sing 183 n n 
C4 O4 INS sing 184 n n 
C4 H4 INS sing 185 n n 
C5 C6 INS sing 186 n n 
C5 O5 INS sing 187 n n 
C5 H5 INS sing 188 n n 
C6 O6 INS sing 189 n n 
C6 H6 INS sing 190 n n 
O1 HO1 INS sing 191 n n 
O2 HO2 INS sing 192 n n 
O3 HO3 INS sing 193 n n 
O4 HO4 INS sing 194 n n 
O5 HO5 INS sing 195 n n 
O6 HO6 INS sing 196 n n 
#
_atom_sites.entry_id                     5YSP 
_atom_sites.fract_transf_matrix[1][1]    0.021426 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00576 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015871 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01152 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 INS A 1 301 301 INS INS . 
D 3 MDN A 1 302 302 MDN MDN . 
E 4 MG A 1 303 303 MG MG . 
F 2 INS B 1 301 301 INS INS . 
G 5 SO4 B 1 302 1 SO4 SO4 . 
H 6 HOH A 1 401 95 HOH HOH . 
H 6 HOH A 2 402 96 HOH HOH . 
H 6 HOH A 3 403 34 HOH HOH . 
H 6 HOH A 4 404 114 HOH HOH . 
H 6 HOH A 5 405 25 HOH HOH . 
H 6 HOH A 6 406 45 HOH HOH . 
H 6 HOH A 7 407 93 HOH HOH . 
H 6 HOH A 8 408 19 HOH HOH . 
H 6 HOH A 9 409 59 HOH HOH . 
H 6 HOH A 10 410 23 HOH HOH . 
H 6 HOH A 11 411 119 HOH HOH . 
H 6 HOH A 12 412 75 HOH HOH . 
H 6 HOH A 13 413 51 HOH HOH . 
H 6 HOH A 14 414 3 HOH HOH . 
H 6 HOH A 15 415 28 HOH HOH . 
H 6 HOH A 16 416 113 HOH HOH . 
H 6 HOH A 17 417 22 HOH HOH . 
H 6 HOH A 18 418 44 HOH HOH . 
H 6 HOH A 19 419 6 HOH HOH . 
H 6 HOH A 20 420 92 HOH HOH . 
H 6 HOH A 21 421 67 HOH HOH . 
H 6 HOH A 22 422 11 HOH HOH . 
H 6 HOH A 23 423 72 HOH HOH . 
H 6 HOH A 24 424 57 HOH HOH . 
H 6 HOH A 25 425 18 HOH HOH . 
H 6 HOH A 26 426 15 HOH HOH . 
H 6 HOH A 27 427 31 HOH HOH . 
H 6 HOH A 28 428 4 HOH HOH . 
H 6 HOH A 29 429 5 HOH HOH . 
H 6 HOH A 30 430 32 HOH HOH . 
H 6 HOH A 31 431 115 HOH HOH . 
H 6 HOH A 32 432 8 HOH HOH . 
H 6 HOH A 33 433 62 HOH HOH . 
H 6 HOH A 34 434 55 HOH HOH . 
H 6 HOH A 35 435 7 HOH HOH . 
H 6 HOH A 36 436 111 HOH HOH . 
H 6 HOH A 37 437 74 HOH HOH . 
H 6 HOH A 38 438 123 HOH HOH . 
H 6 HOH A 39 439 13 HOH HOH . 
H 6 HOH A 40 440 49 HOH HOH . 
H 6 HOH A 41 441 29 HOH HOH . 
H 6 HOH A 42 442 100 HOH HOH . 
H 6 HOH A 43 443 2 HOH HOH . 
H 6 HOH A 44 444 40 HOH HOH . 
H 6 HOH A 45 445 9 HOH HOH . 
H 6 HOH A 46 446 58 HOH HOH . 
H 6 HOH A 47 447 94 HOH HOH . 
H 6 HOH A 48 448 46 HOH HOH . 
H 6 HOH A 49 449 17 HOH HOH . 
H 6 HOH A 50 450 48 HOH HOH . 
H 6 HOH A 51 451 81 HOH HOH . 
H 6 HOH A 52 452 27 HOH HOH . 
