data_5YTA
#
_model_server_result.job_id            vu01t4yEdJlT6-wW46HSRQ 
_model_server_result.datetime_utc      '2024-11-27 12:05:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yta 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    5YTA 
#
_exptl.entry_id    5YTA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              89.05 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OXAMIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5YTA 
_cell.length_a            130.788 
_cell.length_b            130.788 
_cell.length_c            111.909 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YTA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C2 H3 N O3' 
_chem_comp.formula_weight    89.05 
_chem_comp.id                OXM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OXAMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 OXM sing 312 n n 
C1 O1 OXM doub 313 n n 
C1 C2 OXM sing 314 n n 
N1 HN1 OXM sing 315 n n 
N1 HN2 OXM sing 316 n n 
C2 O2 OXM doub 317 n n 
C2 O3 OXM sing 318 n n 
O3 HO3 OXM sing 319 n n 
#
_atom_sites.entry_id                     5YTA 
_atom_sites.fract_transf_matrix[1][1]    0.007646 
_atom_sites.fract_transf_matrix[1][2]    0.004414 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008829 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008936 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 401 1 NAD NAD . 
D 3 OXM A 1 402 1 OXM OXM . 
E 2 NAD B 1 401 1 NAD NAD . 
F 3 OXM B 1 402 1 OXM OXM . 
G 4 HOH A 1 501 35 HOH HOH . 
G 4 HOH A 2 502 18 HOH HOH . 
G 4 HOH A 3 503 159 HOH HOH . 
G 4 HOH A 4 504 61 HOH HOH . 
G 4 HOH A 5 505 152 HOH HOH . 
G 4 HOH A 6 506 46 HOH HOH . 
G 4 HOH A 7 507 129 HOH HOH . 
G 4 HOH A 8 508 165 HOH HOH . 
G 4 HOH A 9 509 178 HOH HOH . 
G 4 HOH A 10 510 98 HOH HOH . 
G 4 HOH A 11 511 12 HOH HOH . 
G 4 HOH A 12 512 171 HOH HOH . 
G 4 HOH A 13 513 170 HOH HOH . 
G 4 HOH A 14 514 4 HOH HOH . 
G 4 HOH A 15 515 142 HOH HOH . 
G 4 HOH A 16 516 45 HOH HOH . 
G 4 HOH A 17 517 166 HOH HOH . 
G 4 HOH A 18 518 110 HOH HOH . 
G 4 HOH A 19 519 81 HOH HOH . 
G 4 HOH A 20 520 162 HOH HOH . 
G 4 HOH A 21 521 172 HOH HOH . 
G 4 HOH A 22 522 169 HOH HOH . 
G 4 HOH A 23 523 107 HOH HOH . 
G 4 HOH A 24 524 36 HOH HOH . 
G 4 HOH A 25 525 158 HOH HOH . 
G 4 HOH A 26 526 154 HOH HOH . 
G 4 HOH A 27 527 42 HOH HOH . 
G 4 HOH A 28 528 94 HOH HOH . 
G 4 HOH A 29 529 76 HOH HOH . 
G 4 HOH A 30 530 163 HOH HOH . 
G 4 HOH A 31 531 139 HOH HOH . 
G 4 HOH A 32 532 136 HOH HOH . 
G 4 HOH A 33 533 157 HOH HOH . 
G 4 HOH A 34 534 44 HOH HOH . 
G 4 HOH A 35 535 9 HOH HOH . 
G 4 HOH A 36 536 151 HOH HOH . 
G 4 HOH A 37 537 100 HOH HOH . 
G 4 HOH A 38 538 47 HOH HOH . 
G 4 HOH A 39 539 122 HOH HOH . 
G 4 HOH A 40 540 133 HOH HOH . 
G 4 HOH A 41 541 116 HOH HOH . 
G 4 HOH A 42 542 101 HOH HOH . 
G 4 HOH A 43 543 176 HOH HOH . 
G 4 HOH A 44 544 25 HOH HOH . 
G 4 HOH A 45 545 131 HOH HOH . 
G 4 HOH A 46 546 68 HOH HOH . 
G 4 HOH A 47 547 156 HOH HOH . 
G 4 HOH A 48 548 40 HOH HOH . 
G 4 HOH A 49 549 120 HOH HOH . 
G 4 HOH A 50 550 161 HOH HOH . 
G 4 HOH A 51 551 3 HOH HOH . 
G 4 HOH A 52 552 52 HOH HOH . 
G 4 HOH A 53 553 184 HOH HOH . 
G 4 HOH A 54 554 73 HOH HOH . 
G 4 HOH A 55 555 78 HOH HOH . 
G 4 HOH A 56 556 144 HOH HOH . 
G 4 HOH A 57 557 175 HOH HOH . 
G 4 HOH A 58 558 86 HOH HOH . 
