data_5YSQ # _model_server_result.job_id s-btSI9wnhJwmOFzCefXcg _model_server_result.datetime_utc '2024-11-14 10:37:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ysq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5YSQ # _exptl.entry_id 5YSQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.97 _cell.angle_gamma 90 _cell.entry_id 5YSQ _cell.length_a 46.745 _cell.length_b 62.354 _cell.length_c 87.979 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YSQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id INS _chem_comp.mon_nstd_flag . _chem_comp.name 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MYO-INOSITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 INS sing 173 n n C1 C6 INS sing 174 n n C1 O1 INS sing 175 n n C1 H1 INS sing 176 n n C2 C3 INS sing 177 n n C2 O2 INS sing 178 n n C2 H2 INS sing 179 n n C3 C4 INS sing 180 n n C3 O3 INS sing 181 n n C3 H3 INS sing 182 n n C4 C5 INS sing 183 n n C4 O4 INS sing 184 n n C4 H4 INS sing 185 n n C5 C6 INS sing 186 n n C5 O5 INS sing 187 n n C5 H5 INS sing 188 n n C6 O6 INS sing 189 n n C6 H6 INS sing 190 n n O1 HO1 INS sing 191 n n O2 HO2 INS sing 192 n n O3 HO3 INS sing 193 n n O4 HO4 INS sing 194 n n O5 HO5 INS sing 195 n n O6 HO6 INS sing 196 n n # _atom_sites.entry_id 5YSQ _atom_sites.fract_transf_matrix[1][1] 0.021393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005322 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 INS A 1 301 301 INS INS . D 3 SO4 A 1 302 1 SO4 SO4 . E 3 SO4 A 1 303 3 SO4 SO4 . F 2 INS B 1 301 301 INS INS . G 3 SO4 B 1 302 2 SO4 SO4 . H 3 SO4 B 1 303 4 SO4 SO4 . I 4 HOH A 1 401 209 HOH HOH . I 4 HOH A 2 402 212 HOH HOH . I 4 HOH A 3 403 187 HOH HOH . I 4 HOH A 4 404 98 HOH HOH . I 4 HOH A 5 405 152 HOH HOH . I 4 HOH A 6 406 149 HOH HOH . I 4 HOH A 7 407 115 HOH HOH . I 4 HOH A 8 408 12 HOH HOH . I 4 HOH A 9 409 14 HOH HOH . I 4 HOH A 10 410 17 HOH HOH . I 4 HOH A 11 411 242 HOH HOH . I 4 HOH A 12 412 183 HOH HOH . I 4 HOH A 13 413 90 HOH HOH . I 4 HOH A 14 414 188 HOH HOH . I 4 HOH A 15 415 136 HOH HOH . I 4 HOH A 16 416 166 HOH HOH . I 4 HOH A 17 417 135 HOH HOH . I 4 HOH A 18 418 162 HOH HOH . I 4 HOH A 19 419 129 HOH HOH . I 4 HOH A 20 420 157 HOH HOH . I 4 HOH A 21 421 10 HOH HOH . I 4 HOH A 22 422 47 HOH HOH . I 4 HOH A 23 423 261 HOH HOH . I 4 HOH A 24 424 46 HOH HOH . I 4 HOH A 25 425 16 HOH HOH . I 4 HOH A 26 426 194 HOH HOH . I 4 HOH A 27 427 96 HOH HOH . I 4 HOH A 28 428 69 HOH HOH . I 4 HOH A 29 429 25 HOH HOH . I 4 HOH A 30 430 137 HOH HOH . I 4 HOH A 31 431 110 HOH HOH . I 4 HOH A 32 432 2 HOH HOH . I 4 HOH A 33 433 33 HOH HOH . I 4 HOH A 34 434 21 HOH HOH . I 4 HOH A 35 435 163 HOH HOH . I 4 HOH A 36 436 23 HOH HOH . I 4 HOH A 37 437 230 HOH HOH . I 4 HOH A 38 438 237 HOH HOH . I 4 HOH A 39 439 34 HOH HOH . I 4 HOH A 40 440 201 HOH HOH . I 4 HOH A 41 441 13 HOH HOH . I 4 HOH A 42 442 105 HOH HOH . I 4 HOH A 43 443 22 HOH HOH . I 4 HOH A 44 444 20 HOH HOH . I 4 HOH A 45 445 7 HOH HOH . I 4 HOH A 46 446 182 HOH HOH . I 4 HOH A 47 447 122 HOH HOH . I 4 HOH A 48 448 141 HOH HOH . I 4 HOH A 49 449 4 HOH HOH . I 4 HOH A 50 450 59 HOH HOH . I 4 HOH A 51 451 27 HOH HOH . I 4 HOH A 52 452 19 HOH HOH . I 4 HOH A 53 453 51 HOH HOH . I 4 HOH A 54 454 3 HOH HOH . I 4 HOH A 55 455 37 HOH HOH . I 4 HOH A 56 456 44 HOH HOH . I 4 HOH A 57 457 238 HOH HOH . I 4 HOH A 58 458 247 HOH HOH . I 4 HOH A 59 459 241 HOH HOH . I 4 HOH A 60 460 101 HOH HOH . I 4 HOH A 61 461 211 HOH HOH . I 4 HOH A 62 462 71 HOH HOH . I 4 HOH A 63 463 222 HOH HOH . I 4 HOH A 64 464 26 HOH HOH . I 4 HOH A 65 465 245 HOH HOH . I 4 HOH A 66 466 186 HOH HOH . I 4 HOH A 67 467 1 HOH HOH . I 4 HOH A 68 468 55 HOH HOH . I 4 HOH A 69 469 244 HOH HOH . I 4 HOH A 70 470 146 HOH HOH . I 4 HOH A 71 471 184 HOH HOH . I 4 HOH A 72 472 18 HOH HOH . I 4 HOH A 73 473 32 HOH HOH . I 4 HOH A 74 474 79 HOH HOH . I 4 HOH A 75 475 92 HOH HOH . I 4 HOH A 76 476 41 HOH HOH . I 4 HOH A 77 477 85 HOH HOH . I 4 HOH A 78 478 11 HOH HOH . I 4 HOH A 79 479 246 HOH HOH . I 4 HOH A 80 480 260 HOH HOH . I 4 HOH A 81 481 173 HOH HOH . I 4 HOH A 82 482 8 HOH HOH . I 4 HOH A 83 483 39 HOH HOH . I 4 HOH A 84 484 145 HOH HOH . I 4 HOH A 85 485 102 HOH HOH . I 4 HOH A 86 486 45 HOH HOH . I 4 HOH A 87 487 87 HOH HOH . I 4 HOH A 88 488 124 HOH HOH . I 4 HOH A 89 489 126 HOH HOH . I 4 HOH A 90 490 168 HOH HOH . I 4 HOH A 91 491 94 HOH HOH . I 4 HOH A 92 492 75 HOH HOH . I 4 HOH A 93 493 48 HOH HOH . I 4 HOH A 94 494 243 HOH HOH . I 4 HOH A 95 495 158 HOH HOH . I 4 HOH A 96 496 134 HOH HOH . I 4 HOH A 97 497 76 HOH HOH . I 4 HOH A 98 498 151 HOH HOH . I 4 HOH A 99 499 84 HOH HOH . I 4 HOH A 100 500 111 HOH HOH . I 4 HOH A 101 501 155 HOH HOH . I 4 HOH A 102 502 89 HOH HOH . I 4 HOH A 103 503 58 HOH HOH . I 4 HOH A 104 504 223 HOH HOH . I 4 HOH A 105 505 195 HOH HOH . I 4 HOH A 106 506 108 HOH HOH . I 4 HOH A 107 507 199 HOH HOH . I 4 HOH A 108 508 5 HOH HOH . I 4 HOH A 109 509 140 HOH HOH . I 4 HOH A 110 510 118 HOH HOH . I 4 HOH A 111 511 97 HOH HOH . I 4 HOH A 112 512 36 HOH HOH . I 4 HOH A 113 513 228 HOH HOH . I 4 HOH A 114 514 227 HOH HOH . I 4 HOH A 115 515 6 HOH HOH . I 4 HOH A 116 516 248 HOH HOH . I 4 HOH A 117 517 123 HOH HOH . I 4 HOH A 118 518 198 HOH HOH . I 4 HOH A 119 519 179 HOH HOH . I 4 HOH A 120 520 