H 6 HOH A 53 453 104 HOH HOH . 
H 6 HOH A 54 454 42 HOH HOH . 
H 6 HOH A 55 455 41 HOH HOH . 
H 6 HOH A 56 456 43 HOH HOH . 
H 6 HOH A 57 457 14 HOH HOH . 
H 6 HOH A 58 458 125 HOH HOH . 
H 6 HOH A 59 459 24 HOH HOH . 
H 6 HOH A 60 460 21 HOH HOH . 
H 6 HOH A 61 461 12 HOH HOH . 
H 6 HOH A 62 462 79 HOH HOH . 
H 6 HOH A 63 463 78 HOH HOH . 
H 6 HOH A 64 464 37 HOH HOH . 
H 6 HOH A 65 465 124 HOH HOH . 
H 6 HOH A 66 466 53 HOH HOH . 
H 6 HOH A 67 467 56 HOH HOH . 
H 6 HOH A 68 468 38 HOH HOH . 
H 6 HOH A 69 469 50 HOH HOH . 
H 6 HOH A 70 470 84 HOH HOH . 
H 6 HOH A 71 471 112 HOH HOH . 
H 6 HOH A 72 472 101 HOH HOH . 
H 6 HOH A 73 473 87 HOH HOH . 
H 6 HOH A 74 474 97 HOH HOH . 
H 6 HOH A 75 475 39 HOH HOH . 
H 6 HOH A 76 476 30 HOH HOH . 
H 6 HOH A 77 477 116 HOH HOH . 
H 6 HOH A 78 478 76 HOH HOH . 
H 6 HOH A 79 479 80 HOH HOH . 
H 6 HOH A 80 480 91 HOH HOH . 
H 6 HOH A 81 481 90 HOH HOH . 
I 6 HOH B 1 401 121 HOH HOH . 
I 6 HOH B 2 402 54 HOH HOH . 
I 6 HOH B 3 403 64 HOH HOH . 
I 6 HOH B 4 404 66 HOH HOH . 
I 6 HOH B 5 405 118 HOH HOH . 
I 6 HOH B 6 406 35 HOH HOH . 
I 6 HOH B 7 407 36 HOH HOH . 
I 6 HOH B 8 408 107 HOH HOH . 
I 6 HOH B 9 409 10 HOH HOH . 
I 6 HOH B 10 410 108 HOH HOH . 
I 6 HOH B 11 411 127 HOH HOH . 
I 6 HOH B 12 412 126 HOH HOH . 
I 6 HOH B 13 413 122 HOH HOH . 
I 6 HOH B 14 414 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 INS . . . F 2 15.502 23.591 9.303 1 36.45 ? C1 INS 301 B 1 
HETATM 2 C C2 INS . . . F 2 16.64 22.566 9.217 1 36.91 ? C2 INS 301 B 1 
HETATM 3 C C3 INS . . . F 2 16.636 21.883 7.857 1 37.12 ? C3 INS 301 B 1 
HETATM 4 C C4 INS . . . F 2 16.761 22.915 6.735 1 36.6 ? C4 INS 301 B 1 
HETATM 5 C C5 INS . . . F 2 15.628 23.935 6.812 1 36.3 ? C5 INS 301 B 1 
HETATM 6 C C6 INS . . . F 2 15.575 24.624 8.174 1 36.3 ? C6 INS 301 B 1 
HETATM 7 O O1 INS . . . F 2 15.552 24.234 10.574 1 35.63 ? O1 INS 301 B 1 
HETATM 8 O O2 INS . . . F 2 17.924 23.161 9.476 1 38.49 ? O2 INS 301 B 1 
HETATM 9 O O3 INS . . . F 2 17.695 20.921 7.814 1 36.82 ? O3 INS 301 B 1 
HETATM 10 O O4 INS . . . F 2 16.72 22.245 5.476 1 37.84 ? O4 INS 301 B 1 
HETATM 11 O O5 INS . . . F 2 15.795 24.919 5.787 1 35.67 ? O5 INS 301 B 1 
HETATM 12 O O6 INS . . . F 2 14.457 25.52 8.207 1 35.67 ? O6 INS 301 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#