G 4 HOH A 59 559 173 HOH HOH . 
G 4 HOH A 60 560 182 HOH HOH . 
G 4 HOH A 61 561 90 HOH HOH . 
G 4 HOH A 62 562 13 HOH HOH . 
G 4 HOH A 63 563 10 HOH HOH . 
G 4 HOH A 64 564 49 HOH HOH . 
G 4 HOH A 65 565 53 HOH HOH . 
G 4 HOH A 66 566 104 HOH HOH . 
G 4 HOH A 67 567 134 HOH HOH . 
G 4 HOH A 68 568 150 HOH HOH . 
G 4 HOH A 69 569 43 HOH HOH . 
G 4 HOH A 70 570 17 HOH HOH . 
G 4 HOH A 71 571 153 HOH HOH . 
G 4 HOH A 72 572 77 HOH HOH . 
G 4 HOH A 73 573 24 HOH HOH . 
G 4 HOH A 74 574 21 HOH HOH . 
G 4 HOH A 75 575 2 HOH HOH . 
G 4 HOH A 76 576 143 HOH HOH . 
G 4 HOH A 77 577 69 HOH HOH . 
G 4 HOH A 78 578 109 HOH HOH . 
G 4 HOH A 79 579 27 HOH HOH . 
G 4 HOH A 80 580 28 HOH HOH . 
G 4 HOH A 81 581 57 HOH HOH . 
G 4 HOH A 82 582 66 HOH HOH . 
G 4 HOH A 83 583 160 HOH HOH . 
G 4 HOH A 84 584 167 HOH HOH . 
G 4 HOH A 85 585 87 HOH HOH . 
G 4 HOH A 86 586 82 HOH HOH . 
G 4 HOH A 87 587 89 HOH HOH . 
G 4 HOH A 88 588 16 HOH HOH . 
G 4 HOH A 89 589 177 HOH HOH . 
G 4 HOH A 90 590 102 HOH HOH . 
G 4 HOH A 91 591 39 HOH HOH . 
G 4 HOH A 92 592 183 HOH HOH . 
G 4 HOH A 93 593 128 HOH HOH . 
G 4 HOH A 94 594 181 HOH HOH . 
G 4 HOH A 95 595 127 HOH HOH . 
G 4 HOH A 96 596 32 HOH HOH . 
G 4 HOH A 97 597 54 HOH HOH . 
G 4 HOH A 98 598 168 HOH HOH . 
G 4 HOH A 99 599 137 HOH HOH . 
G 4 HOH A 100 600 114 HOH HOH . 
G 4 HOH A 101 601 51 HOH HOH . 
G 4 HOH A 102 602 196 HOH HOH . 
G 4 HOH A 103 603 63 HOH HOH . 
G 4 HOH A 104 604 108 HOH HOH . 
G 4 HOH A 105 605 155 HOH HOH . 
G 4 HOH A 106 606 117 HOH HOH . 
G 4 HOH A 107 607 124 HOH HOH . 
G 4 HOH A 108 608 149 HOH HOH . 
G 4 HOH A 109 609 164 HOH HOH . 
H 4 HOH B 1 501 192 HOH HOH . 
H 4 HOH B 2 502 41 HOH HOH . 
H 4 HOH B 3 503 97 HOH HOH . 
H 4 HOH B 4 504 29 HOH HOH . 
H 4 HOH B 5 505 5 HOH HOH . 
H 4 HOH B 6 506 138 HOH HOH . 
H 4 HOH B 7 507 126 HOH HOH . 
H 4 HOH B 8 508 72 HOH HOH . 
H 4 HOH B 9 509 115 HOH HOH . 
H 4 HOH B 10 510 20 HOH HOH . 
H 4 HOH B 11 511 118 HOH HOH . 
H 4 HOH B 12 512 65 HOH HOH . 
H 4 HOH B 13 513 88 HOH HOH . 
H 4 HOH B 14 514 48 HOH HOH . 
H 4 HOH B 15 515 202 HOH HOH . 
H 4 HOH B 16 516 23 HOH HOH . 
H 4 HOH B 17 517 99 HOH HOH . 
H 4 HOH B 18 518 199 HOH HOH . 
H 4 HOH B 19 519 112 HOH HOH . 
H 4 HOH B 20 520 33 HOH HOH . 
H 4 HOH B 21 521 19 HOH HOH . 
H 4 HOH B 22 522 84 HOH HOH . 
H 4 HOH B 23 523 105 HOH HOH . 
H 4 HOH B 24 524 56 HOH HOH . 
H 4 HOH B 25 525 200 HOH HOH . 
H 4 HOH B 26 526 187 HOH HOH . 
H 4 HOH B 27 527 34 HOH HOH . 
H 4 HOH B 28 528 140 HOH HOH . 
H 4 HOH B 29 529 123 HOH HOH . 
H 4 HOH B 30 530 38 HOH HOH . 
H 4 HOH B 31 531 1 HOH HOH . 
H 4 HOH B 32 532 119 HOH HOH . 
H 4 HOH B 33 533 106 HOH HOH . 
H 4 HOH B 34 534 79 HOH HOH . 
H 4 HOH B 35 535 50 HOH HOH . 
H 4 HOH B 36 536 11 HOH HOH . 
H 4 HOH B 37 537 95 HOH HOH . 
H 4 HOH B 38 538 132 HOH HOH . 
H 4 HOH B 39 539 85 HOH HOH . 
H 4 HOH B 40 540 188 HOH HOH . 
H 4 HOH B 41 541 55 HOH HOH . 
H 4 HOH B 42 542 190 HOH HOH . 
H 4 HOH B 43 543 197 HOH HOH . 
H 4 HOH B 44 544 6 HOH HOH . 
H 4 HOH B 45 545 130 HOH HOH . 
H 4 HOH B 46 546 62 HOH HOH . 
H 4 HOH B 47 547 195 HOH HOH . 
H 4 HOH B 48 548 14 HOH HOH . 
H 4 HOH B 49 549 8 HOH HOH . 
H 4 HOH B 50 550 58 HOH HOH . 
H 4 HOH B 51 551 67 HOH HOH . 
H 4 HOH B 52 552 147 HOH HOH . 
H 4 HOH B 53 553 26 HOH HOH . 
H 4 HOH B 54 554 113 HOH HOH . 
H 4 HOH B 55 555 30 HOH HOH . 
H 4 HOH B 56 556 7 HOH HOH . 
H 4 HOH B 57 557 80 HOH HOH . 
H 4 HOH B 58 558 91 HOH HOH . 
H 4 HOH B 59 559 145 HOH HOH . 
H 4 HOH B 60 560 59 HOH HOH . 
H 4 HOH B 61 561 198 HOH HOH . 
H 4 HOH B 62 562 92 HOH HOH . 
H 4 HOH B 63 563 189 HOH HOH . 
H 4 HOH B 64 564 193 HOH HOH . 
H 4 HOH B 65 565 135 HOH HOH . 
H 4 HOH B 66 566 103 HOH HOH . 
H 4 HOH B 67 567 74 HOH HOH . 
H 4 HOH B 68 568 71 HOH HOH . 
H 4 HOH B 69 569 37 HOH HOH . 
H 4 HOH B 70 570 111 HOH HOH . 
H 4 HOH B 71 571 15 HOH HOH . 
H 4 HOH B 72 572 60 HOH HOH . 
H 4 HOH B 73 573 141 HOH HOH . 
H 4 HOH B 74 574 121 HOH HOH . 
H 4 HOH B 75 575 203 HOH HOH . 
H 4 HOH B 76 576 96 HOH HOH . 
H 4 HOH B 77 577 70 HOH HOH . 
H 4 HOH B 78 578 180 HOH HOH . 
H 4 HOH B 79 579 125 HOH HOH . 
H 4 HOH B 80 580 22 HOH HOH . 
H 4 HOH B 81 581 186 HOH HOH . 
H 4 HOH B 82 582 179 HOH HOH . 
H 4 HOH B 83 583 191 HOH HOH . 
H 4 HOH B 84 584 83 HOH HOH . 
H 4 HOH B 85 585 201 HOH HOH . 
H 4 HOH B 86 586 93 HOH HOH . 
H 4 HOH B 87 587 64 HOH HOH . 
H 4 HOH B 88 588 148 HOH HOH . 
H 4 HOH B 89 589 146 HOH HOH . 
H 4 HOH B 90 590 31 HOH HOH . 
H 4 HOH B 91 591 174 HOH HOH . 
H 4 HOH B 92 592 185 HOH HOH . 
H 4 HOH B 93 593 75 HOH HOH . 
H 4 HOH B 94 594 194 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OXM . . . D 3 -5.474 -59.204 -11.905 1 37.16 ? C1 OXM 402 A 1 
HETATM 2 N N1 OXM . . . D 3 -5.752 -59.399 -13.196 1 35.2 ? N1 OXM 402 A 1 
HETATM 3 O O1 OXM . . . D 3 -4.624 -58.374 -11.44 1 36.19 ? O1 OXM 402 A 1 
HETATM 4 C C2 OXM . . . D 3 -6.227 -60.025 -10.952 1 35 ? C2 OXM 402 A 1 
HETATM 5 O O2 OXM . . . D 3 -7.323 -60.559 -11.295 1 36.46 ? O2 OXM 402 A 1 
HETATM 6 O O3 OXM . . . D 3 -5.728 -60.179 -9.819 1 33.86 ? O3 OXM 402 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#