61 HOH HOH . I 4 HOH A 121 521 54 HOH HOH . I 4 HOH A 122 522 171 HOH HOH . I 4 HOH A 123 523 263 HOH HOH . I 4 HOH A 124 524 193 HOH HOH . I 4 HOH A 125 525 142 HOH HOH . I 4 HOH A 126 526 174 HOH HOH . I 4 HOH A 127 527 161 HOH HOH . I 4 HOH A 128 528 197 HOH HOH . I 4 HOH A 129 529 180 HOH HOH . I 4 HOH A 130 530 236 HOH HOH . I 4 HOH A 131 531 202 HOH HOH . I 4 HOH A 132 532 178 HOH HOH . I 4 HOH A 133 533 148 HOH HOH . I 4 HOH A 134 534 239 HOH HOH . I 4 HOH A 135 535 119 HOH HOH . I 4 HOH A 136 536 226 HOH HOH . I 4 HOH A 137 537 264 HOH HOH . I 4 HOH A 138 538 181 HOH HOH . I 4 HOH A 139 539 167 HOH HOH . I 4 HOH A 140 540 229 HOH HOH . J 4 HOH B 1 401 78 HOH HOH . J 4 HOH B 2 402 93 HOH HOH . J 4 HOH B 3 403 125 HOH HOH . J 4 HOH B 4 404 153 HOH HOH . J 4 HOH B 5 405 170 HOH HOH . J 4 HOH B 6 406 120 HOH HOH . J 4 HOH B 7 407 127 HOH HOH . J 4 HOH B 8 408 254 HOH HOH . J 4 HOH B 9 409 221 HOH HOH . J 4 HOH B 10 410 104 HOH HOH . J 4 HOH B 11 411 189 HOH HOH . J 4 HOH B 12 412 91 HOH HOH . J 4 HOH B 13 413 107 HOH HOH . J 4 HOH B 14 414 74 HOH HOH . J 4 HOH B 15 415 210 HOH HOH . J 4 HOH B 16 416 139 HOH HOH . J 4 HOH B 17 417 265 HOH HOH . J 4 HOH B 18 418 266 HOH HOH . J 4 HOH B 19 419 68 HOH HOH . J 4 HOH B 20 420 82 HOH HOH . J 4 HOH B 21 421 216 HOH HOH . J 4 HOH B 22 422 56 HOH HOH . J 4 HOH B 23 423 156 HOH HOH . J 4 HOH B 24 424 207 HOH HOH . J 4 HOH B 25 425 190 HOH HOH . J 4 HOH B 26 426 83 HOH HOH . J 4 HOH B 27 427 106 HOH HOH . J 4 HOH B 28 428 231 HOH HOH . J 4 HOH B 29 429 67 HOH HOH . J 4 HOH B 30 430 172 HOH HOH . J 4 HOH B 31 431 143 HOH HOH . J 4 HOH B 32 432 191 HOH HOH . J 4 HOH B 33 433 15 HOH HOH . J 4 HOH B 34 434 128 HOH HOH . J 4 HOH B 35 435 62 HOH HOH . J 4 HOH B 36 436 65 HOH HOH . J 4 HOH B 37 437 40 HOH HOH . J 4 HOH B 38 438 192 HOH HOH . J 4 HOH B 39 439 86 HOH HOH . J 4 HOH B 40 440 232 HOH HOH . J 4 HOH B 41 441 138 HOH HOH . J 4 HOH B 42 442 9 HOH HOH . J 4 HOH B 43 443 217 HOH HOH . J 4 HOH B 44 444 218 HOH HOH . J 4 HOH B 45 445 28 HOH HOH . J 4 HOH B 46 446 205 HOH HOH . J 4 HOH B 47 447 147 HOH HOH . J 4 HOH B 48 448 80 HOH HOH . J 4 HOH B 49 449 77 HOH HOH . J 4 HOH B 50 450 29 HOH HOH . J 4 HOH B 51 451 72 HOH HOH . J 4 HOH B 52 452 131 HOH HOH . J 4 HOH B 53 453 253 HOH HOH . J 4 HOH B 54 454 81 HOH HOH . J 4 HOH B 55 455 100 HOH HOH . J 4 HOH B 56 456 160 HOH HOH . J 4 HOH B 57 457 42 HOH HOH . J 4 HOH B 58 458 258 HOH HOH . J 4 HOH B 59 459 53 HOH HOH . J 4 HOH B 60 460 52 HOH HOH . J 4 HOH B 61 461 112 HOH HOH . J 4 HOH B 62 462 24 HOH HOH . J 4 HOH B 63 463 50 HOH HOH . J 4 HOH B 64 464 73 HOH HOH . J 4 HOH B 65 465 103 HOH HOH . J 4 HOH B 66 466 113 HOH HOH . J 4 HOH B 67 467 133 HOH HOH . J 4 HOH B 68 468 206 HOH HOH . J 4 HOH B 69 469 35 HOH HOH . J 4 HOH B 70 470 70 HOH HOH . J 4 HOH B 71 471 200 HOH HOH . J 4 HOH B 72 472 30 HOH HOH . J 4 HOH B 73 473 251 HOH HOH . J 4 HOH B 74 474 219 HOH HOH . J 4 HOH B 75 475 60 HOH HOH . J 4 HOH B 76 476 144 HOH HOH . J 4 HOH B 77 477 109 HOH HOH . J 4 HOH B 78 478 169 HOH HOH . J 4 HOH B 79 479 257 HOH HOH . J 4 HOH B 80 480 249 HOH HOH . J 4 HOH B 81 481 95 HOH HOH . J 4 HOH B 82 482 130 HOH HOH . J 4 HOH B 83 483 132 HOH HOH . J 4 HOH B 84 484 43 HOH HOH . J 4 HOH B 85 485 255 HOH HOH . J 4 HOH B 86 486 38 HOH HOH . J 4 HOH B 87 487 57 HOH HOH . J 4 HOH B 88 488 220 HOH HOH . J 4 HOH B 89 489 114 HOH HOH . J 4 HOH B 90 490 49 HOH HOH . J 4 HOH B 91 491 116 HOH HOH . J 4 HOH B 92 492 215 HOH HOH . J 4 HOH B 93 493 176 HOH HOH . J 4 HOH B 94 494 66 HOH HOH . J 4 HOH B 95 495 252 HOH HOH . J 4 HOH B 96 496 224 HOH HOH . J 4 HOH B 97 497 150 HOH HOH . J 4 HOH B 98 498 117 HOH HOH . J 4 HOH B 99 499 214 HOH HOH . J 4 HOH B 100 500 235 HOH HOH . J 4 HOH B 101 501 88 HOH HOH . J 4 HOH B 102 502 250 HOH HOH . J 4 HOH B 103 503 240 HOH HOH . J 4 HOH B 104 504 31 HOH HOH . J 4 HOH B 105 505 164 HOH HOH . J 4 HOH B 106 506 203 HOH HOH . J 4 HOH B 107 507 204 HOH HOH . J 4 HOH B 108 508 121 HOH HOH . J 4 HOH B 109 509 99 HOH HOH . J 4 HOH B 110 510 256 HOH HOH . J 4 HOH B 111 511 185 HOH HOH . J 4 HOH B 112 512 233 HOH HOH . J 4 HOH B 113 513 154 HOH HOH . J 4 HOH B 114 514 259 HOH HOH . J 4 HOH B 115 515 234 HOH HOH . J 4 HOH B 116 516 165 HOH HOH . J 4 HOH B 117 517 208 HOH HOH . J 4 HOH B 118 518 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 INS . . . F 2 -14.454 -23.021 9.079 1 16.85 ? C1 INS 301 B 1 HETATM 2 C C2 INS . . . F 2 -15.486 -21.897 8.991 1 16.46 ? C2 INS 301 B 1 HETATM 3 C C3 INS . . . F 2 -15.484 -21.232 7.635 1 16.54 ? C3 INS 301 B 1 HETATM 4 C C4 INS . . . F 2 -15.721 -22.233 6.529 1 16.24 ? C4 INS 301 B 1 HETATM 5 C C5 INS . . . F 2 -14.662 -23.321 6.633 1 16.66 ? C5 INS 301 B 1 HETATM 6 C C6 INS . . . F 2 -14.655 -24.058 7.967 1 16.76 ? C6 INS 301 B 1 HETATM 7 O O1 INS . . . F 2 -14.582 -23.682 10.348 1 17 ? O1 INS 301 B 1 HETATM 8 O O2 INS . . . F 2 -16.768 -22.441 9.287 1 16.36 ? O2 INS 301 B 1 HETATM 9 O O3 INS . . . F 2 -16.464 -20.168 7.604 1 16.71 ? O3 INS 301 B 1 HETATM 10 O O4 INS . . . F 2 -15.616 -21.525 5.304 1 16.13 ? O4 INS 301 B 1 HETATM 11 O O5 INS . . . F 2 -14.968 -24.25 5.584 1 16.59 ? O5 INS 301 B 1 HETATM 12 O O6 INS . . . F 2 -13.616 -25.068 7.971 1 18.09 ? O6 INS 301 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #